ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1K9M:A235:A250

Extra

PDB:
ATOM 1 O3' G A 234 94.253 117.791 -7.361 1.00 68.30 O
ATOM 2 P A A 235 94.849 118.799 -8.464 1.00 69.91 P
ATOM 3 OP1 A A 235 94.445 118.264 -9.796 1.00 70.86 O
ATOM 4 OP2 A A 235 96.288 119.055 -8.182 1.00 69.36 O
ATOM 5 O5' A A 235 94.071 120.166 -8.232 1.00 68.36 O
ATOM 6 C5' A A 235 92.672 120.293 -8.518 1.00 65.00 C
ATOM 7 C4' A A 235 92.113 121.447 -7.736 1.00 63.47 C
ATOM 8 O4' A A 235 92.096 121.104 -6.319 1.00 62.86 O
ATOM 9 C3' A A 235 92.960 122.706 -7.843 1.00 63.32 C
ATOM 10 O3' A A 235 92.104 123.826 -7.733 1.00 64.79 O
ATOM 11 C2' A A 235 93.845 122.606 -6.606 1.00 62.65 C
ATOM 12 O2' A A 235 94.386 123.832 -6.171 1.00 61.49 O
ATOM 13 C1' A A 235 92.853 122.050 -5.593 1.00 62.65 C
ATOM 14 N9 A A 235 93.442 121.401 -4.415 1.00 62.98 N
ATOM 15 C8 A A 235 94.179 120.233 -4.349 1.00 63.34 C
ATOM 16 N7 A A 235 94.555 119.912 -3.137 1.00 62.88 N
ATOM 17 C5 A A 235 94.038 120.931 -2.348 1.00 62.56 C
ATOM 18 C6 A A 235 94.093 121.173 -0.966 1.00 62.38 C
ATOM 19 N6 A A 235 94.717 120.375 -0.097 1.00 61.95 N
ATOM 20 N1 A A 235 93.478 122.284 -0.496 1.00 62.29 N
ATOM 21 C2 A A 235 92.854 123.087 -1.363 1.00 62.05 C
ATOM 22 N3 A A 235 92.731 122.968 -2.682 1.00 61.90 N
ATOM 23 C4 A A 235 93.353 121.857 -3.120 1.00 62.43 C
ATOM 24 P A A 236 91.541 124.519 -9.062 1.00 66.17 P
ATOM 25 OP1 A A 236 92.569 124.315 -10.132 1.00 66.21 O
ATOM 26 OP2 A A 236 91.120 125.888 -8.682 1.00 66.36 O
ATOM 27 O5' A A 236 90.250 123.670 -9.457 1.00 65.21 O
TER

ATOM 1 O3' A B 249 95.642 123.196 4.280 1.00 59.72 O
ATOM 2 P A B 250 97.219 123.190 4.611 1.00 58.00 P
ATOM 3 OP1 A B 250 97.440 123.123 6.081 1.00 60.06 O
ATOM 4 OP2 A B 250 97.865 124.270 3.847 1.00 58.50 O
ATOM 5 O5' A B 250 97.728 121.809 4.005 1.00 57.97 O
ATOM 6 C5' A B 250 97.404 121.432 2.654 1.00 57.00 C
ATOM 7 C4' A B 250 98.171 120.190 2.263 1.00 55.78 C
ATOM 8 O4' A B 250 97.744 119.754 0.947 1.00 55.96 O
ATOM 9 C3' A B 250 99.678 120.361 2.160 1.00 57.24 C
ATOM 10 O3' A B 250 100.270 119.084 2.426 1.00 57.98 O
ATOM 11 C2' A B 250 99.853 120.734 0.686 1.00 57.23 C
ATOM 12 O2' A B 250 101.173 120.539 0.196 1.00 57.99 O
ATOM 13 C1' A B 250 98.839 119.782 0.052 1.00 57.16 C
ATOM 14 N9 A B 250 98.331 120.127 -1.275 1.00 57.46 N
ATOM 15 C8 A B 250 98.396 119.380 -2.432 1.00 57.93 C
ATOM 16 N7 A B 250 97.823 119.954 -3.462 1.00 58.71 N
ATOM 17 C5 A B 250 97.362 121.161 -2.953 1.00 58.74 C
ATOM 18 C6 A B 250 96.682 122.241 -3.546 1.00 59.72 C
ATOM 19 N6 A B 250 96.360 122.297 -4.841 1.00 59.41 N
ATOM 20 N1 A B 250 96.349 123.285 -2.756 1.00 59.69 N
ATOM 21 C2 A B 250 96.702 123.248 -1.467 1.00 59.43 C
ATOM 22 N3 A B 250 97.361 122.302 -0.798 1.00 58.80 N
ATOM 23 C4 A B 250 97.664 121.276 -1.608 1.00 57.86 C
ATOM 24 P U B 251 101.379 118.936 3.573 1.00 59.53 P
ATOM 25 OP1 U B 251 102.150 120.210 3.561 1.00 60.30 O
ATOM 26 OP2 U B 251 102.093 117.638 3.412 1.00 59.63 O
ATOM 27 O5' U B 251 100.520 118.856 4.907 1.00 60.88 O
TER

Atoms:
OP1: (94.445,118.264,-9.796)
OP2: (96.288,119.055,-8.182)
C3': (92.960,122.706,-7.843)
C1': (92.853,122.050,-5.593)
C5': (92.672,120.293,-8.518)
O4': (92.096,121.104,-6.319)
C8: (94.179,120.233,-4.349)
O2': (94.386,123.832,-6.171)
C6: (94.093,121.173,-0.966)
C5: (94.038,120.931,-2.348)
C4: (93.353,121.857,-3.120)
P: (94.849,118.799,-8.464)
C4': (92.113,121.447,-7.736)
C2': (93.845,122.606,-6.606)
C2: (92.854,123.087,-1.363)
N1: (93.478,122.284,-0.496)
N3: (92.731,122.968,-2.682)
N6: (94.717,120.375,-0.097)
N7: (94.555,119.912,-3.137)
N9: (93.442,121.401,-4.415)
O5': (94.071,120.166,-8.232)
O3': (92.104,123.826,-7.733)
OP1: (97.440,123.123,6.081)
OP2: (97.865,124.270,3.847)
C3': (99.678,120.361,2.160)
C1': (98.839,119.782,0.052)
C5': (97.404,121.432,2.654)
O4': (97.744,119.754,0.947)
C8: (98.396,119.380,-2.432)
O2': (101.173,120.539,0.196)
C6: (96.682,122.241,-3.546)
C5: (97.362,121.161,-2.953)
C4: (97.664,121.276,-1.608)
P: (97.219,123.190,4.611)
C4': (98.171,120.190,2.263)
C2': (99.853,120.734,0.686)
C2: (96.702,123.248,-1.467)
N1: (96.349,123.285,-2.756)
N3: (97.361,122.302,-0.798)
N6: (96.360,122.297,-4.841)
N7: (97.823,119.954,-3.462)
N9: (98.331,120.127,-1.275)
O5': (97.728,121.809,4.005)
O3': (100.270,119.084,2.426)
Image (generated by PyMOL):
PyMOL image
show in jmol