Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12069:12068
Extra
PDB:
ATOM 1 O3' G A2068 -29.852 -11.587 66.799 1.00 63.34 O
ATOM 2 P A A2069 -29.199 -11.968 68.213 1.00 68.28 P
ATOM 3 OP1 A A2069 -28.284 -10.841 68.599 1.00 68.08 O
ATOM 4 OP2 A A2069 -28.632 -13.340 68.100 1.00 68.33 O
ATOM 5 O5' A A2069 -30.479 -11.985 69.168 1.00 68.31 O
ATOM 6 C5' A A2069 -30.702 -10.960 70.123 1.00 68.17 C
ATOM 7 C4' A A2069 -32.142 -10.911 70.520 1.00 68.26 C
ATOM 8 O4' A A2069 -32.903 -10.246 69.480 1.00 68.40 O
ATOM 9 C3' A A2069 -32.817 -12.253 70.674 1.00 68.40 C
ATOM 10 O3' A A2069 -32.592 -12.835 71.944 1.00 68.29 O
ATOM 11 C2' A A2069 -34.274 -11.926 70.392 1.00 68.55 C
ATOM 12 O2' A A2069 -34.865 -11.291 71.516 1.00 68.45 O
ATOM 13 C1' A A2069 -34.127 -10.901 69.270 1.00 68.58 C
ATOM 14 N9 A A2069 -34.040 -11.552 67.968 1.00 68.75 N
ATOM 15 C8 A A2069 -32.945 -11.568 67.141 1.00 68.73 C
ATOM 16 N7 A A2069 -33.110 -12.270 66.052 1.00 68.90 N
ATOM 17 C5 A A2069 -34.395 -12.765 66.183 1.00 69.04 C
ATOM 18 C6 A A2069 -35.174 -13.601 65.370 1.00 69.26 C
ATOM 19 N6 A A2069 -34.773 -14.104 64.208 1.00 69.37 N
ATOM 20 N1 A A2069 -36.425 -13.883 65.793 1.00 69.35 N
ATOM 21 C2 A A2069 -36.852 -13.372 66.960 1.00 69.24 C
ATOM 22 N3 A A2069 -36.207 -12.589 67.838 1.00 69.04 N
ATOM 23 C4 A A2069 -34.976 -12.325 67.370 1.00 68.95 C
ATOM 24 P C A2070 -32.449 -14.432 72.072 1.00 73.07 P
ATOM 25 OP1 C A2070 -32.792 -14.800 73.464 1.00 72.99 O
ATOM 26 OP2 C A2070 -31.110 -14.796 71.547 1.00 73.02 O
ATOM 27 O5' C A2070 -33.572 -14.941 71.059 1.00 73.32 O
TER
ATOM 1 O3' U B2067 -26.402 -8.080 62.119 1.00 79.61 O
ATOM 2 P G B2068 -25.966 -9.475 62.755 1.00 63.23 P
ATOM 3 OP1 G B2068 -24.981 -9.179 63.821 1.00 63.01 O
ATOM 4 OP2 G B2068 -25.565 -10.373 61.624 1.00 63.37 O
ATOM 5 O5' G B2068 -27.326 -10.000 63.398 1.00 63.33 O
ATOM 6 C5' G B2068 -27.740 -9.577 64.696 1.00 63.21 C
ATOM 7 C4' G B2068 -29.079 -10.144 65.049 1.00 63.34 C
ATOM 8 O4' G B2068 -29.872 -10.204 63.847 1.00 63.55 O
ATOM 9 C3' G B2068 -29.056 -11.547 65.641 1.00 63.37 C
ATOM 10 O3' G B2068 -29.852 -11.587 66.799 1.00 63.34 O
ATOM 11 C2' G B2068 -29.694 -12.431 64.576 1.00 63.60 C
ATOM 12 O2' G B2068 -30.530 -13.450 65.089 1.00 63.70 O
ATOM 13 C1' G B2068 -30.491 -11.459 63.722 1.00 63.70 C
ATOM 14 N9 G B2068 -30.484 -11.828 62.310 1.00 63.87 N
ATOM 15 C8 G B2068 -29.412 -11.622 61.489 1.00 63.84 C
ATOM 16 N7 G B2068 -29.597 -12.065 60.286 1.00 64.01 N
ATOM 17 C5 G B2068 -30.863 -12.608 60.317 1.00 64.16 C
ATOM 18 C6 G B2068 -31.587 -13.228 59.280 1.00 64.38 C
ATOM 19 O6 G B2068 -31.208 -13.403 58.120 1.00 64.47 O
ATOM 20 N1 G B2068 -32.836 -13.659 59.698 1.00 64.49 N
ATOM 21 C2 G B2068 -33.333 -13.498 60.957 1.00 64.40 C
ATOM 22 N2 G B2068 -34.570 -13.965 61.162 1.00 64.53 N
ATOM 23 N3 G B2068 -32.659 -12.906 61.937 1.00 64.19 N
ATOM 24 C4 G B2068 -31.434 -12.485 61.558 1.00 64.08 C
ATOM 25 P A B2069 -29.199 -11.968 68.213 1.00 68.28 P
ATOM 26 OP1 A B2069 -28.284 -10.841 68.599 1.00 68.08 O
ATOM 27 OP2 A B2069 -28.632 -13.340 68.100 1.00 68.33 O
ATOM 28 O5' A B2069 -30.479 -11.985 69.168 1.00 68.31 O
TER
ATOM 2 P A A2069 -29.199 -11.968 68.213 1.00 68.28 P
ATOM 3 OP1 A A2069 -28.284 -10.841 68.599 1.00 68.08 O
ATOM 4 OP2 A A2069 -28.632 -13.340 68.100 1.00 68.33 O
ATOM 5 O5' A A2069 -30.479 -11.985 69.168 1.00 68.31 O
ATOM 6 C5' A A2069 -30.702 -10.960 70.123 1.00 68.17 C
ATOM 7 C4' A A2069 -32.142 -10.911 70.520 1.00 68.26 C
ATOM 8 O4' A A2069 -32.903 -10.246 69.480 1.00 68.40 O
ATOM 9 C3' A A2069 -32.817 -12.253 70.674 1.00 68.40 C
ATOM 10 O3' A A2069 -32.592 -12.835 71.944 1.00 68.29 O
ATOM 11 C2' A A2069 -34.274 -11.926 70.392 1.00 68.55 C
ATOM 12 O2' A A2069 -34.865 -11.291 71.516 1.00 68.45 O
ATOM 13 C1' A A2069 -34.127 -10.901 69.270 1.00 68.58 C
ATOM 14 N9 A A2069 -34.040 -11.552 67.968 1.00 68.75 N
ATOM 15 C8 A A2069 -32.945 -11.568 67.141 1.00 68.73 C
ATOM 16 N7 A A2069 -33.110 -12.270 66.052 1.00 68.90 N
ATOM 17 C5 A A2069 -34.395 -12.765 66.183 1.00 69.04 C
ATOM 18 C6 A A2069 -35.174 -13.601 65.370 1.00 69.26 C
ATOM 19 N6 A A2069 -34.773 -14.104 64.208 1.00 69.37 N
ATOM 20 N1 A A2069 -36.425 -13.883 65.793 1.00 69.35 N
ATOM 21 C2 A A2069 -36.852 -13.372 66.960 1.00 69.24 C
ATOM 22 N3 A A2069 -36.207 -12.589 67.838 1.00 69.04 N
ATOM 23 C4 A A2069 -34.976 -12.325 67.370 1.00 68.95 C
ATOM 24 P C A2070 -32.449 -14.432 72.072 1.00 73.07 P
ATOM 25 OP1 C A2070 -32.792 -14.800 73.464 1.00 72.99 O
ATOM 26 OP2 C A2070 -31.110 -14.796 71.547 1.00 73.02 O
ATOM 27 O5' C A2070 -33.572 -14.941 71.059 1.00 73.32 O
TER
ATOM 1 O3' U B2067 -26.402 -8.080 62.119 1.00 79.61 O
ATOM 2 P G B2068 -25.966 -9.475 62.755 1.00 63.23 P
ATOM 3 OP1 G B2068 -24.981 -9.179 63.821 1.00 63.01 O
ATOM 4 OP2 G B2068 -25.565 -10.373 61.624 1.00 63.37 O
ATOM 5 O5' G B2068 -27.326 -10.000 63.398 1.00 63.33 O
ATOM 6 C5' G B2068 -27.740 -9.577 64.696 1.00 63.21 C
ATOM 7 C4' G B2068 -29.079 -10.144 65.049 1.00 63.34 C
ATOM 8 O4' G B2068 -29.872 -10.204 63.847 1.00 63.55 O
ATOM 9 C3' G B2068 -29.056 -11.547 65.641 1.00 63.37 C
ATOM 10 O3' G B2068 -29.852 -11.587 66.799 1.00 63.34 O
ATOM 11 C2' G B2068 -29.694 -12.431 64.576 1.00 63.60 C
ATOM 12 O2' G B2068 -30.530 -13.450 65.089 1.00 63.70 O
ATOM 13 C1' G B2068 -30.491 -11.459 63.722 1.00 63.70 C
ATOM 14 N9 G B2068 -30.484 -11.828 62.310 1.00 63.87 N
ATOM 15 C8 G B2068 -29.412 -11.622 61.489 1.00 63.84 C
ATOM 16 N7 G B2068 -29.597 -12.065 60.286 1.00 64.01 N
ATOM 17 C5 G B2068 -30.863 -12.608 60.317 1.00 64.16 C
ATOM 18 C6 G B2068 -31.587 -13.228 59.280 1.00 64.38 C
ATOM 19 O6 G B2068 -31.208 -13.403 58.120 1.00 64.47 O
ATOM 20 N1 G B2068 -32.836 -13.659 59.698 1.00 64.49 N
ATOM 21 C2 G B2068 -33.333 -13.498 60.957 1.00 64.40 C
ATOM 22 N2 G B2068 -34.570 -13.965 61.162 1.00 64.53 N
ATOM 23 N3 G B2068 -32.659 -12.906 61.937 1.00 64.19 N
ATOM 24 C4 G B2068 -31.434 -12.485 61.558 1.00 64.08 C
ATOM 25 P A B2069 -29.199 -11.968 68.213 1.00 68.28 P
ATOM 26 OP1 A B2069 -28.284 -10.841 68.599 1.00 68.08 O
ATOM 27 OP2 A B2069 -28.632 -13.340 68.100 1.00 68.33 O
ATOM 28 O5' A B2069 -30.479 -11.985 69.168 1.00 68.31 O
TER
Atoms:
OP1: (-28.284,-10.841,68.599)
OP2: (-28.632,-13.340,68.100)
C3': (-32.817,-12.253,70.674)
C1': (-34.127,-10.901,69.270)
C5': (-30.702,-10.960,70.123)
O4': (-32.903,-10.246,69.480)
C8: (-32.945,-11.568,67.141)
O2': (-34.865,-11.291,71.516)
C6: (-35.174,-13.601,65.370)
C5: (-34.395,-12.765,66.183)
C4: (-34.976,-12.325,67.370)
P: (-29.199,-11.968,68.213)
C4': (-32.142,-10.911,70.520)
C2': (-34.274,-11.926,70.392)
C2: (-36.852,-13.372,66.960)
N1: (-36.425,-13.883,65.793)
N3: (-36.207,-12.589,67.838)
N6: (-34.773,-14.104,64.208)
N7: (-33.110,-12.270,66.052)
N9: (-34.040,-11.552,67.968)
O5': (-30.479,-11.985,69.168)
O3': (-32.592,-12.835,71.944)
OP2: (-28.632,-13.340,68.100)
C3': (-32.817,-12.253,70.674)
C1': (-34.127,-10.901,69.270)
C5': (-30.702,-10.960,70.123)
O4': (-32.903,-10.246,69.480)
C8: (-32.945,-11.568,67.141)
O2': (-34.865,-11.291,71.516)
C6: (-35.174,-13.601,65.370)
C5: (-34.395,-12.765,66.183)
C4: (-34.976,-12.325,67.370)
P: (-29.199,-11.968,68.213)
C4': (-32.142,-10.911,70.520)
C2': (-34.274,-11.926,70.392)
C2: (-36.852,-13.372,66.960)
N1: (-36.425,-13.883,65.793)
N3: (-36.207,-12.589,67.838)
N6: (-34.773,-14.104,64.208)
N7: (-33.110,-12.270,66.052)
N9: (-34.040,-11.552,67.968)
O5': (-30.479,-11.985,69.168)
O3': (-32.592,-12.835,71.944)
OP1: (-24.981,-9.179,63.821)
OP2: (-25.565,-10.373,61.624)
C3': (-29.056,-11.547,65.641)
C1': (-30.491,-11.459,63.722)
C5': (-27.740,-9.577,64.696)
O6: (-31.208,-13.403,58.120)
O4': (-29.872,-10.204,63.847)
C8: (-29.412,-11.622,61.489)
C2: (-33.333,-13.498,60.957)
C6: (-31.587,-13.228,59.280)
C5: (-30.863,-12.608,60.317)
C4: (-31.434,-12.485,61.558)
P: (-25.966,-9.475,62.755)
C4': (-29.079,-10.144,65.049)
C2': (-29.694,-12.431,64.576)
O2': (-30.530,-13.450,65.089)
N1: (-32.836,-13.659,59.698)
N2: (-34.570,-13.965,61.162)
N3: (-32.659,-12.906,61.937)
N7: (-29.597,-12.065,60.286)
N9: (-30.484,-11.828,62.310)
O5': (-27.326,-10.000,63.398)
O3': (-29.852,-11.587,66.799)
OP2: (-25.565,-10.373,61.624)
C3': (-29.056,-11.547,65.641)
C1': (-30.491,-11.459,63.722)
C5': (-27.740,-9.577,64.696)
O6: (-31.208,-13.403,58.120)
O4': (-29.872,-10.204,63.847)
C8: (-29.412,-11.622,61.489)
C2: (-33.333,-13.498,60.957)
C6: (-31.587,-13.228,59.280)
C5: (-30.863,-12.608,60.317)
C4: (-31.434,-12.485,61.558)
P: (-25.966,-9.475,62.755)
C4': (-29.079,-10.144,65.049)
C2': (-29.694,-12.431,64.576)
O2': (-30.530,-13.450,65.089)
N1: (-32.836,-13.659,59.698)
N2: (-34.570,-13.965,61.162)
N3: (-32.659,-12.906,61.937)
N7: (-29.597,-12.065,60.286)
N9: (-30.484,-11.828,62.310)
O5': (-27.326,-10.000,63.398)
O3': (-29.852,-11.587,66.799)
Image (generated by PyMOL):