Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0235:0250
Extra
PDB:
ATOM 1 O3' G A 234 94.162 118.005 -7.854 1.00 67.33 O
ATOM 2 P A A 235 94.751 119.007 -8.961 1.00 65.19 P
ATOM 3 OP1 A A 235 94.353 118.484 -10.293 1.00 66.10 O
ATOM 4 OP2 A A 235 96.196 119.209 -8.652 1.00 62.56 O
ATOM 5 O5' A A 235 93.948 120.356 -8.707 1.00 62.29 O
ATOM 6 C5' A A 235 92.543 120.452 -9.022 1.00 62.82 C
ATOM 7 C4' A A 235 91.928 121.612 -8.273 1.00 63.81 C
ATOM 8 O4' A A 235 91.828 121.282 -6.856 1.00 63.20 O
ATOM 9 C3' A A 235 92.739 122.903 -8.343 1.00 63.34 C
ATOM 10 O3' A A 235 91.861 124.014 -8.229 1.00 64.91 O
ATOM 11 C2' A A 235 93.584 122.809 -7.080 1.00 62.75 C
ATOM 12 O2' A A 235 94.090 124.045 -6.628 1.00 60.92 O
ATOM 13 C1' A A 235 92.563 122.226 -6.104 1.00 63.15 C
ATOM 14 N9 A A 235 93.141 121.557 -4.940 1.00 63.22 N
ATOM 15 C8 A A 235 93.891 120.404 -4.894 1.00 63.24 C
ATOM 16 N7 A A 235 94.279 120.077 -3.686 1.00 62.65 N
ATOM 17 C5 A A 235 93.744 121.075 -2.882 1.00 61.15 C
ATOM 18 C6 A A 235 93.797 121.303 -1.500 1.00 59.05 C
ATOM 19 N6 A A 235 94.446 120.514 -0.645 1.00 57.71 N
ATOM 20 N1 A A 235 93.156 122.386 -1.019 1.00 59.11 N
ATOM 21 C2 A A 235 92.512 123.183 -1.876 1.00 60.78 C
ATOM 22 N3 A A 235 92.391 123.077 -3.193 1.00 61.93 N
ATOM 23 C4 A A 235 93.038 121.989 -3.640 1.00 61.74 C
ATOM 24 P A A 236 91.372 124.784 -9.546 1.00 67.08 P
ATOM 25 OP1 A A 236 92.432 124.634 -10.579 1.00 66.75 O
ATOM 26 OP2 A A 236 90.933 126.143 -9.124 1.00 65.96 O
ATOM 27 O5' A A 236 90.078 123.979 -10.021 1.00 64.75 O
TER
ATOM 1 O3' A B 249 95.483 123.443 3.751 1.00 53.80 O
ATOM 2 P A B 250 97.056 123.442 4.084 1.00 53.83 P
ATOM 3 OP1 A B 250 97.217 123.379 5.553 1.00 54.26 O
ATOM 4 OP2 A B 250 97.683 124.557 3.336 1.00 55.93 O
ATOM 5 O5' A B 250 97.582 122.066 3.472 1.00 53.02 O
ATOM 6 C5' A B 250 97.174 121.630 2.156 1.00 53.43 C
ATOM 7 C4' A B 250 97.969 120.411 1.734 1.00 55.04 C
ATOM 8 O4' A B 250 97.563 120.014 0.391 1.00 57.86 O
ATOM 9 C3' A B 250 99.478 120.614 1.652 1.00 55.66 C
ATOM 10 O3' A B 250 100.116 119.362 1.891 1.00 53.39 O
ATOM 11 C2' A B 250 99.668 121.011 0.190 1.00 56.84 C
ATOM 12 O2' A B 250 100.976 120.808 -0.303 1.00 58.36 O
ATOM 13 C1' A B 250 98.680 120.064 -0.479 1.00 58.10 C
ATOM 14 N9 A B 250 98.224 120.461 -1.811 1.00 59.20 N
ATOM 15 C8 A B 250 98.425 119.772 -2.981 1.00 59.65 C
ATOM 16 N7 A B 250 97.869 120.332 -4.028 1.00 61.01 N
ATOM 17 C5 A B 250 97.269 121.474 -3.517 1.00 60.30 C
ATOM 18 C6 A B 250 96.510 122.496 -4.117 1.00 60.26 C
ATOM 19 N6 A B 250 96.208 122.531 -5.418 1.00 59.09 N
ATOM 20 N1 A B 250 96.061 123.493 -3.324 1.00 60.85 N
ATOM 21 C2 A B 250 96.358 123.456 -2.020 1.00 60.43 C
ATOM 22 N3 A B 250 97.058 122.550 -1.338 1.00 60.55 N
ATOM 23 C4 A B 250 97.490 121.573 -2.153 1.00 59.97 C
ATOM 24 P U B 251 101.211 119.229 3.055 1.00 53.60 P
ATOM 25 OP1 U B 251 101.978 120.496 3.182 1.00 51.68 O
ATOM 26 OP2 U B 251 101.937 117.946 2.839 1.00 51.41 O
ATOM 27 O5' U B 251 100.329 119.087 4.371 1.00 55.49 O
TER
ATOM 2 P A A 235 94.751 119.007 -8.961 1.00 65.19 P
ATOM 3 OP1 A A 235 94.353 118.484 -10.293 1.00 66.10 O
ATOM 4 OP2 A A 235 96.196 119.209 -8.652 1.00 62.56 O
ATOM 5 O5' A A 235 93.948 120.356 -8.707 1.00 62.29 O
ATOM 6 C5' A A 235 92.543 120.452 -9.022 1.00 62.82 C
ATOM 7 C4' A A 235 91.928 121.612 -8.273 1.00 63.81 C
ATOM 8 O4' A A 235 91.828 121.282 -6.856 1.00 63.20 O
ATOM 9 C3' A A 235 92.739 122.903 -8.343 1.00 63.34 C
ATOM 10 O3' A A 235 91.861 124.014 -8.229 1.00 64.91 O
ATOM 11 C2' A A 235 93.584 122.809 -7.080 1.00 62.75 C
ATOM 12 O2' A A 235 94.090 124.045 -6.628 1.00 60.92 O
ATOM 13 C1' A A 235 92.563 122.226 -6.104 1.00 63.15 C
ATOM 14 N9 A A 235 93.141 121.557 -4.940 1.00 63.22 N
ATOM 15 C8 A A 235 93.891 120.404 -4.894 1.00 63.24 C
ATOM 16 N7 A A 235 94.279 120.077 -3.686 1.00 62.65 N
ATOM 17 C5 A A 235 93.744 121.075 -2.882 1.00 61.15 C
ATOM 18 C6 A A 235 93.797 121.303 -1.500 1.00 59.05 C
ATOM 19 N6 A A 235 94.446 120.514 -0.645 1.00 57.71 N
ATOM 20 N1 A A 235 93.156 122.386 -1.019 1.00 59.11 N
ATOM 21 C2 A A 235 92.512 123.183 -1.876 1.00 60.78 C
ATOM 22 N3 A A 235 92.391 123.077 -3.193 1.00 61.93 N
ATOM 23 C4 A A 235 93.038 121.989 -3.640 1.00 61.74 C
ATOM 24 P A A 236 91.372 124.784 -9.546 1.00 67.08 P
ATOM 25 OP1 A A 236 92.432 124.634 -10.579 1.00 66.75 O
ATOM 26 OP2 A A 236 90.933 126.143 -9.124 1.00 65.96 O
ATOM 27 O5' A A 236 90.078 123.979 -10.021 1.00 64.75 O
TER
ATOM 1 O3' A B 249 95.483 123.443 3.751 1.00 53.80 O
ATOM 2 P A B 250 97.056 123.442 4.084 1.00 53.83 P
ATOM 3 OP1 A B 250 97.217 123.379 5.553 1.00 54.26 O
ATOM 4 OP2 A B 250 97.683 124.557 3.336 1.00 55.93 O
ATOM 5 O5' A B 250 97.582 122.066 3.472 1.00 53.02 O
ATOM 6 C5' A B 250 97.174 121.630 2.156 1.00 53.43 C
ATOM 7 C4' A B 250 97.969 120.411 1.734 1.00 55.04 C
ATOM 8 O4' A B 250 97.563 120.014 0.391 1.00 57.86 O
ATOM 9 C3' A B 250 99.478 120.614 1.652 1.00 55.66 C
ATOM 10 O3' A B 250 100.116 119.362 1.891 1.00 53.39 O
ATOM 11 C2' A B 250 99.668 121.011 0.190 1.00 56.84 C
ATOM 12 O2' A B 250 100.976 120.808 -0.303 1.00 58.36 O
ATOM 13 C1' A B 250 98.680 120.064 -0.479 1.00 58.10 C
ATOM 14 N9 A B 250 98.224 120.461 -1.811 1.00 59.20 N
ATOM 15 C8 A B 250 98.425 119.772 -2.981 1.00 59.65 C
ATOM 16 N7 A B 250 97.869 120.332 -4.028 1.00 61.01 N
ATOM 17 C5 A B 250 97.269 121.474 -3.517 1.00 60.30 C
ATOM 18 C6 A B 250 96.510 122.496 -4.117 1.00 60.26 C
ATOM 19 N6 A B 250 96.208 122.531 -5.418 1.00 59.09 N
ATOM 20 N1 A B 250 96.061 123.493 -3.324 1.00 60.85 N
ATOM 21 C2 A B 250 96.358 123.456 -2.020 1.00 60.43 C
ATOM 22 N3 A B 250 97.058 122.550 -1.338 1.00 60.55 N
ATOM 23 C4 A B 250 97.490 121.573 -2.153 1.00 59.97 C
ATOM 24 P U B 251 101.211 119.229 3.055 1.00 53.60 P
ATOM 25 OP1 U B 251 101.978 120.496 3.182 1.00 51.68 O
ATOM 26 OP2 U B 251 101.937 117.946 2.839 1.00 51.41 O
ATOM 27 O5' U B 251 100.329 119.087 4.371 1.00 55.49 O
TER
Atoms:
OP1: (94.353,118.484,-10.293)
OP2: (96.196,119.209,-8.652)
C3': (92.739,122.903,-8.343)
C1': (92.563,122.226,-6.104)
C5': (92.543,120.452,-9.022)
O4': (91.828,121.282,-6.856)
C8: (93.891,120.404,-4.894)
O2': (94.090,124.045,-6.628)
C6: (93.797,121.303,-1.500)
C5: (93.744,121.075,-2.882)
C4: (93.038,121.989,-3.640)
P: (94.751,119.007,-8.961)
C4': (91.928,121.612,-8.273)
C2': (93.584,122.809,-7.080)
C2: (92.512,123.183,-1.876)
N1: (93.156,122.386,-1.019)
N3: (92.391,123.077,-3.193)
N6: (94.446,120.514,-0.645)
N7: (94.279,120.077,-3.686)
N9: (93.141,121.557,-4.940)
O5': (93.948,120.356,-8.707)
O3': (91.861,124.014,-8.229)
OP2: (96.196,119.209,-8.652)
C3': (92.739,122.903,-8.343)
C1': (92.563,122.226,-6.104)
C5': (92.543,120.452,-9.022)
O4': (91.828,121.282,-6.856)
C8: (93.891,120.404,-4.894)
O2': (94.090,124.045,-6.628)
C6: (93.797,121.303,-1.500)
C5: (93.744,121.075,-2.882)
C4: (93.038,121.989,-3.640)
P: (94.751,119.007,-8.961)
C4': (91.928,121.612,-8.273)
C2': (93.584,122.809,-7.080)
C2: (92.512,123.183,-1.876)
N1: (93.156,122.386,-1.019)
N3: (92.391,123.077,-3.193)
N6: (94.446,120.514,-0.645)
N7: (94.279,120.077,-3.686)
N9: (93.141,121.557,-4.940)
O5': (93.948,120.356,-8.707)
O3': (91.861,124.014,-8.229)
OP1: (97.217,123.379,5.553)
OP2: (97.683,124.557,3.336)
C3': (99.478,120.614,1.652)
C1': (98.680,120.064,-0.479)
C5': (97.174,121.630,2.156)
O4': (97.563,120.014,0.391)
C8: (98.425,119.772,-2.981)
O2': (100.976,120.808,-0.303)
C6: (96.510,122.496,-4.117)
C5: (97.269,121.474,-3.517)
C4: (97.490,121.573,-2.153)
P: (97.056,123.442,4.084)
C4': (97.969,120.411,1.734)
C2': (99.668,121.011,0.190)
C2: (96.358,123.456,-2.020)
N1: (96.061,123.493,-3.324)
N3: (97.058,122.550,-1.338)
N6: (96.208,122.531,-5.418)
N7: (97.869,120.332,-4.028)
N9: (98.224,120.461,-1.811)
O5': (97.582,122.066,3.472)
O3': (100.116,119.362,1.891)
OP2: (97.683,124.557,3.336)
C3': (99.478,120.614,1.652)
C1': (98.680,120.064,-0.479)
C5': (97.174,121.630,2.156)
O4': (97.563,120.014,0.391)
C8: (98.425,119.772,-2.981)
O2': (100.976,120.808,-0.303)
C6: (96.510,122.496,-4.117)
C5: (97.269,121.474,-3.517)
C4: (97.490,121.573,-2.153)
P: (97.056,123.442,4.084)
C4': (97.969,120.411,1.734)
C2': (99.668,121.011,0.190)
C2: (96.358,123.456,-2.020)
N1: (96.061,123.493,-3.324)
N3: (97.058,122.550,-1.338)
N6: (96.208,122.531,-5.418)
N7: (97.869,120.332,-4.028)
N9: (98.224,120.461,-1.811)
O5': (97.582,122.066,3.472)
O3': (100.116,119.362,1.891)
Image (generated by PyMOL):