Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11485:11496
Extra
PDB:
ATOM 1 O3' U A1484 33.778 -8.818 136.875 1.00 74.10 O
ATOM 2 P G A1485 33.389 -10.356 136.640 1.00 84.99 P
ATOM 3 OP1 G A1485 34.523 -11.178 137.077 1.00 85.19 O
ATOM 4 OP2 G A1485 32.930 -10.478 135.239 1.00 84.37 O
ATOM 5 O5' G A1485 32.173 -10.549 137.631 1.00 85.42 O
ATOM 6 C5' G A1485 32.392 -10.745 139.008 1.00 86.04 C
ATOM 7 C4' G A1485 31.290 -11.567 139.617 1.00 86.31 C
ATOM 8 O4' G A1485 30.062 -10.791 139.650 1.00 86.33 O
ATOM 9 C3' G A1485 30.911 -12.830 138.861 1.00 85.95 C
ATOM 10 O3' G A1485 31.778 -13.918 139.132 1.00 86.08 O
ATOM 11 C2' G A1485 29.482 -13.057 139.309 1.00 86.15 C
ATOM 12 O2' G A1485 29.457 -13.594 140.628 1.00 86.76 O
ATOM 13 C1' G A1485 28.963 -11.617 139.354 1.00 86.19 C
ATOM 14 N9 G A1485 28.419 -11.189 138.055 1.00 85.61 N
ATOM 15 C8 G A1485 29.048 -10.437 137.068 1.00 85.18 C
ATOM 16 N7 G A1485 28.316 -10.216 135.989 1.00 84.72 N
ATOM 17 C5 G A1485 27.114 -10.865 136.299 1.00 84.86 C
ATOM 18 C6 G A1485 25.901 -11.002 135.542 1.00 84.55 C
ATOM 19 O6 G A1485 25.659 -10.550 134.396 1.00 84.08 O
ATOM 20 N1 G A1485 24.928 -11.757 136.233 1.00 84.86 N
ATOM 21 C2 G A1485 25.089 -12.324 137.495 1.00 85.41 C
ATOM 22 N2 G A1485 24.045 -13.029 138.023 1.00 85.67 N
ATOM 23 N3 G A1485 26.222 -12.197 138.207 1.00 85.70 N
ATOM 24 C4 G A1485 27.173 -11.465 137.563 1.00 85.40 C
ATOM 25 P G A1486 31.974 -15.104 138.055 1.00 74.38 P
ATOM 26 OP1 G A1486 32.896 -16.104 138.673 1.00 74.68 O
ATOM 27 OP2 G A1486 32.364 -14.494 136.744 1.00 73.79 O
ATOM 28 O5' G A1486 30.502 -15.696 137.952 1.00 74.33 O
TER
ATOM 1 O3' C B1495 23.153 -8.872 123.990 1.00 53.47 O
ATOM 2 P G B1496 22.854 -7.363 124.391 1.00 73.71 P
ATOM 3 OP1 G B1496 21.606 -6.972 123.741 1.00 73.36 O
ATOM 4 OP2 G B1496 24.067 -6.588 124.094 1.00 73.89 O
ATOM 5 O5' G B1496 22.643 -7.469 125.957 1.00 74.28 O
ATOM 6 C5' G B1496 21.725 -8.395 126.495 1.00 74.22 C
ATOM 7 C4' G B1496 21.930 -8.560 127.971 1.00 74.79 C
ATOM 8 O4' G B1496 23.196 -9.214 128.215 1.00 74.96 O
ATOM 9 C3' G B1496 22.002 -7.273 128.776 1.00 75.32 C
ATOM 10 O3' G B1496 20.721 -6.781 129.110 1.00 75.36 O
ATOM 11 C2' G B1496 22.809 -7.677 129.995 1.00 75.85 C
ATOM 12 O2' G B1496 21.957 -8.248 130.965 1.00 76.02 O
ATOM 13 C1' G B1496 23.734 -8.777 129.440 1.00 75.58 C
ATOM 14 N9 G B1496 25.132 -8.302 129.221 1.00 75.76 N
ATOM 15 C8 G B1496 25.611 -7.564 128.147 1.00 75.52 C
ATOM 16 N7 G B1496 26.883 -7.276 128.227 1.00 75.78 N
ATOM 17 C5 G B1496 27.272 -7.848 129.426 1.00 76.21 C
ATOM 18 C6 G B1496 28.536 -7.848 130.026 1.00 76.63 C
ATOM 19 O6 G B1496 29.546 -7.320 129.565 1.00 76.67 O
ATOM 20 N1 G B1496 28.567 -8.509 131.242 1.00 77.01 N
ATOM 21 C2 G B1496 27.485 -9.121 131.823 1.00 76.99 C
ATOM 22 N2 G B1496 27.695 -9.731 133.019 1.00 77.40 N
ATOM 23 N3 G B1496 26.274 -9.135 131.256 1.00 76.59 N
ATOM 24 C4 G B1496 26.232 -8.479 130.063 1.00 76.22 C
ATOM 25 P U B1497 20.451 -5.204 129.200 1.00 69.16 P
ATOM 26 OP1 U B1497 19.011 -5.027 129.482 1.00 69.10 O
ATOM 27 OP2 U B1497 21.024 -4.590 127.988 1.00 68.86 O
ATOM 28 O5' U B1497 21.287 -4.763 130.471 1.00 69.84 O
TER
ATOM 2 P G A1485 33.389 -10.356 136.640 1.00 84.99 P
ATOM 3 OP1 G A1485 34.523 -11.178 137.077 1.00 85.19 O
ATOM 4 OP2 G A1485 32.930 -10.478 135.239 1.00 84.37 O
ATOM 5 O5' G A1485 32.173 -10.549 137.631 1.00 85.42 O
ATOM 6 C5' G A1485 32.392 -10.745 139.008 1.00 86.04 C
ATOM 7 C4' G A1485 31.290 -11.567 139.617 1.00 86.31 C
ATOM 8 O4' G A1485 30.062 -10.791 139.650 1.00 86.33 O
ATOM 9 C3' G A1485 30.911 -12.830 138.861 1.00 85.95 C
ATOM 10 O3' G A1485 31.778 -13.918 139.132 1.00 86.08 O
ATOM 11 C2' G A1485 29.482 -13.057 139.309 1.00 86.15 C
ATOM 12 O2' G A1485 29.457 -13.594 140.628 1.00 86.76 O
ATOM 13 C1' G A1485 28.963 -11.617 139.354 1.00 86.19 C
ATOM 14 N9 G A1485 28.419 -11.189 138.055 1.00 85.61 N
ATOM 15 C8 G A1485 29.048 -10.437 137.068 1.00 85.18 C
ATOM 16 N7 G A1485 28.316 -10.216 135.989 1.00 84.72 N
ATOM 17 C5 G A1485 27.114 -10.865 136.299 1.00 84.86 C
ATOM 18 C6 G A1485 25.901 -11.002 135.542 1.00 84.55 C
ATOM 19 O6 G A1485 25.659 -10.550 134.396 1.00 84.08 O
ATOM 20 N1 G A1485 24.928 -11.757 136.233 1.00 84.86 N
ATOM 21 C2 G A1485 25.089 -12.324 137.495 1.00 85.41 C
ATOM 22 N2 G A1485 24.045 -13.029 138.023 1.00 85.67 N
ATOM 23 N3 G A1485 26.222 -12.197 138.207 1.00 85.70 N
ATOM 24 C4 G A1485 27.173 -11.465 137.563 1.00 85.40 C
ATOM 25 P G A1486 31.974 -15.104 138.055 1.00 74.38 P
ATOM 26 OP1 G A1486 32.896 -16.104 138.673 1.00 74.68 O
ATOM 27 OP2 G A1486 32.364 -14.494 136.744 1.00 73.79 O
ATOM 28 O5' G A1486 30.502 -15.696 137.952 1.00 74.33 O
TER
ATOM 1 O3' C B1495 23.153 -8.872 123.990 1.00 53.47 O
ATOM 2 P G B1496 22.854 -7.363 124.391 1.00 73.71 P
ATOM 3 OP1 G B1496 21.606 -6.972 123.741 1.00 73.36 O
ATOM 4 OP2 G B1496 24.067 -6.588 124.094 1.00 73.89 O
ATOM 5 O5' G B1496 22.643 -7.469 125.957 1.00 74.28 O
ATOM 6 C5' G B1496 21.725 -8.395 126.495 1.00 74.22 C
ATOM 7 C4' G B1496 21.930 -8.560 127.971 1.00 74.79 C
ATOM 8 O4' G B1496 23.196 -9.214 128.215 1.00 74.96 O
ATOM 9 C3' G B1496 22.002 -7.273 128.776 1.00 75.32 C
ATOM 10 O3' G B1496 20.721 -6.781 129.110 1.00 75.36 O
ATOM 11 C2' G B1496 22.809 -7.677 129.995 1.00 75.85 C
ATOM 12 O2' G B1496 21.957 -8.248 130.965 1.00 76.02 O
ATOM 13 C1' G B1496 23.734 -8.777 129.440 1.00 75.58 C
ATOM 14 N9 G B1496 25.132 -8.302 129.221 1.00 75.76 N
ATOM 15 C8 G B1496 25.611 -7.564 128.147 1.00 75.52 C
ATOM 16 N7 G B1496 26.883 -7.276 128.227 1.00 75.78 N
ATOM 17 C5 G B1496 27.272 -7.848 129.426 1.00 76.21 C
ATOM 18 C6 G B1496 28.536 -7.848 130.026 1.00 76.63 C
ATOM 19 O6 G B1496 29.546 -7.320 129.565 1.00 76.67 O
ATOM 20 N1 G B1496 28.567 -8.509 131.242 1.00 77.01 N
ATOM 21 C2 G B1496 27.485 -9.121 131.823 1.00 76.99 C
ATOM 22 N2 G B1496 27.695 -9.731 133.019 1.00 77.40 N
ATOM 23 N3 G B1496 26.274 -9.135 131.256 1.00 76.59 N
ATOM 24 C4 G B1496 26.232 -8.479 130.063 1.00 76.22 C
ATOM 25 P U B1497 20.451 -5.204 129.200 1.00 69.16 P
ATOM 26 OP1 U B1497 19.011 -5.027 129.482 1.00 69.10 O
ATOM 27 OP2 U B1497 21.024 -4.590 127.988 1.00 68.86 O
ATOM 28 O5' U B1497 21.287 -4.763 130.471 1.00 69.84 O
TER
Atoms:
OP1: (34.523,-11.178,137.077)
OP2: (32.930,-10.478,135.239)
C3': (30.911,-12.830,138.861)
C1': (28.963,-11.617,139.354)
C5': (32.392,-10.745,139.008)
O6: (25.659,-10.550,134.396)
O4': (30.062,-10.791,139.650)
C8: (29.048,-10.437,137.068)
C2: (25.089,-12.324,137.495)
C6: (25.901,-11.002,135.542)
C5: (27.114,-10.865,136.299)
C4: (27.173,-11.465,137.563)
P: (33.389,-10.356,136.640)
C4': (31.290,-11.567,139.617)
C2': (29.482,-13.057,139.309)
O2': (29.457,-13.594,140.628)
N1: (24.928,-11.757,136.233)
N2: (24.045,-13.029,138.023)
N3: (26.222,-12.197,138.207)
N7: (28.316,-10.216,135.989)
N9: (28.419,-11.189,138.055)
O5': (32.173,-10.549,137.631)
O3': (31.778,-13.918,139.132)
OP2: (32.930,-10.478,135.239)
C3': (30.911,-12.830,138.861)
C1': (28.963,-11.617,139.354)
C5': (32.392,-10.745,139.008)
O6: (25.659,-10.550,134.396)
O4': (30.062,-10.791,139.650)
C8: (29.048,-10.437,137.068)
C2: (25.089,-12.324,137.495)
C6: (25.901,-11.002,135.542)
C5: (27.114,-10.865,136.299)
C4: (27.173,-11.465,137.563)
P: (33.389,-10.356,136.640)
C4': (31.290,-11.567,139.617)
C2': (29.482,-13.057,139.309)
O2': (29.457,-13.594,140.628)
N1: (24.928,-11.757,136.233)
N2: (24.045,-13.029,138.023)
N3: (26.222,-12.197,138.207)
N7: (28.316,-10.216,135.989)
N9: (28.419,-11.189,138.055)
O5': (32.173,-10.549,137.631)
O3': (31.778,-13.918,139.132)
OP1: (21.606,-6.972,123.741)
OP2: (24.067,-6.588,124.094)
C3': (22.002,-7.273,128.776)
C1': (23.734,-8.777,129.440)
C5': (21.725,-8.395,126.495)
O6: (29.546,-7.320,129.565)
O4': (23.196,-9.214,128.215)
C8: (25.611,-7.564,128.147)
C2: (27.485,-9.121,131.823)
C6: (28.536,-7.848,130.026)
C5: (27.272,-7.848,129.426)
C4: (26.232,-8.479,130.063)
P: (22.854,-7.363,124.391)
C4': (21.930,-8.560,127.971)
C2': (22.809,-7.677,129.995)
O2': (21.957,-8.248,130.965)
N1: (28.567,-8.509,131.242)
N2: (27.695,-9.731,133.019)
N3: (26.274,-9.135,131.256)
N7: (26.883,-7.276,128.227)
N9: (25.132,-8.302,129.221)
O5': (22.643,-7.469,125.957)
O3': (20.721,-6.781,129.110)
OP2: (24.067,-6.588,124.094)
C3': (22.002,-7.273,128.776)
C1': (23.734,-8.777,129.440)
C5': (21.725,-8.395,126.495)
O6: (29.546,-7.320,129.565)
O4': (23.196,-9.214,128.215)
C8: (25.611,-7.564,128.147)
C2: (27.485,-9.121,131.823)
C6: (28.536,-7.848,130.026)
C5: (27.272,-7.848,129.426)
C4: (26.232,-8.479,130.063)
P: (22.854,-7.363,124.391)
C4': (21.930,-8.560,127.971)
C2': (22.809,-7.677,129.995)
O2': (21.957,-8.248,130.965)
N1: (28.567,-8.509,131.242)
N2: (27.695,-9.731,133.019)
N3: (26.274,-9.135,131.256)
N7: (26.883,-7.276,128.227)
N9: (25.132,-8.302,129.221)
O5': (22.643,-7.469,125.957)
O3': (20.721,-6.781,129.110)
Image (generated by PyMOL):