Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQK:0235:0250
Extra
PDB:
ATOM 1 O3' G A 234 93.557 117.326 -8.170 1.00 63.41 O
ATOM 2 P A A 235 94.030 118.302 -9.353 1.00 62.78 P
ATOM 3 OP1 A A 235 93.522 117.733 -10.628 1.00 64.10 O
ATOM 4 OP2 A A 235 95.492 118.521 -9.178 1.00 61.68 O
ATOM 5 O5' A A 235 93.237 119.654 -9.075 1.00 61.34 O
ATOM 6 C5' A A 235 91.837 119.775 -9.407 1.00 58.83 C
ATOM 7 C4' A A 235 91.229 120.931 -8.651 1.00 59.33 C
ATOM 8 O4' A A 235 91.128 120.588 -7.236 1.00 57.96 O
ATOM 9 C3' A A 235 92.044 122.221 -8.710 1.00 58.21 C
ATOM 10 O3' A A 235 91.172 123.343 -8.611 1.00 60.39 O
ATOM 11 C2' A A 235 92.875 122.120 -7.437 1.00 57.42 C
ATOM 12 O2' A A 235 93.393 123.346 -6.965 1.00 57.54 O
ATOM 13 C1' A A 235 91.843 121.538 -6.475 1.00 56.90 C
ATOM 14 N9 A A 235 92.417 120.882 -5.303 1.00 54.80 N
ATOM 15 C8 A A 235 93.109 119.700 -5.238 1.00 54.56 C
ATOM 16 N7 A A 235 93.540 119.407 -4.038 1.00 52.41 N
ATOM 17 C5 A A 235 93.091 120.462 -3.255 1.00 52.46 C
ATOM 18 C6 A A 235 93.229 120.751 -1.886 1.00 50.13 C
ATOM 19 N6 A A 235 93.895 119.973 -1.031 1.00 48.26 N
ATOM 20 N1 A A 235 92.658 121.882 -1.424 1.00 48.90 N
ATOM 21 C2 A A 235 92.000 122.664 -2.283 1.00 50.85 C
ATOM 22 N3 A A 235 91.807 122.505 -3.588 1.00 53.51 N
ATOM 23 C4 A A 235 92.387 121.370 -4.019 1.00 53.01 C
ATOM 24 P A A 236 90.672 124.090 -9.943 1.00 61.16 P
ATOM 25 OP1 A A 236 91.747 123.964 -10.963 1.00 62.41 O
ATOM 26 OP2 A A 236 90.189 125.442 -9.550 1.00 61.21 O
ATOM 27 O5' A A 236 89.412 123.233 -10.412 1.00 58.80 O
TER
ATOM 1 O3' A B 249 94.987 122.760 3.346 1.00 46.40 O
ATOM 2 P A B 250 96.572 122.762 3.642 1.00 49.16 P
ATOM 3 OP1 A B 250 96.784 122.691 5.100 1.00 51.97 O
ATOM 4 OP2 A B 250 97.206 123.860 2.871 1.00 50.84 O
ATOM 5 O5' A B 250 97.085 121.386 3.034 1.00 48.17 O
ATOM 6 C5' A B 250 96.703 120.972 1.710 1.00 46.70 C
ATOM 7 C4' A B 250 97.462 119.727 1.317 1.00 46.50 C
ATOM 8 O4' A B 250 97.016 119.300 0.003 1.00 48.84 O
ATOM 9 C3' A B 250 98.974 119.891 1.211 1.00 46.15 C
ATOM 10 O3' A B 250 99.589 118.630 1.477 1.00 43.09 O
ATOM 11 C2' A B 250 99.150 120.256 -0.262 1.00 48.60 C
ATOM 12 O2' A B 250 100.441 119.964 -0.761 1.00 49.81 O
ATOM 13 C1' A B 250 98.099 119.355 -0.908 1.00 50.86 C
ATOM 14 N9 A B 250 97.589 119.810 -2.203 1.00 52.90 N
ATOM 15 C8 A B 250 97.705 119.162 -3.407 1.00 51.77 C
ATOM 16 N7 A B 250 97.125 119.788 -4.402 1.00 53.52 N
ATOM 17 C5 A B 250 96.594 120.929 -3.818 1.00 53.15 C
ATOM 18 C6 A B 250 95.851 122.005 -4.341 1.00 53.37 C
ATOM 19 N6 A B 250 95.490 122.108 -5.622 1.00 52.63 N
ATOM 20 N1 A B 250 95.482 122.984 -3.488 1.00 54.38 N
ATOM 21 C2 A B 250 95.831 122.877 -2.202 1.00 54.39 C
ATOM 22 N3 A B 250 96.521 121.915 -1.591 1.00 54.44 N
ATOM 23 C4 A B 250 96.878 120.960 -2.464 1.00 53.27 C
ATOM 24 P U B 251 100.701 118.496 2.632 1.00 44.84 P
ATOM 25 OP1 U B 251 101.496 119.753 2.723 1.00 44.65 O
ATOM 26 OP2 U B 251 101.406 117.198 2.430 1.00 41.01 O
ATOM 27 O5' U B 251 99.835 118.385 3.967 1.00 45.74 O
TER
ATOM 2 P A A 235 94.030 118.302 -9.353 1.00 62.78 P
ATOM 3 OP1 A A 235 93.522 117.733 -10.628 1.00 64.10 O
ATOM 4 OP2 A A 235 95.492 118.521 -9.178 1.00 61.68 O
ATOM 5 O5' A A 235 93.237 119.654 -9.075 1.00 61.34 O
ATOM 6 C5' A A 235 91.837 119.775 -9.407 1.00 58.83 C
ATOM 7 C4' A A 235 91.229 120.931 -8.651 1.00 59.33 C
ATOM 8 O4' A A 235 91.128 120.588 -7.236 1.00 57.96 O
ATOM 9 C3' A A 235 92.044 122.221 -8.710 1.00 58.21 C
ATOM 10 O3' A A 235 91.172 123.343 -8.611 1.00 60.39 O
ATOM 11 C2' A A 235 92.875 122.120 -7.437 1.00 57.42 C
ATOM 12 O2' A A 235 93.393 123.346 -6.965 1.00 57.54 O
ATOM 13 C1' A A 235 91.843 121.538 -6.475 1.00 56.90 C
ATOM 14 N9 A A 235 92.417 120.882 -5.303 1.00 54.80 N
ATOM 15 C8 A A 235 93.109 119.700 -5.238 1.00 54.56 C
ATOM 16 N7 A A 235 93.540 119.407 -4.038 1.00 52.41 N
ATOM 17 C5 A A 235 93.091 120.462 -3.255 1.00 52.46 C
ATOM 18 C6 A A 235 93.229 120.751 -1.886 1.00 50.13 C
ATOM 19 N6 A A 235 93.895 119.973 -1.031 1.00 48.26 N
ATOM 20 N1 A A 235 92.658 121.882 -1.424 1.00 48.90 N
ATOM 21 C2 A A 235 92.000 122.664 -2.283 1.00 50.85 C
ATOM 22 N3 A A 235 91.807 122.505 -3.588 1.00 53.51 N
ATOM 23 C4 A A 235 92.387 121.370 -4.019 1.00 53.01 C
ATOM 24 P A A 236 90.672 124.090 -9.943 1.00 61.16 P
ATOM 25 OP1 A A 236 91.747 123.964 -10.963 1.00 62.41 O
ATOM 26 OP2 A A 236 90.189 125.442 -9.550 1.00 61.21 O
ATOM 27 O5' A A 236 89.412 123.233 -10.412 1.00 58.80 O
TER
ATOM 1 O3' A B 249 94.987 122.760 3.346 1.00 46.40 O
ATOM 2 P A B 250 96.572 122.762 3.642 1.00 49.16 P
ATOM 3 OP1 A B 250 96.784 122.691 5.100 1.00 51.97 O
ATOM 4 OP2 A B 250 97.206 123.860 2.871 1.00 50.84 O
ATOM 5 O5' A B 250 97.085 121.386 3.034 1.00 48.17 O
ATOM 6 C5' A B 250 96.703 120.972 1.710 1.00 46.70 C
ATOM 7 C4' A B 250 97.462 119.727 1.317 1.00 46.50 C
ATOM 8 O4' A B 250 97.016 119.300 0.003 1.00 48.84 O
ATOM 9 C3' A B 250 98.974 119.891 1.211 1.00 46.15 C
ATOM 10 O3' A B 250 99.589 118.630 1.477 1.00 43.09 O
ATOM 11 C2' A B 250 99.150 120.256 -0.262 1.00 48.60 C
ATOM 12 O2' A B 250 100.441 119.964 -0.761 1.00 49.81 O
ATOM 13 C1' A B 250 98.099 119.355 -0.908 1.00 50.86 C
ATOM 14 N9 A B 250 97.589 119.810 -2.203 1.00 52.90 N
ATOM 15 C8 A B 250 97.705 119.162 -3.407 1.00 51.77 C
ATOM 16 N7 A B 250 97.125 119.788 -4.402 1.00 53.52 N
ATOM 17 C5 A B 250 96.594 120.929 -3.818 1.00 53.15 C
ATOM 18 C6 A B 250 95.851 122.005 -4.341 1.00 53.37 C
ATOM 19 N6 A B 250 95.490 122.108 -5.622 1.00 52.63 N
ATOM 20 N1 A B 250 95.482 122.984 -3.488 1.00 54.38 N
ATOM 21 C2 A B 250 95.831 122.877 -2.202 1.00 54.39 C
ATOM 22 N3 A B 250 96.521 121.915 -1.591 1.00 54.44 N
ATOM 23 C4 A B 250 96.878 120.960 -2.464 1.00 53.27 C
ATOM 24 P U B 251 100.701 118.496 2.632 1.00 44.84 P
ATOM 25 OP1 U B 251 101.496 119.753 2.723 1.00 44.65 O
ATOM 26 OP2 U B 251 101.406 117.198 2.430 1.00 41.01 O
ATOM 27 O5' U B 251 99.835 118.385 3.967 1.00 45.74 O
TER
Atoms:
OP1: (93.522,117.733,-10.628)
OP2: (95.492,118.521,-9.178)
C3': (92.044,122.221,-8.710)
C1': (91.843,121.538,-6.475)
C5': (91.837,119.775,-9.407)
O4': (91.128,120.588,-7.236)
C8: (93.109,119.700,-5.238)
O2': (93.393,123.346,-6.965)
C6: (93.229,120.751,-1.886)
C5: (93.091,120.462,-3.255)
C4: (92.387,121.370,-4.019)
P: (94.030,118.302,-9.353)
C4': (91.229,120.931,-8.651)
C2': (92.875,122.120,-7.437)
C2: (92.000,122.664,-2.283)
N1: (92.658,121.882,-1.424)
N3: (91.807,122.505,-3.588)
N6: (93.895,119.973,-1.031)
N7: (93.540,119.407,-4.038)
N9: (92.417,120.882,-5.303)
O5': (93.237,119.654,-9.075)
O3': (91.172,123.343,-8.611)
OP2: (95.492,118.521,-9.178)
C3': (92.044,122.221,-8.710)
C1': (91.843,121.538,-6.475)
C5': (91.837,119.775,-9.407)
O4': (91.128,120.588,-7.236)
C8: (93.109,119.700,-5.238)
O2': (93.393,123.346,-6.965)
C6: (93.229,120.751,-1.886)
C5: (93.091,120.462,-3.255)
C4: (92.387,121.370,-4.019)
P: (94.030,118.302,-9.353)
C4': (91.229,120.931,-8.651)
C2': (92.875,122.120,-7.437)
C2: (92.000,122.664,-2.283)
N1: (92.658,121.882,-1.424)
N3: (91.807,122.505,-3.588)
N6: (93.895,119.973,-1.031)
N7: (93.540,119.407,-4.038)
N9: (92.417,120.882,-5.303)
O5': (93.237,119.654,-9.075)
O3': (91.172,123.343,-8.611)
OP1: (96.784,122.691,5.100)
OP2: (97.206,123.860,2.871)
C3': (98.974,119.891,1.211)
C1': (98.099,119.355,-0.908)
C5': (96.703,120.972,1.710)
O4': (97.016,119.300,0.003)
C8: (97.705,119.162,-3.407)
O2': (100.441,119.964,-0.761)
C6: (95.851,122.005,-4.341)
C5: (96.594,120.929,-3.818)
C4: (96.878,120.960,-2.464)
P: (96.572,122.762,3.642)
C4': (97.462,119.727,1.317)
C2': (99.150,120.256,-0.262)
C2: (95.831,122.877,-2.202)
N1: (95.482,122.984,-3.488)
N3: (96.521,121.915,-1.591)
N6: (95.490,122.108,-5.622)
N7: (97.125,119.788,-4.402)
N9: (97.589,119.810,-2.203)
O5': (97.085,121.386,3.034)
O3': (99.589,118.630,1.477)
OP2: (97.206,123.860,2.871)
C3': (98.974,119.891,1.211)
C1': (98.099,119.355,-0.908)
C5': (96.703,120.972,1.710)
O4': (97.016,119.300,0.003)
C8: (97.705,119.162,-3.407)
O2': (100.441,119.964,-0.761)
C6: (95.851,122.005,-4.341)
C5: (96.594,120.929,-3.818)
C4: (96.878,120.960,-2.464)
P: (96.572,122.762,3.642)
C4': (97.462,119.727,1.317)
C2': (99.150,120.256,-0.262)
C2: (95.831,122.877,-2.202)
N1: (95.482,122.984,-3.488)
N3: (96.521,121.915,-1.591)
N6: (95.490,122.108,-5.622)
N7: (97.125,119.788,-4.402)
N9: (97.589,119.810,-2.203)
O5': (97.085,121.386,3.034)
O3': (99.589,118.630,1.477)
Image (generated by PyMOL):