Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A21:A54
Extra
PDB:
ATOM 1 O3' U A 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 2 P A A 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 3 OP1 A A 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 4 OP2 A A 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 5 O5' A A 21 -12.428 13.434 22.080 1.00 45.12 O
ATOM 6 C5' A A 21 -13.274 12.288 22.083 1.00 38.16 C
ATOM 7 C4' A A 21 -12.480 11.004 22.118 1.00 32.73 C
ATOM 8 O4' A A 21 -11.736 10.859 20.873 1.00 30.90 O
ATOM 9 C3' A A 21 -11.448 10.898 23.244 1.00 31.97 C
ATOM 10 O3' A A 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 11 C2' A A 21 -10.150 11.266 22.529 1.00 31.77 C
ATOM 12 O2' A A 21 -8.977 10.788 23.151 1.00 34.75 O
ATOM 13 C1' A A 21 -10.380 10.611 21.175 1.00 30.07 C
ATOM 14 N9 A A 21 -9.541 11.135 20.093 1.00 32.57 N
ATOM 15 C8 A A 21 -8.828 12.308 20.030 1.00 31.56 C
ATOM 16 N7 A A 21 -8.150 12.454 18.914 1.00 31.30 N
ATOM 17 C5 A A 21 -8.422 11.294 18.198 1.00 30.65 C
ATOM 18 C6 A A 21 -8.010 10.826 16.933 1.00 27.64 C
ATOM 19 N6 A A 21 -7.195 11.492 16.113 1.00 30.60 N
ATOM 20 N1 A A 21 -8.472 9.627 16.522 1.00 24.46 N
ATOM 21 C2 A A 21 -9.288 8.946 17.332 1.00 26.49 C
ATOM 22 N3 A A 21 -9.744 9.275 18.538 1.00 29.11 N
ATOM 23 C4 A A 21 -9.269 10.472 18.919 1.00 30.53 C
ATOM 24 P A A 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 25 OP1 A A 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 26 OP2 A A 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 27 O5' A A 22 -11.448 7.683 25.347 1.00 33.18 O
TER
ATOM 1 O3' G B 53 1.056 13.463 22.100 1.00 35.88 O
ATOM 2 P A B 54 0.234 14.676 21.444 1.00 40.45 P
ATOM 3 OP1 A B 54 1.232 15.644 20.921 1.00 45.22 O
ATOM 4 OP2 A B 54 -0.750 15.140 22.452 1.00 31.08 O
ATOM 5 O5' A B 54 -0.522 13.964 20.238 1.00 34.39 O
ATOM 6 C5' A B 54 0.106 12.923 19.500 1.00 30.53 C
ATOM 7 C4' A B 54 -0.748 12.463 18.349 1.00 35.75 C
ATOM 8 O4' A B 54 -1.643 11.409 18.802 1.00 35.18 O
ATOM 9 C3' A B 54 -1.638 13.540 17.720 1.00 37.74 C
ATOM 10 O3' A B 54 -1.701 13.335 16.313 1.00 40.20 O
ATOM 11 C2' A B 54 -3.001 13.248 18.341 1.00 37.11 C
ATOM 12 O2' A B 54 -4.106 13.704 17.587 1.00 35.76 O
ATOM 13 C1' A B 54 -2.965 11.730 18.427 1.00 37.02 C
ATOM 14 N9 A B 54 -3.885 11.168 19.417 1.00 35.16 N
ATOM 15 C8 A B 54 -4.074 11.595 20.704 1.00 33.58 C
ATOM 16 N7 A B 54 -4.985 10.914 21.349 1.00 34.19 N
ATOM 17 C5 A B 54 -5.434 9.986 20.420 1.00 31.04 C
ATOM 18 C6 A B 54 -6.403 8.971 20.493 1.00 29.46 C
ATOM 19 N6 A B 54 -7.118 8.720 21.592 1.00 29.61 N
ATOM 20 N1 A B 54 -6.612 8.217 19.390 1.00 26.38 N
ATOM 21 C2 A B 54 -5.888 8.476 18.292 1.00 28.28 C
ATOM 22 N3 A B 54 -4.949 9.402 18.102 1.00 29.09 N
ATOM 23 C4 A B 54 -4.769 10.133 19.218 1.00 30.99 C
ATOM 24 P A B 55 -0.711 14.136 15.340 1.00 43.95 P
ATOM 25 OP1 A B 55 0.272 13.154 14.811 1.00 34.97 O
ATOM 26 OP2 A B 55 -0.212 15.305 16.097 1.00 38.25 O
ATOM 27 O5' A B 55 -1.678 14.625 14.170 1.00 38.62 O
TER
ATOM 2 P A A 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 3 OP1 A A 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 4 OP2 A A 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 5 O5' A A 21 -12.428 13.434 22.080 1.00 45.12 O
ATOM 6 C5' A A 21 -13.274 12.288 22.083 1.00 38.16 C
ATOM 7 C4' A A 21 -12.480 11.004 22.118 1.00 32.73 C
ATOM 8 O4' A A 21 -11.736 10.859 20.873 1.00 30.90 O
ATOM 9 C3' A A 21 -11.448 10.898 23.244 1.00 31.97 C
ATOM 10 O3' A A 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 11 C2' A A 21 -10.150 11.266 22.529 1.00 31.77 C
ATOM 12 O2' A A 21 -8.977 10.788 23.151 1.00 34.75 O
ATOM 13 C1' A A 21 -10.380 10.611 21.175 1.00 30.07 C
ATOM 14 N9 A A 21 -9.541 11.135 20.093 1.00 32.57 N
ATOM 15 C8 A A 21 -8.828 12.308 20.030 1.00 31.56 C
ATOM 16 N7 A A 21 -8.150 12.454 18.914 1.00 31.30 N
ATOM 17 C5 A A 21 -8.422 11.294 18.198 1.00 30.65 C
ATOM 18 C6 A A 21 -8.010 10.826 16.933 1.00 27.64 C
ATOM 19 N6 A A 21 -7.195 11.492 16.113 1.00 30.60 N
ATOM 20 N1 A A 21 -8.472 9.627 16.522 1.00 24.46 N
ATOM 21 C2 A A 21 -9.288 8.946 17.332 1.00 26.49 C
ATOM 22 N3 A A 21 -9.744 9.275 18.538 1.00 29.11 N
ATOM 23 C4 A A 21 -9.269 10.472 18.919 1.00 30.53 C
ATOM 24 P A A 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 25 OP1 A A 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 26 OP2 A A 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 27 O5' A A 22 -11.448 7.683 25.347 1.00 33.18 O
TER
ATOM 1 O3' G B 53 1.056 13.463 22.100 1.00 35.88 O
ATOM 2 P A B 54 0.234 14.676 21.444 1.00 40.45 P
ATOM 3 OP1 A B 54 1.232 15.644 20.921 1.00 45.22 O
ATOM 4 OP2 A B 54 -0.750 15.140 22.452 1.00 31.08 O
ATOM 5 O5' A B 54 -0.522 13.964 20.238 1.00 34.39 O
ATOM 6 C5' A B 54 0.106 12.923 19.500 1.00 30.53 C
ATOM 7 C4' A B 54 -0.748 12.463 18.349 1.00 35.75 C
ATOM 8 O4' A B 54 -1.643 11.409 18.802 1.00 35.18 O
ATOM 9 C3' A B 54 -1.638 13.540 17.720 1.00 37.74 C
ATOM 10 O3' A B 54 -1.701 13.335 16.313 1.00 40.20 O
ATOM 11 C2' A B 54 -3.001 13.248 18.341 1.00 37.11 C
ATOM 12 O2' A B 54 -4.106 13.704 17.587 1.00 35.76 O
ATOM 13 C1' A B 54 -2.965 11.730 18.427 1.00 37.02 C
ATOM 14 N9 A B 54 -3.885 11.168 19.417 1.00 35.16 N
ATOM 15 C8 A B 54 -4.074 11.595 20.704 1.00 33.58 C
ATOM 16 N7 A B 54 -4.985 10.914 21.349 1.00 34.19 N
ATOM 17 C5 A B 54 -5.434 9.986 20.420 1.00 31.04 C
ATOM 18 C6 A B 54 -6.403 8.971 20.493 1.00 29.46 C
ATOM 19 N6 A B 54 -7.118 8.720 21.592 1.00 29.61 N
ATOM 20 N1 A B 54 -6.612 8.217 19.390 1.00 26.38 N
ATOM 21 C2 A B 54 -5.888 8.476 18.292 1.00 28.28 C
ATOM 22 N3 A B 54 -4.949 9.402 18.102 1.00 29.09 N
ATOM 23 C4 A B 54 -4.769 10.133 19.218 1.00 30.99 C
ATOM 24 P A B 55 -0.711 14.136 15.340 1.00 43.95 P
ATOM 25 OP1 A B 55 0.272 13.154 14.811 1.00 34.97 O
ATOM 26 OP2 A B 55 -0.212 15.305 16.097 1.00 38.25 O
ATOM 27 O5' A B 55 -1.678 14.625 14.170 1.00 38.62 O
TER
Atoms:
OP1: (-13.340,14.632,24.102)
OP2: (-11.959,15.895,22.363)
C3': (-11.448,10.898,23.244)
C1': (-10.380,10.611,21.175)
C5': (-13.274,12.288,22.083)
O4': (-11.736,10.859,20.873)
C8: (-8.828,12.308,20.030)
O2': (-8.977,10.788,23.151)
C6: (-8.010,10.826,16.933)
C5: (-8.422,11.294,18.198)
C4: (-9.269,10.472,18.919)
P: (-12.930,14.819,22.687)
C4': (-12.480,11.004,22.118)
C2': (-10.150,11.266,22.529)
C2: (-9.288,8.946,17.332)
N1: (-8.472,9.627,16.522)
N3: (-9.744,9.275,18.538)
N6: (-7.195,11.492,16.113)
N7: (-8.150,12.454,18.914)
N9: (-9.541,11.135,20.093)
O5': (-12.428,13.434,22.080)
O3': (-11.376,9.541,23.678)
OP2: (-11.959,15.895,22.363)
C3': (-11.448,10.898,23.244)
C1': (-10.380,10.611,21.175)
C5': (-13.274,12.288,22.083)
O4': (-11.736,10.859,20.873)
C8: (-8.828,12.308,20.030)
O2': (-8.977,10.788,23.151)
C6: (-8.010,10.826,16.933)
C5: (-8.422,11.294,18.198)
C4: (-9.269,10.472,18.919)
P: (-12.930,14.819,22.687)
C4': (-12.480,11.004,22.118)
C2': (-10.150,11.266,22.529)
C2: (-9.288,8.946,17.332)
N1: (-8.472,9.627,16.522)
N3: (-9.744,9.275,18.538)
N6: (-7.195,11.492,16.113)
N7: (-8.150,12.454,18.914)
N9: (-9.541,11.135,20.093)
O5': (-12.428,13.434,22.080)
O3': (-11.376,9.541,23.678)
OP1: (1.232,15.644,20.921)
OP2: (-0.750,15.140,22.452)
C3': (-1.638,13.540,17.720)
C1': (-2.965,11.730,18.427)
C5': (0.106,12.923,19.500)
O4': (-1.643,11.409,18.802)
C8: (-4.074,11.595,20.704)
O2': (-4.106,13.704,17.587)
C6: (-6.403,8.971,20.493)
C5: (-5.434,9.986,20.420)
C4: (-4.769,10.133,19.218)
P: (0.234,14.676,21.444)
C4': (-0.748,12.463,18.349)
C2': (-3.001,13.248,18.341)
C2: (-5.888,8.476,18.292)
N1: (-6.612,8.217,19.390)
N3: (-4.949,9.402,18.102)
N6: (-7.118,8.720,21.592)
N7: (-4.985,10.914,21.349)
N9: (-3.885,11.168,19.417)
O5': (-0.522,13.964,20.238)
O3': (-1.701,13.335,16.313)
OP2: (-0.750,15.140,22.452)
C3': (-1.638,13.540,17.720)
C1': (-2.965,11.730,18.427)
C5': (0.106,12.923,19.500)
O4': (-1.643,11.409,18.802)
C8: (-4.074,11.595,20.704)
O2': (-4.106,13.704,17.587)
C6: (-6.403,8.971,20.493)
C5: (-5.434,9.986,20.420)
C4: (-4.769,10.133,19.218)
P: (0.234,14.676,21.444)
C4': (-0.748,12.463,18.349)
C2': (-3.001,13.248,18.341)
C2: (-5.888,8.476,18.292)
N1: (-6.612,8.217,19.390)
N3: (-4.949,9.402,18.102)
N6: (-7.118,8.720,21.592)
N7: (-4.985,10.914,21.349)
N9: (-3.885,11.168,19.417)
O5': (-0.522,13.964,20.238)
O3': (-1.701,13.335,16.313)
Image (generated by PyMOL):