Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:13096:13114
Extra
PDB:
ATOM 1 O3' G A3095 -8.400 82.100 92.464 1.00 73.39 O
ATOM 2 P A A3096 -8.973 82.498 93.907 1.00 86.64 P
ATOM 3 OP1 A A3096 -10.007 83.530 93.682 1.00 86.73 O
ATOM 4 OP2 A A3096 -7.802 82.810 94.774 1.00 86.96 O
ATOM 5 O5' A A3096 -9.659 81.171 94.408 1.00 86.61 O
ATOM 6 C5' A A3096 -10.514 80.440 93.561 1.00 86.23 C
ATOM 7 C4' A A3096 -10.526 79.008 93.958 1.00 86.14 C
ATOM 8 O4' A A3096 -9.272 78.398 93.614 1.00 85.91 O
ATOM 9 C3' A A3096 -10.670 78.745 95.447 1.00 86.61 C
ATOM 10 O3' A A3096 -12.020 78.746 95.849 1.00 86.77 O
ATOM 11 C2' A A3096 -9.996 77.385 95.646 1.00 86.46 C
ATOM 12 O2' A A3096 -10.972 76.343 95.647 1.00 86.32 O
ATOM 13 C1' A A3096 -9.125 77.243 94.384 1.00 86.00 C
ATOM 14 N9 A A3096 -7.686 76.960 94.651 1.00 86.02 N
ATOM 15 C8 A A3096 -7.158 75.697 94.424 1.00 85.74 C
ATOM 16 N7 A A3096 -5.895 75.471 94.646 1.00 85.76 N
ATOM 17 C5 A A3096 -5.540 76.703 95.076 1.00 86.09 C
ATOM 18 C6 A A3096 -4.286 77.042 95.467 1.00 86.26 C
ATOM 19 N6 A A3096 -3.322 76.139 95.459 1.00 86.10 N
ATOM 20 N1 A A3096 -4.122 78.313 95.840 1.00 86.58 N
ATOM 21 C2 A A3096 -5.219 79.116 95.812 1.00 86.71 C
ATOM 22 N3 A A3096 -6.496 78.923 95.466 1.00 86.58 N
ATOM 23 C4 A A3096 -6.584 77.649 95.095 1.00 86.26 C
ATOM 24 P G A3097 -12.542 79.801 96.917 1.00 97.61 P
ATOM 25 OP1 G A3097 -13.246 79.047 97.970 1.00 97.87 O
ATOM 26 OP2 G A3097 -13.278 80.836 96.169 1.00 97.53 O
ATOM 27 O5' G A3097 -11.203 80.407 97.503 1.00 97.89 O
TER
ATOM 1 O3' G B3113 1.633 77.842 95.820 1.00 96.40 O
ATOM 2 P A B3114 2.947 78.072 94.931 1.00 76.68 P
ATOM 3 OP1 A B3114 4.105 77.812 95.808 1.00 76.93 O
ATOM 4 OP2 A B3114 2.816 79.418 94.308 1.00 76.68 O
ATOM 5 O5' A B3114 2.844 76.921 93.810 1.00 76.12 O
ATOM 6 C5' A B3114 3.120 75.559 94.126 1.00 76.02 C
ATOM 7 C4' A B3114 2.138 74.603 93.483 1.00 75.66 C
ATOM 8 O4' A B3114 0.786 74.861 93.930 1.00 75.87 O
ATOM 9 C3' A B3114 2.002 74.662 91.975 1.00 75.16 C
ATOM 10 O3' A B3114 3.072 74.060 91.288 1.00 74.82 O
ATOM 11 C2' A B3114 0.665 73.969 91.725 1.00 74.99 C
ATOM 12 O2' A B3114 0.815 72.575 91.563 1.00 74.71 O
ATOM 13 C1' A B3114 -0.093 74.223 93.022 1.00 75.48 C
ATOM 14 N9 A B3114 -1.314 75.012 92.769 1.00 75.53 N
ATOM 15 C8 A B3114 -2.431 74.338 92.295 1.00 75.28 C
ATOM 16 N7 A B3114 -3.494 75.012 91.985 1.00 75.30 N
ATOM 17 C5 A B3114 -3.015 76.250 92.232 1.00 75.56 C
ATOM 18 C6 A B3114 -3.749 77.396 92.076 1.00 75.70 C
ATOM 19 N6 A B3114 -5.003 77.282 91.649 1.00 75.55 N
ATOM 20 N1 A B3114 -3.114 78.556 92.381 1.00 75.97 N
ATOM 21 C2 A B3114 -1.813 78.427 92.805 1.00 76.08 C
ATOM 22 N3 A B3114 -0.972 77.384 93.006 1.00 75.97 N
ATOM 23 C4 A B3114 -1.674 76.308 92.679 1.00 75.71 C
ATOM 24 P U B3115 3.955 74.930 90.271 1.00 70.11 P
ATOM 25 OP1 U B3115 4.987 74.025 89.691 1.00 69.76 O
ATOM 26 OP2 U B3115 4.391 76.160 91.013 1.00 70.55 O
ATOM 27 O5' U B3115 2.918 75.340 89.156 1.00 69.81 O
TER
ATOM 2 P A A3096 -8.973 82.498 93.907 1.00 86.64 P
ATOM 3 OP1 A A3096 -10.007 83.530 93.682 1.00 86.73 O
ATOM 4 OP2 A A3096 -7.802 82.810 94.774 1.00 86.96 O
ATOM 5 O5' A A3096 -9.659 81.171 94.408 1.00 86.61 O
ATOM 6 C5' A A3096 -10.514 80.440 93.561 1.00 86.23 C
ATOM 7 C4' A A3096 -10.526 79.008 93.958 1.00 86.14 C
ATOM 8 O4' A A3096 -9.272 78.398 93.614 1.00 85.91 O
ATOM 9 C3' A A3096 -10.670 78.745 95.447 1.00 86.61 C
ATOM 10 O3' A A3096 -12.020 78.746 95.849 1.00 86.77 O
ATOM 11 C2' A A3096 -9.996 77.385 95.646 1.00 86.46 C
ATOM 12 O2' A A3096 -10.972 76.343 95.647 1.00 86.32 O
ATOM 13 C1' A A3096 -9.125 77.243 94.384 1.00 86.00 C
ATOM 14 N9 A A3096 -7.686 76.960 94.651 1.00 86.02 N
ATOM 15 C8 A A3096 -7.158 75.697 94.424 1.00 85.74 C
ATOM 16 N7 A A3096 -5.895 75.471 94.646 1.00 85.76 N
ATOM 17 C5 A A3096 -5.540 76.703 95.076 1.00 86.09 C
ATOM 18 C6 A A3096 -4.286 77.042 95.467 1.00 86.26 C
ATOM 19 N6 A A3096 -3.322 76.139 95.459 1.00 86.10 N
ATOM 20 N1 A A3096 -4.122 78.313 95.840 1.00 86.58 N
ATOM 21 C2 A A3096 -5.219 79.116 95.812 1.00 86.71 C
ATOM 22 N3 A A3096 -6.496 78.923 95.466 1.00 86.58 N
ATOM 23 C4 A A3096 -6.584 77.649 95.095 1.00 86.26 C
ATOM 24 P G A3097 -12.542 79.801 96.917 1.00 97.61 P
ATOM 25 OP1 G A3097 -13.246 79.047 97.970 1.00 97.87 O
ATOM 26 OP2 G A3097 -13.278 80.836 96.169 1.00 97.53 O
ATOM 27 O5' G A3097 -11.203 80.407 97.503 1.00 97.89 O
TER
ATOM 1 O3' G B3113 1.633 77.842 95.820 1.00 96.40 O
ATOM 2 P A B3114 2.947 78.072 94.931 1.00 76.68 P
ATOM 3 OP1 A B3114 4.105 77.812 95.808 1.00 76.93 O
ATOM 4 OP2 A B3114 2.816 79.418 94.308 1.00 76.68 O
ATOM 5 O5' A B3114 2.844 76.921 93.810 1.00 76.12 O
ATOM 6 C5' A B3114 3.120 75.559 94.126 1.00 76.02 C
ATOM 7 C4' A B3114 2.138 74.603 93.483 1.00 75.66 C
ATOM 8 O4' A B3114 0.786 74.861 93.930 1.00 75.87 O
ATOM 9 C3' A B3114 2.002 74.662 91.975 1.00 75.16 C
ATOM 10 O3' A B3114 3.072 74.060 91.288 1.00 74.82 O
ATOM 11 C2' A B3114 0.665 73.969 91.725 1.00 74.99 C
ATOM 12 O2' A B3114 0.815 72.575 91.563 1.00 74.71 O
ATOM 13 C1' A B3114 -0.093 74.223 93.022 1.00 75.48 C
ATOM 14 N9 A B3114 -1.314 75.012 92.769 1.00 75.53 N
ATOM 15 C8 A B3114 -2.431 74.338 92.295 1.00 75.28 C
ATOM 16 N7 A B3114 -3.494 75.012 91.985 1.00 75.30 N
ATOM 17 C5 A B3114 -3.015 76.250 92.232 1.00 75.56 C
ATOM 18 C6 A B3114 -3.749 77.396 92.076 1.00 75.70 C
ATOM 19 N6 A B3114 -5.003 77.282 91.649 1.00 75.55 N
ATOM 20 N1 A B3114 -3.114 78.556 92.381 1.00 75.97 N
ATOM 21 C2 A B3114 -1.813 78.427 92.805 1.00 76.08 C
ATOM 22 N3 A B3114 -0.972 77.384 93.006 1.00 75.97 N
ATOM 23 C4 A B3114 -1.674 76.308 92.679 1.00 75.71 C
ATOM 24 P U B3115 3.955 74.930 90.271 1.00 70.11 P
ATOM 25 OP1 U B3115 4.987 74.025 89.691 1.00 69.76 O
ATOM 26 OP2 U B3115 4.391 76.160 91.013 1.00 70.55 O
ATOM 27 O5' U B3115 2.918 75.340 89.156 1.00 69.81 O
TER
Atoms:
OP1: (-10.007,83.530,93.682)
OP2: (-7.802,82.810,94.774)
C3': (-10.670,78.745,95.447)
C1': (-9.125,77.243,94.384)
C5': (-10.514,80.440,93.561)
O4': (-9.272,78.398,93.614)
C8: (-7.158,75.697,94.424)
O2': (-10.972,76.343,95.647)
C6: (-4.286,77.042,95.467)
C5: (-5.540,76.703,95.076)
C4: (-6.584,77.649,95.095)
P: (-8.973,82.498,93.907)
C4': (-10.526,79.008,93.958)
C2': (-9.996,77.385,95.646)
C2: (-5.219,79.116,95.812)
N1: (-4.122,78.313,95.840)
N3: (-6.496,78.923,95.466)
N6: (-3.322,76.139,95.459)
N7: (-5.895,75.471,94.646)
N9: (-7.686,76.960,94.651)
O5': (-9.659,81.171,94.408)
O3': (-12.020,78.746,95.849)
OP2: (-7.802,82.810,94.774)
C3': (-10.670,78.745,95.447)
C1': (-9.125,77.243,94.384)
C5': (-10.514,80.440,93.561)
O4': (-9.272,78.398,93.614)
C8: (-7.158,75.697,94.424)
O2': (-10.972,76.343,95.647)
C6: (-4.286,77.042,95.467)
C5: (-5.540,76.703,95.076)
C4: (-6.584,77.649,95.095)
P: (-8.973,82.498,93.907)
C4': (-10.526,79.008,93.958)
C2': (-9.996,77.385,95.646)
C2: (-5.219,79.116,95.812)
N1: (-4.122,78.313,95.840)
N3: (-6.496,78.923,95.466)
N6: (-3.322,76.139,95.459)
N7: (-5.895,75.471,94.646)
N9: (-7.686,76.960,94.651)
O5': (-9.659,81.171,94.408)
O3': (-12.020,78.746,95.849)
OP1: (4.105,77.812,95.808)
OP2: (2.816,79.418,94.308)
C3': (2.002,74.662,91.975)
C1': (-0.093,74.223,93.022)
C5': (3.120,75.559,94.126)
O4': (0.786,74.861,93.930)
C8: (-2.431,74.338,92.295)
O2': (0.815,72.575,91.563)
C6: (-3.749,77.396,92.076)
C5: (-3.015,76.250,92.232)
C4: (-1.674,76.308,92.679)
P: (2.947,78.072,94.931)
C4': (2.138,74.603,93.483)
C2': (0.665,73.969,91.725)
C2: (-1.813,78.427,92.805)
N1: (-3.114,78.556,92.381)
N3: (-0.972,77.384,93.006)
N6: (-5.003,77.282,91.649)
N7: (-3.494,75.012,91.985)
N9: (-1.314,75.012,92.769)
O5': (2.844,76.921,93.810)
O3': (3.072,74.060,91.288)
OP2: (2.816,79.418,94.308)
C3': (2.002,74.662,91.975)
C1': (-0.093,74.223,93.022)
C5': (3.120,75.559,94.126)
O4': (0.786,74.861,93.930)
C8: (-2.431,74.338,92.295)
O2': (0.815,72.575,91.563)
C6: (-3.749,77.396,92.076)
C5: (-3.015,76.250,92.232)
C4: (-1.674,76.308,92.679)
P: (2.947,78.072,94.931)
C4': (2.138,74.603,93.483)
C2': (0.665,73.969,91.725)
C2: (-1.813,78.427,92.805)
N1: (-3.114,78.556,92.381)
N3: (-0.972,77.384,93.006)
N6: (-5.003,77.282,91.649)
N7: (-3.494,75.012,91.985)
N9: (-1.314,75.012,92.769)
O5': (2.844,76.921,93.810)
O3': (3.072,74.060,91.288)
Image (generated by PyMOL):