ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQ4:0235:0250

Extra

PDB:
ATOM 1 O3' G A 234 94.177 118.559 -7.627 1.00 72.90 O
ATOM 2 P A A 235 94.732 119.582 -8.731 1.00 72.25 P
ATOM 3 OP1 A A 235 94.318 119.084 -10.067 1.00 72.95 O
ATOM 4 OP2 A A 235 96.173 119.806 -8.441 1.00 70.43 O
ATOM 5 O5' A A 235 93.927 120.919 -8.437 1.00 71.30 O
ATOM 6 C5' A A 235 92.515 121.013 -8.708 1.00 70.79 C
ATOM 7 C4' A A 235 91.940 122.198 -7.978 1.00 71.21 C
ATOM 8 O4' A A 235 91.876 121.901 -6.553 1.00 71.19 O
ATOM 9 C3' A A 235 92.787 123.462 -8.101 1.00 71.03 C
ATOM 10 O3' A A 235 91.951 124.603 -8.006 1.00 72.39 O
ATOM 11 C2' A A 235 93.664 123.380 -6.860 1.00 70.62 C
ATOM 12 O2' A A 235 94.203 124.624 -6.463 1.00 69.39 O
ATOM 13 C1' A A 235 92.662 122.836 -5.842 1.00 70.88 C
ATOM 14 N9 A A 235 93.258 122.163 -4.690 1.00 71.00 N
ATOM 15 C8 A A 235 94.037 121.031 -4.667 1.00 71.45 C
ATOM 16 N7 A A 235 94.434 120.689 -3.466 1.00 70.72 N
ATOM 17 C5 A A 235 93.872 121.654 -2.642 1.00 69.63 C
ATOM 18 C6 A A 235 93.922 121.855 -1.257 1.00 68.46 C
ATOM 19 N6 A A 235 94.587 121.061 -0.417 1.00 67.64 N
ATOM 20 N1 A A 235 93.259 122.916 -0.753 1.00 68.55 N
ATOM 21 C2 A A 235 92.593 123.715 -1.594 1.00 69.71 C
ATOM 22 N3 A A 235 92.469 123.630 -2.913 1.00 69.90 N
ATOM 23 C4 A A 235 93.143 122.565 -3.382 1.00 70.27 C
ATOM 24 P A A 236 91.504 125.371 -9.336 1.00 73.68 P
ATOM 25 OP1 A A 236 92.583 125.186 -10.347 1.00 74.19 O
ATOM 26 OP2 A A 236 91.099 126.741 -8.931 1.00 74.08 O
ATOM 27 O5' A A 236 90.201 124.587 -9.824 1.00 71.69 O
TER

ATOM 1 O3' A B 249 95.546 124.011 4.031 1.00 63.63 O
ATOM 2 P A B 250 97.127 123.998 4.318 1.00 63.74 P
ATOM 3 OP1 A B 250 97.355 123.910 5.776 1.00 64.50 O
ATOM 4 OP2 A B 250 97.729 125.111 3.555 1.00 65.42 O
ATOM 5 O5' A B 250 97.631 122.624 3.690 1.00 64.80 O
ATOM 6 C5' A B 250 97.239 122.221 2.366 1.00 64.92 C
ATOM 7 C4' A B 250 98.013 120.991 1.949 1.00 65.90 C
ATOM 8 O4' A B 250 97.598 120.605 0.608 1.00 67.41 O
ATOM 9 C3' A B 250 99.526 121.179 1.872 1.00 65.82 C
ATOM 10 O3' A B 250 100.166 119.926 2.118 1.00 63.22 O
ATOM 11 C2' A B 250 99.719 121.578 0.412 1.00 66.61 C
ATOM 12 O2' A B 250 101.032 121.371 -0.064 1.00 66.43 O
ATOM 13 C1' A B 250 98.715 120.645 -0.261 1.00 67.99 C
ATOM 14 N9 A B 250 98.254 121.038 -1.591 1.00 68.84 N
ATOM 15 C8 A B 250 98.425 120.333 -2.756 1.00 69.38 C
ATOM 16 N7 A B 250 97.875 120.897 -3.802 1.00 70.61 N
ATOM 17 C5 A B 250 97.311 122.058 -3.296 1.00 70.38 C
ATOM 18 C6 A B 250 96.580 123.095 -3.902 1.00 70.81 C
ATOM 19 N6 A B 250 96.286 123.129 -5.202 1.00 71.38 N
ATOM 20 N1 A B 250 96.160 124.110 -3.117 1.00 71.32 N
ATOM 21 C2 A B 250 96.464 124.076 -1.812 1.00 71.37 C
ATOM 22 N3 A B 250 97.145 123.158 -1.127 1.00 70.75 N
ATOM 23 C4 A B 250 97.544 122.163 -1.936 1.00 69.78 C
ATOM 24 P U B 251 101.294 119.805 3.257 1.00 62.98 P
ATOM 25 OP1 U B 251 102.066 121.061 3.355 1.00 62.58 O
ATOM 26 OP2 U B 251 102.009 118.516 3.058 1.00 61.63 O
ATOM 27 O5' U B 251 100.454 119.671 4.597 1.00 65.42 O
TER

Atoms:
OP1: (94.318,119.084,-10.067)
OP2: (96.173,119.806,-8.441)
C3': (92.787,123.462,-8.101)
C1': (92.662,122.836,-5.842)
C5': (92.515,121.013,-8.708)
O4': (91.876,121.901,-6.553)
C8: (94.037,121.031,-4.667)
O2': (94.203,124.624,-6.463)
C6: (93.922,121.855,-1.257)
C5: (93.872,121.654,-2.642)
C4: (93.143,122.565,-3.382)
P: (94.732,119.582,-8.731)
C4': (91.940,122.198,-7.978)
C2': (93.664,123.380,-6.860)
C2: (92.593,123.715,-1.594)
N1: (93.259,122.916,-0.753)
N3: (92.469,123.630,-2.913)
N6: (94.587,121.061,-0.417)
N7: (94.434,120.689,-3.466)
N9: (93.258,122.163,-4.690)
O5': (93.927,120.919,-8.437)
O3': (91.951,124.603,-8.006)
OP1: (97.355,123.910,5.776)
OP2: (97.729,125.111,3.555)
C3': (99.526,121.179,1.872)
C1': (98.715,120.645,-0.261)
C5': (97.239,122.221,2.366)
O4': (97.598,120.605,0.608)
C8: (98.425,120.333,-2.756)
O2': (101.032,121.371,-0.064)
C6: (96.580,123.095,-3.902)
C5: (97.311,122.058,-3.296)
C4: (97.544,122.163,-1.936)
P: (97.127,123.998,4.318)
C4': (98.013,120.991,1.949)
C2': (99.719,121.578,0.412)
C2: (96.464,124.076,-1.812)
N1: (96.160,124.110,-3.117)
N3: (97.145,123.158,-1.127)
N6: (96.286,123.129,-5.202)
N7: (97.875,120.897,-3.802)
N9: (98.254,121.038,-1.591)
O5': (97.631,122.624,3.690)
O3': (100.166,119.926,2.118)
Image (generated by PyMOL):
PyMOL image
show in jmol