Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01190:02394
Extra
PDB:
ATOM 1 O3' A A1189 51.887 108.245 135.278 1.00 38.66 O
ATOM 2 P A A1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 3 OP1 A A1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 4 OP2 A A1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 5 O5' A A1190 53.635 109.948 134.678 1.00 40.74 O
ATOM 6 C5' A A1190 53.542 110.229 133.265 1.00 39.11 C
ATOM 7 C4' A A1190 54.547 111.288 132.885 1.00 38.10 C
ATOM 8 O4' A A1190 55.881 110.742 132.999 1.00 39.33 O
ATOM 9 C3' A A1190 54.526 111.757 131.445 1.00 37.73 C
ATOM 10 O3' A A1190 53.478 112.693 131.242 1.00 37.74 O
ATOM 11 C2' A A1190 55.896 112.414 131.314 1.00 38.19 C
ATOM 12 O2' A A1190 55.934 113.703 131.890 1.00 37.77 O
ATOM 13 C1' A A1190 56.757 111.489 132.177 1.00 39.22 C
ATOM 14 N9 A A1190 57.608 110.560 131.438 1.00 40.45 N
ATOM 15 C8 A A1190 57.329 109.869 130.286 1.00 41.72 C
ATOM 16 N7 A A1190 58.317 109.115 129.870 1.00 42.13 N
ATOM 17 C5 A A1190 59.313 109.323 130.812 1.00 42.80 C
ATOM 18 C6 A A1190 60.617 108.813 130.941 1.00 43.23 C
ATOM 19 N6 A A1190 61.164 107.946 130.088 1.00 42.14 N
ATOM 20 N1 A A1190 61.351 109.228 131.997 1.00 44.54 N
ATOM 21 C2 A A1190 60.802 110.089 132.860 1.00 43.26 C
ATOM 22 N3 A A1190 59.588 110.635 132.848 1.00 43.03 N
ATOM 23 C4 A A1190 58.887 110.208 131.785 1.00 42.02 C
ATOM 24 P A A1191 52.715 112.747 129.828 1.00 37.99 P
ATOM 25 OP1 A A1191 51.415 113.423 130.072 1.00 37.80 O
ATOM 26 OP2 A A1191 52.739 111.389 129.226 1.00 37.48 O
ATOM 27 O5' A A1191 53.617 113.702 128.934 1.00 34.70 O
TER
ATOM 1 O3' C B2393 58.299 115.816 134.330 1.00 37.01 O
ATOM 2 P A B2394 57.655 114.737 135.329 1.00 39.70 P
ATOM 3 OP1 A B2394 56.687 113.902 134.570 1.00 40.13 O
ATOM 4 OP2 A B2394 57.195 115.437 136.547 1.00 41.67 O
ATOM 5 O5' A B2394 58.916 113.843 135.719 1.00 39.52 O
ATOM 6 C5' A B2394 59.725 113.227 134.702 1.00 36.83 C
ATOM 7 C4' A B2394 61.194 113.490 134.959 1.00 38.62 C
ATOM 8 O4' A B2394 61.996 112.746 134.007 1.00 39.28 O
ATOM 9 C3' A B2394 61.656 114.932 134.817 1.00 39.89 C
ATOM 10 O3' A B2394 62.867 115.084 135.549 1.00 40.18 O
ATOM 11 C2' A B2394 61.972 115.014 133.331 1.00 41.16 C
ATOM 12 O2' A B2394 62.888 116.050 133.036 1.00 42.70 O
ATOM 13 C1' A B2394 62.597 113.638 133.085 1.00 41.75 C
ATOM 14 N9 A B2394 62.395 113.079 131.749 1.00 43.56 N
ATOM 15 C8 A B2394 63.308 112.369 131.012 1.00 45.22 C
ATOM 16 N7 A B2394 62.837 111.928 129.872 1.00 46.22 N
ATOM 17 C5 A B2394 61.530 112.391 129.849 1.00 44.74 C
ATOM 18 C6 A B2394 60.497 112.247 128.914 1.00 44.68 C
ATOM 19 N6 A B2394 60.622 111.563 127.774 1.00 43.44 N
ATOM 20 N1 A B2394 59.312 112.832 129.194 1.00 44.43 N
ATOM 21 C2 A B2394 59.187 113.509 130.340 1.00 43.28 C
ATOM 22 N3 A B2394 60.082 113.711 131.298 1.00 43.45 N
ATOM 23 C4 A B2394 61.248 113.116 130.990 1.00 43.87 C
ATOM 24 P U B2395 62.862 115.808 136.980 1.00 43.34 P
ATOM 25 OP1 U B2395 64.120 115.386 137.650 1.00 42.85 O
ATOM 26 OP2 U B2395 61.553 115.556 137.644 1.00 44.07 O
ATOM 27 O5' U B2395 62.974 117.360 136.643 1.00 39.19 O
TER
ATOM 2 P A A1190 52.330 109.760 135.576 1.00 40.96 P
ATOM 3 OP1 A A1190 52.768 109.877 136.984 1.00 41.06 O
ATOM 4 OP2 A A1190 51.252 110.648 135.076 1.00 40.64 O
ATOM 5 O5' A A1190 53.635 109.948 134.678 1.00 40.74 O
ATOM 6 C5' A A1190 53.542 110.229 133.265 1.00 39.11 C
ATOM 7 C4' A A1190 54.547 111.288 132.885 1.00 38.10 C
ATOM 8 O4' A A1190 55.881 110.742 132.999 1.00 39.33 O
ATOM 9 C3' A A1190 54.526 111.757 131.445 1.00 37.73 C
ATOM 10 O3' A A1190 53.478 112.693 131.242 1.00 37.74 O
ATOM 11 C2' A A1190 55.896 112.414 131.314 1.00 38.19 C
ATOM 12 O2' A A1190 55.934 113.703 131.890 1.00 37.77 O
ATOM 13 C1' A A1190 56.757 111.489 132.177 1.00 39.22 C
ATOM 14 N9 A A1190 57.608 110.560 131.438 1.00 40.45 N
ATOM 15 C8 A A1190 57.329 109.869 130.286 1.00 41.72 C
ATOM 16 N7 A A1190 58.317 109.115 129.870 1.00 42.13 N
ATOM 17 C5 A A1190 59.313 109.323 130.812 1.00 42.80 C
ATOM 18 C6 A A1190 60.617 108.813 130.941 1.00 43.23 C
ATOM 19 N6 A A1190 61.164 107.946 130.088 1.00 42.14 N
ATOM 20 N1 A A1190 61.351 109.228 131.997 1.00 44.54 N
ATOM 21 C2 A A1190 60.802 110.089 132.860 1.00 43.26 C
ATOM 22 N3 A A1190 59.588 110.635 132.848 1.00 43.03 N
ATOM 23 C4 A A1190 58.887 110.208 131.785 1.00 42.02 C
ATOM 24 P A A1191 52.715 112.747 129.828 1.00 37.99 P
ATOM 25 OP1 A A1191 51.415 113.423 130.072 1.00 37.80 O
ATOM 26 OP2 A A1191 52.739 111.389 129.226 1.00 37.48 O
ATOM 27 O5' A A1191 53.617 113.702 128.934 1.00 34.70 O
TER
ATOM 1 O3' C B2393 58.299 115.816 134.330 1.00 37.01 O
ATOM 2 P A B2394 57.655 114.737 135.329 1.00 39.70 P
ATOM 3 OP1 A B2394 56.687 113.902 134.570 1.00 40.13 O
ATOM 4 OP2 A B2394 57.195 115.437 136.547 1.00 41.67 O
ATOM 5 O5' A B2394 58.916 113.843 135.719 1.00 39.52 O
ATOM 6 C5' A B2394 59.725 113.227 134.702 1.00 36.83 C
ATOM 7 C4' A B2394 61.194 113.490 134.959 1.00 38.62 C
ATOM 8 O4' A B2394 61.996 112.746 134.007 1.00 39.28 O
ATOM 9 C3' A B2394 61.656 114.932 134.817 1.00 39.89 C
ATOM 10 O3' A B2394 62.867 115.084 135.549 1.00 40.18 O
ATOM 11 C2' A B2394 61.972 115.014 133.331 1.00 41.16 C
ATOM 12 O2' A B2394 62.888 116.050 133.036 1.00 42.70 O
ATOM 13 C1' A B2394 62.597 113.638 133.085 1.00 41.75 C
ATOM 14 N9 A B2394 62.395 113.079 131.749 1.00 43.56 N
ATOM 15 C8 A B2394 63.308 112.369 131.012 1.00 45.22 C
ATOM 16 N7 A B2394 62.837 111.928 129.872 1.00 46.22 N
ATOM 17 C5 A B2394 61.530 112.391 129.849 1.00 44.74 C
ATOM 18 C6 A B2394 60.497 112.247 128.914 1.00 44.68 C
ATOM 19 N6 A B2394 60.622 111.563 127.774 1.00 43.44 N
ATOM 20 N1 A B2394 59.312 112.832 129.194 1.00 44.43 N
ATOM 21 C2 A B2394 59.187 113.509 130.340 1.00 43.28 C
ATOM 22 N3 A B2394 60.082 113.711 131.298 1.00 43.45 N
ATOM 23 C4 A B2394 61.248 113.116 130.990 1.00 43.87 C
ATOM 24 P U B2395 62.862 115.808 136.980 1.00 43.34 P
ATOM 25 OP1 U B2395 64.120 115.386 137.650 1.00 42.85 O
ATOM 26 OP2 U B2395 61.553 115.556 137.644 1.00 44.07 O
ATOM 27 O5' U B2395 62.974 117.360 136.643 1.00 39.19 O
TER
Atoms:
OP1: (52.768,109.877,136.984)
OP2: (51.252,110.648,135.076)
C3': (54.526,111.757,131.445)
C1': (56.757,111.489,132.177)
C5': (53.542,110.229,133.265)
O4': (55.881,110.742,132.999)
C8: (57.329,109.869,130.286)
O2': (55.934,113.703,131.890)
C6: (60.617,108.813,130.941)
C5: (59.313,109.323,130.812)
C4: (58.887,110.208,131.785)
P: (52.330,109.760,135.576)
C4': (54.547,111.288,132.885)
C2': (55.896,112.414,131.314)
C2: (60.802,110.089,132.860)
N1: (61.351,109.228,131.997)
N3: (59.588,110.635,132.848)
N6: (61.164,107.946,130.088)
N7: (58.317,109.115,129.870)
N9: (57.608,110.560,131.438)
O5': (53.635,109.948,134.678)
O3': (53.478,112.693,131.242)
OP2: (51.252,110.648,135.076)
C3': (54.526,111.757,131.445)
C1': (56.757,111.489,132.177)
C5': (53.542,110.229,133.265)
O4': (55.881,110.742,132.999)
C8: (57.329,109.869,130.286)
O2': (55.934,113.703,131.890)
C6: (60.617,108.813,130.941)
C5: (59.313,109.323,130.812)
C4: (58.887,110.208,131.785)
P: (52.330,109.760,135.576)
C4': (54.547,111.288,132.885)
C2': (55.896,112.414,131.314)
C2: (60.802,110.089,132.860)
N1: (61.351,109.228,131.997)
N3: (59.588,110.635,132.848)
N6: (61.164,107.946,130.088)
N7: (58.317,109.115,129.870)
N9: (57.608,110.560,131.438)
O5': (53.635,109.948,134.678)
O3': (53.478,112.693,131.242)
OP1: (56.687,113.902,134.570)
OP2: (57.195,115.437,136.547)
C3': (61.656,114.932,134.817)
C1': (62.597,113.638,133.085)
C5': (59.725,113.227,134.702)
O4': (61.996,112.746,134.007)
C8: (63.308,112.369,131.012)
O2': (62.888,116.050,133.036)
C6: (60.497,112.247,128.914)
C5: (61.530,112.391,129.849)
C4: (61.248,113.116,130.990)
P: (57.655,114.737,135.329)
C4': (61.194,113.490,134.959)
C2': (61.972,115.014,133.331)
C2: (59.187,113.509,130.340)
N1: (59.312,112.832,129.194)
N3: (60.082,113.711,131.298)
N6: (60.622,111.563,127.774)
N7: (62.837,111.928,129.872)
N9: (62.395,113.079,131.749)
O5': (58.916,113.843,135.719)
O3': (62.867,115.084,135.549)
OP2: (57.195,115.437,136.547)
C3': (61.656,114.932,134.817)
C1': (62.597,113.638,133.085)
C5': (59.725,113.227,134.702)
O4': (61.996,112.746,134.007)
C8: (63.308,112.369,131.012)
O2': (62.888,116.050,133.036)
C6: (60.497,112.247,128.914)
C5: (61.530,112.391,129.849)
C4: (61.248,113.116,130.990)
P: (57.655,114.737,135.329)
C4': (61.194,113.490,134.959)
C2': (61.972,115.014,133.331)
C2: (59.187,113.509,130.340)
N1: (59.312,112.832,129.194)
N3: (60.082,113.711,131.298)
N6: (60.622,111.563,127.774)
N7: (62.837,111.928,129.872)
N9: (62.395,113.079,131.749)
O5': (58.916,113.843,135.719)
O3': (62.867,115.084,135.549)
Image (generated by PyMOL):