Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0366:0398
Extra
PDB:
ATOM 1 O3' C A 365 92.612 102.280 5.774 1.00 61.70 O
ATOM 2 P A A 366 92.712 101.757 7.291 1.00 63.72 P
ATOM 3 OP1 A A 366 93.436 102.805 8.064 1.00 62.23 O
ATOM 4 OP2 A A 366 93.220 100.356 7.294 1.00 62.16 O
ATOM 5 O5' A A 366 91.195 101.718 7.781 1.00 63.40 O
ATOM 6 C5' A A 366 90.413 102.928 7.885 1.00 62.31 C
ATOM 7 C4' A A 366 89.005 102.609 8.335 1.00 61.97 C
ATOM 8 O4' A A 366 88.282 101.916 7.284 1.00 62.85 O
ATOM 9 C3' A A 366 88.894 101.686 9.535 1.00 61.13 C
ATOM 10 O3' A A 366 89.076 102.401 10.746 1.00 60.19 O
ATOM 11 C2' A A 366 87.488 101.116 9.386 1.00 61.50 C
ATOM 12 O2' A A 366 86.475 101.973 9.873 1.00 60.53 O
ATOM 13 C1' A A 366 87.373 100.990 7.863 1.00 61.96 C
ATOM 14 N9 A A 366 87.688 99.647 7.369 1.00 61.63 N
ATOM 15 C8 A A 366 88.921 99.085 7.125 1.00 60.82 C
ATOM 16 N7 A A 366 88.861 97.843 6.711 1.00 59.71 N
ATOM 17 C5 A A 366 87.501 97.567 6.677 1.00 60.21 C
ATOM 18 C6 A A 366 86.778 96.412 6.336 1.00 60.04 C
ATOM 19 N6 A A 366 87.345 95.265 5.962 1.00 60.53 N
ATOM 20 N1 A A 366 85.431 96.472 6.401 1.00 60.76 N
ATOM 21 C2 A A 366 84.857 97.617 6.792 1.00 60.83 C
ATOM 22 N3 A A 366 85.427 98.765 7.146 1.00 61.56 N
ATOM 23 C4 A A 366 86.767 98.673 7.067 1.00 61.13 C
ATOM 24 P G A 367 89.284 101.600 12.117 1.00 60.89 P
ATOM 25 OP1 G A 367 90.463 100.707 11.972 1.00 59.49 O
ATOM 26 OP2 G A 367 87.964 101.026 12.495 1.00 60.21 O
ATOM 27 O5' G A 367 89.650 102.734 13.168 1.00 57.95 O
TER
ATOM 1 O3' U B 397 92.705 93.145 9.240 1.00 70.19 O
ATOM 2 P A B 398 92.590 92.689 7.712 1.00 70.43 P
ATOM 3 OP1 A B 398 93.655 91.692 7.413 1.00 69.13 O
ATOM 4 OP2 A B 398 92.474 93.914 6.877 1.00 71.42 O
ATOM 5 O5' A B 398 91.177 91.967 7.673 1.00 71.31 O
ATOM 6 C5' A B 398 90.947 90.752 8.402 1.00 70.99 C
ATOM 7 C4' A B 398 89.478 90.420 8.390 1.00 71.16 C
ATOM 8 O4' A B 398 88.771 91.320 9.290 1.00 71.73 O
ATOM 9 C3' A B 398 88.798 90.563 7.031 1.00 71.37 C
ATOM 10 O3' A B 398 87.812 89.556 6.876 1.00 73.32 O
ATOM 11 C2' A B 398 88.140 91.936 7.132 1.00 70.19 C
ATOM 12 O2' A B 398 87.015 92.102 6.301 1.00 69.63 O
ATOM 13 C1' A B 398 87.716 91.951 8.594 1.00 70.42 C
ATOM 14 N9 A B 398 87.531 93.299 9.125 1.00 70.29 N
ATOM 15 C8 A B 398 88.487 94.244 9.421 1.00 69.76 C
ATOM 16 N7 A B 398 87.992 95.377 9.857 1.00 69.44 N
ATOM 17 C5 A B 398 86.619 95.163 9.856 1.00 70.43 C
ATOM 18 C6 A B 398 85.532 95.987 10.207 1.00 70.69 C
ATOM 19 N6 A B 398 85.672 97.243 10.646 1.00 70.67 N
ATOM 20 N1 A B 398 84.284 95.470 10.091 1.00 70.12 N
ATOM 21 C2 A B 398 84.151 94.212 9.651 1.00 69.42 C
ATOM 22 N3 A B 398 85.095 93.340 9.290 1.00 70.17 N
ATOM 23 C4 A B 398 86.321 93.885 9.416 1.00 70.39 C
ATOM 24 P A B 399 88.061 88.363 5.833 1.00 74.07 P
ATOM 25 OP1 A B 399 88.633 88.950 4.593 1.00 75.03 O
ATOM 26 OP2 A B 399 86.816 87.554 5.756 1.00 73.82 O
ATOM 27 O5' A B 399 89.211 87.506 6.522 1.00 73.83 O
TER
ATOM 2 P A A 366 92.712 101.757 7.291 1.00 63.72 P
ATOM 3 OP1 A A 366 93.436 102.805 8.064 1.00 62.23 O
ATOM 4 OP2 A A 366 93.220 100.356 7.294 1.00 62.16 O
ATOM 5 O5' A A 366 91.195 101.718 7.781 1.00 63.40 O
ATOM 6 C5' A A 366 90.413 102.928 7.885 1.00 62.31 C
ATOM 7 C4' A A 366 89.005 102.609 8.335 1.00 61.97 C
ATOM 8 O4' A A 366 88.282 101.916 7.284 1.00 62.85 O
ATOM 9 C3' A A 366 88.894 101.686 9.535 1.00 61.13 C
ATOM 10 O3' A A 366 89.076 102.401 10.746 1.00 60.19 O
ATOM 11 C2' A A 366 87.488 101.116 9.386 1.00 61.50 C
ATOM 12 O2' A A 366 86.475 101.973 9.873 1.00 60.53 O
ATOM 13 C1' A A 366 87.373 100.990 7.863 1.00 61.96 C
ATOM 14 N9 A A 366 87.688 99.647 7.369 1.00 61.63 N
ATOM 15 C8 A A 366 88.921 99.085 7.125 1.00 60.82 C
ATOM 16 N7 A A 366 88.861 97.843 6.711 1.00 59.71 N
ATOM 17 C5 A A 366 87.501 97.567 6.677 1.00 60.21 C
ATOM 18 C6 A A 366 86.778 96.412 6.336 1.00 60.04 C
ATOM 19 N6 A A 366 87.345 95.265 5.962 1.00 60.53 N
ATOM 20 N1 A A 366 85.431 96.472 6.401 1.00 60.76 N
ATOM 21 C2 A A 366 84.857 97.617 6.792 1.00 60.83 C
ATOM 22 N3 A A 366 85.427 98.765 7.146 1.00 61.56 N
ATOM 23 C4 A A 366 86.767 98.673 7.067 1.00 61.13 C
ATOM 24 P G A 367 89.284 101.600 12.117 1.00 60.89 P
ATOM 25 OP1 G A 367 90.463 100.707 11.972 1.00 59.49 O
ATOM 26 OP2 G A 367 87.964 101.026 12.495 1.00 60.21 O
ATOM 27 O5' G A 367 89.650 102.734 13.168 1.00 57.95 O
TER
ATOM 1 O3' U B 397 92.705 93.145 9.240 1.00 70.19 O
ATOM 2 P A B 398 92.590 92.689 7.712 1.00 70.43 P
ATOM 3 OP1 A B 398 93.655 91.692 7.413 1.00 69.13 O
ATOM 4 OP2 A B 398 92.474 93.914 6.877 1.00 71.42 O
ATOM 5 O5' A B 398 91.177 91.967 7.673 1.00 71.31 O
ATOM 6 C5' A B 398 90.947 90.752 8.402 1.00 70.99 C
ATOM 7 C4' A B 398 89.478 90.420 8.390 1.00 71.16 C
ATOM 8 O4' A B 398 88.771 91.320 9.290 1.00 71.73 O
ATOM 9 C3' A B 398 88.798 90.563 7.031 1.00 71.37 C
ATOM 10 O3' A B 398 87.812 89.556 6.876 1.00 73.32 O
ATOM 11 C2' A B 398 88.140 91.936 7.132 1.00 70.19 C
ATOM 12 O2' A B 398 87.015 92.102 6.301 1.00 69.63 O
ATOM 13 C1' A B 398 87.716 91.951 8.594 1.00 70.42 C
ATOM 14 N9 A B 398 87.531 93.299 9.125 1.00 70.29 N
ATOM 15 C8 A B 398 88.487 94.244 9.421 1.00 69.76 C
ATOM 16 N7 A B 398 87.992 95.377 9.857 1.00 69.44 N
ATOM 17 C5 A B 398 86.619 95.163 9.856 1.00 70.43 C
ATOM 18 C6 A B 398 85.532 95.987 10.207 1.00 70.69 C
ATOM 19 N6 A B 398 85.672 97.243 10.646 1.00 70.67 N
ATOM 20 N1 A B 398 84.284 95.470 10.091 1.00 70.12 N
ATOM 21 C2 A B 398 84.151 94.212 9.651 1.00 69.42 C
ATOM 22 N3 A B 398 85.095 93.340 9.290 1.00 70.17 N
ATOM 23 C4 A B 398 86.321 93.885 9.416 1.00 70.39 C
ATOM 24 P A B 399 88.061 88.363 5.833 1.00 74.07 P
ATOM 25 OP1 A B 399 88.633 88.950 4.593 1.00 75.03 O
ATOM 26 OP2 A B 399 86.816 87.554 5.756 1.00 73.82 O
ATOM 27 O5' A B 399 89.211 87.506 6.522 1.00 73.83 O
TER
Atoms:
OP1: (93.436,102.805,8.064)
OP2: (93.220,100.356,7.294)
C3': (88.894,101.686,9.535)
C1': (87.373,100.990,7.863)
C5': (90.413,102.928,7.885)
O4': (88.282,101.916,7.284)
C8: (88.921,99.085,7.125)
O2': (86.475,101.973,9.873)
C6: (86.778,96.412,6.336)
C5: (87.501,97.567,6.677)
C4: (86.767,98.673,7.067)
P: (92.712,101.757,7.291)
C4': (89.005,102.609,8.335)
C2': (87.488,101.116,9.386)
C2: (84.857,97.617,6.792)
N1: (85.431,96.472,6.401)
N3: (85.427,98.765,7.146)
N6: (87.345,95.265,5.962)
N7: (88.861,97.843,6.711)
N9: (87.688,99.647,7.369)
O5': (91.195,101.718,7.781)
O3': (89.076,102.401,10.746)
OP2: (93.220,100.356,7.294)
C3': (88.894,101.686,9.535)
C1': (87.373,100.990,7.863)
C5': (90.413,102.928,7.885)
O4': (88.282,101.916,7.284)
C8: (88.921,99.085,7.125)
O2': (86.475,101.973,9.873)
C6: (86.778,96.412,6.336)
C5: (87.501,97.567,6.677)
C4: (86.767,98.673,7.067)
P: (92.712,101.757,7.291)
C4': (89.005,102.609,8.335)
C2': (87.488,101.116,9.386)
C2: (84.857,97.617,6.792)
N1: (85.431,96.472,6.401)
N3: (85.427,98.765,7.146)
N6: (87.345,95.265,5.962)
N7: (88.861,97.843,6.711)
N9: (87.688,99.647,7.369)
O5': (91.195,101.718,7.781)
O3': (89.076,102.401,10.746)
OP1: (93.655,91.692,7.413)
OP2: (92.474,93.914,6.877)
C3': (88.798,90.563,7.031)
C1': (87.716,91.951,8.594)
C5': (90.947,90.752,8.402)
O4': (88.771,91.320,9.290)
C8: (88.487,94.244,9.421)
O2': (87.015,92.102,6.301)
C6: (85.532,95.987,10.207)
C5: (86.619,95.163,9.856)
C4: (86.321,93.885,9.416)
P: (92.590,92.689,7.712)
C4': (89.478,90.420,8.390)
C2': (88.140,91.936,7.132)
C2: (84.151,94.212,9.651)
N1: (84.284,95.470,10.091)
N3: (85.095,93.340,9.290)
N6: (85.672,97.243,10.646)
N7: (87.992,95.377,9.857)
N9: (87.531,93.299,9.125)
O5': (91.177,91.967,7.673)
O3': (87.812,89.556,6.876)
OP2: (92.474,93.914,6.877)
C3': (88.798,90.563,7.031)
C1': (87.716,91.951,8.594)
C5': (90.947,90.752,8.402)
O4': (88.771,91.320,9.290)
C8: (88.487,94.244,9.421)
O2': (87.015,92.102,6.301)
C6: (85.532,95.987,10.207)
C5: (86.619,95.163,9.856)
C4: (86.321,93.885,9.416)
P: (92.590,92.689,7.712)
C4': (89.478,90.420,8.390)
C2': (88.140,91.936,7.132)
C2: (84.151,94.212,9.651)
N1: (84.284,95.470,10.091)
N3: (85.095,93.340,9.290)
N6: (85.672,97.243,10.646)
N7: (87.992,95.377,9.857)
N9: (87.531,93.299,9.125)
O5': (91.177,91.967,7.673)
O3': (87.812,89.556,6.876)
Image (generated by PyMOL):