ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YHQ:0235:0250

Extra

PDB:
ATOM 1 O3' G A 234 93.927 117.543 -8.003 1.00 52.82 O
ATOM 2 P A A 235 94.479 118.543 -9.132 1.00 52.81 P
ATOM 3 OP1 A A 235 94.033 118.008 -10.446 1.00 51.67 O
ATOM 4 OP2 A A 235 95.929 118.757 -8.878 1.00 50.28 O
ATOM 5 O5' A A 235 93.691 119.896 -8.855 1.00 50.53 O
ATOM 6 C5' A A 235 92.280 120.000 -9.140 1.00 50.54 C
ATOM 7 C4' A A 235 91.684 121.160 -8.378 1.00 50.98 C
ATOM 8 O4' A A 235 91.578 120.823 -6.962 1.00 50.06 O
ATOM 9 C3' A A 235 92.518 122.435 -8.446 1.00 49.99 C
ATOM 10 O3' A A 235 91.664 123.564 -8.378 1.00 50.11 O
ATOM 11 C2' A A 235 93.348 122.337 -7.173 1.00 49.87 C
ATOM 12 O2' A A 235 93.858 123.570 -6.715 1.00 49.77 O
ATOM 13 C1' A A 235 92.318 121.759 -6.204 1.00 50.09 C
ATOM 14 N9 A A 235 92.908 121.081 -5.050 1.00 49.79 N
ATOM 15 C8 A A 235 93.645 119.921 -5.022 1.00 49.51 C
ATOM 16 N7 A A 235 94.070 119.596 -3.827 1.00 48.53 N
ATOM 17 C5 A A 235 93.571 120.602 -3.010 1.00 47.10 C
ATOM 18 C6 A A 235 93.675 120.838 -1.631 1.00 44.62 C
ATOM 19 N6 A A 235 94.343 120.043 -0.796 1.00 43.19 N
ATOM 20 N1 A A 235 93.062 121.931 -1.133 1.00 43.84 N
ATOM 21 C2 A A 235 92.391 122.727 -1.970 1.00 44.52 C
ATOM 22 N3 A A 235 92.220 122.613 -3.282 1.00 46.98 N
ATOM 23 C4 A A 235 92.845 121.517 -3.748 1.00 47.72 C
ATOM 24 P A A 236 91.155 124.252 -9.732 1.00 52.03 P
ATOM 25 OP1 A A 236 92.218 124.059 -10.751 1.00 51.48 O
ATOM 26 OP2 A A 236 90.681 125.627 -9.405 1.00 51.81 O
ATOM 27 O5' A A 236 89.885 123.388 -10.159 1.00 50.44 O
TER

ATOM 1 O3' A B 249 95.404 122.895 3.565 1.00 38.73 O
ATOM 2 P A B 250 96.988 122.886 3.862 1.00 40.35 P
ATOM 3 OP1 A B 250 97.199 122.790 5.321 1.00 40.68 O
ATOM 4 OP2 A B 250 97.619 123.998 3.113 1.00 41.03 O
ATOM 5 O5' A B 250 97.495 121.515 3.232 1.00 39.06 O
ATOM 6 C5' A B 250 97.078 121.096 1.921 1.00 37.63 C
ATOM 7 C4' A B 250 97.832 119.847 1.520 1.00 39.48 C
ATOM 8 O4' A B 250 97.407 119.429 0.192 1.00 40.50 O
ATOM 9 C3' A B 250 99.344 120.009 1.432 1.00 38.71 C
ATOM 10 O3' A B 250 99.948 118.745 1.702 1.00 36.85 O
ATOM 11 C2' A B 250 99.533 120.392 -0.035 1.00 39.92 C
ATOM 12 O2' A B 250 100.828 120.144 -0.541 1.00 41.73 O
ATOM 13 C1' A B 250 98.508 119.475 -0.695 1.00 41.70 C
ATOM 14 N9 A B 250 98.028 119.910 -2.006 1.00 44.29 N
ATOM 15 C8 A B 250 98.166 119.233 -3.193 1.00 44.43 C
ATOM 16 N7 A B 250 97.608 119.836 -4.214 1.00 45.64 N
ATOM 17 C5 A B 250 97.069 120.992 -3.666 1.00 45.01 C
ATOM 18 C6 A B 250 96.341 122.056 -4.230 1.00 44.86 C
ATOM 19 N6 A B 250 96.010 122.127 -5.522 1.00 42.95 N
ATOM 20 N1 A B 250 95.957 123.057 -3.407 1.00 45.68 N
ATOM 21 C2 A B 250 96.285 122.983 -2.112 1.00 44.88 C
ATOM 22 N3 A B 250 96.961 122.034 -1.465 1.00 44.78 N
ATOM 23 C4 A B 250 97.328 121.055 -2.308 1.00 44.40 C
ATOM 24 P U B 251 101.059 118.610 2.857 1.00 38.62 P
ATOM 25 OP1 U B 251 101.859 119.863 2.949 1.00 38.33 O
ATOM 26 OP2 U B 251 101.757 117.315 2.668 1.00 36.07 O
ATOM 27 O5' U B 251 100.191 118.501 4.186 1.00 40.04 O
TER

Atoms:
OP1: (94.033,118.008,-10.446)
OP2: (95.929,118.757,-8.878)
C3': (92.518,122.435,-8.446)
C1': (92.318,121.759,-6.204)
C5': (92.280,120.000,-9.140)
O4': (91.578,120.823,-6.962)
C8: (93.645,119.921,-5.022)
O2': (93.858,123.570,-6.715)
C6: (93.675,120.838,-1.631)
C5: (93.571,120.602,-3.010)
C4: (92.845,121.517,-3.748)
P: (94.479,118.543,-9.132)
C4': (91.684,121.160,-8.378)
C2': (93.348,122.337,-7.173)
C2: (92.391,122.727,-1.970)
N1: (93.062,121.931,-1.133)
N3: (92.220,122.613,-3.282)
N6: (94.343,120.043,-0.796)
N7: (94.070,119.596,-3.827)
N9: (92.908,121.081,-5.050)
O5': (93.691,119.896,-8.855)
O3': (91.664,123.564,-8.378)
OP1: (97.199,122.790,5.321)
OP2: (97.619,123.998,3.113)
C3': (99.344,120.009,1.432)
C1': (98.508,119.475,-0.695)
C5': (97.078,121.096,1.921)
O4': (97.407,119.429,0.192)
C8: (98.166,119.233,-3.193)
O2': (100.828,120.144,-0.541)
C6: (96.341,122.056,-4.230)
C5: (97.069,120.992,-3.666)
C4: (97.328,121.055,-2.308)
P: (96.988,122.886,3.862)
C4': (97.832,119.847,1.520)
C2': (99.533,120.392,-0.035)
C2: (96.285,122.983,-2.112)
N1: (95.957,123.057,-3.407)
N3: (96.961,122.034,-1.465)
N6: (96.010,122.127,-5.522)
N7: (97.608,119.836,-4.214)
N9: (98.028,119.910,-2.006)
O5': (97.495,121.515,3.232)
O3': (99.948,118.745,1.702)
Image (generated by PyMOL):
PyMOL image
show in jmol