ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQN:0235:0250

Extra

PDB:
ATOM 1 O3' G A 234 93.624 117.435 -8.196 1.00 66.90 O
ATOM 2 P A A 235 94.082 118.436 -9.366 1.00 66.59 P
ATOM 3 OP1 A A 235 93.585 117.878 -10.653 1.00 68.01 O
ATOM 4 OP2 A A 235 95.534 118.691 -9.193 1.00 64.46 O
ATOM 5 O5' A A 235 93.276 119.773 -9.066 1.00 66.13 O
ATOM 6 C5' A A 235 91.873 119.887 -9.386 1.00 62.89 C
ATOM 7 C4' A A 235 91.276 121.051 -8.635 1.00 63.23 C
ATOM 8 O4' A A 235 91.158 120.705 -7.221 1.00 61.97 O
ATOM 9 C3' A A 235 92.119 122.325 -8.684 1.00 62.46 C
ATOM 10 O3' A A 235 91.275 123.473 -8.618 1.00 63.06 O
ATOM 11 C2' A A 235 92.935 122.211 -7.401 1.00 61.26 C
ATOM 12 O2' A A 235 93.472 123.424 -6.914 1.00 60.86 O
ATOM 13 C1' A A 235 91.885 121.643 -6.452 1.00 61.40 C
ATOM 14 N9 A A 235 92.446 120.980 -5.278 1.00 59.93 N
ATOM 15 C8 A A 235 93.130 119.792 -5.201 1.00 59.87 C
ATOM 16 N7 A A 235 93.543 119.500 -3.994 1.00 57.71 N
ATOM 17 C5 A A 235 93.088 120.561 -3.222 1.00 57.68 C
ATOM 18 C6 A A 235 93.205 120.853 -1.854 1.00 55.65 C
ATOM 19 N6 A A 235 93.848 120.068 -0.987 1.00 54.25 N
ATOM 20 N1 A A 235 92.635 121.990 -1.402 1.00 54.62 N
ATOM 21 C2 A A 235 91.995 122.775 -2.272 1.00 55.48 C
ATOM 22 N3 A A 235 91.820 122.612 -3.580 1.00 58.16 N
ATOM 23 C4 A A 235 92.401 121.472 -3.998 1.00 58.05 C
ATOM 24 P A A 236 90.753 124.152 -9.976 1.00 63.38 P
ATOM 25 OP1 A A 236 91.830 123.989 -10.989 1.00 65.32 O
ATOM 26 OP2 A A 236 90.250 125.510 -9.652 1.00 63.65 O
ATOM 27 O5' A A 236 89.512 123.248 -10.408 1.00 60.74 O
TER

ATOM 1 O3' A B 249 95.003 122.876 3.281 1.00 52.24 O
ATOM 2 P A B 250 96.564 122.920 3.673 1.00 55.27 P
ATOM 3 OP1 A B 250 96.687 122.781 5.137 1.00 58.26 O
ATOM 4 OP2 A B 250 97.202 124.084 3.001 1.00 58.87 O
ATOM 5 O5' A B 250 97.161 121.590 3.034 1.00 55.24 O
ATOM 6 C5' A B 250 96.780 121.166 1.713 1.00 52.97 C
ATOM 7 C4' A B 250 97.510 119.894 1.343 1.00 52.64 C
ATOM 8 O4' A B 250 97.046 119.449 0.042 1.00 53.80 O
ATOM 9 C3' A B 250 99.028 120.001 1.229 1.00 51.51 C
ATOM 10 O3' A B 250 99.592 118.722 1.513 1.00 50.25 O
ATOM 11 C2' A B 250 99.214 120.307 -0.255 1.00 53.64 C
ATOM 12 O2' A B 250 100.485 119.926 -0.744 1.00 55.41 O
ATOM 13 C1' A B 250 98.128 119.426 -0.868 1.00 54.86 C
ATOM 14 N9 A B 250 97.635 119.854 -2.178 1.00 57.07 N
ATOM 15 C8 A B 250 97.773 119.184 -3.368 1.00 57.40 C
ATOM 16 N7 A B 250 97.199 119.785 -4.382 1.00 58.36 N
ATOM 17 C5 A B 250 96.651 120.932 -3.825 1.00 57.83 C
ATOM 18 C6 A B 250 95.906 121.991 -4.377 1.00 57.76 C
ATOM 19 N6 A B 250 95.559 122.066 -5.663 1.00 57.84 N
ATOM 20 N1 A B 250 95.517 122.982 -3.549 1.00 58.29 N
ATOM 21 C2 A B 250 95.853 122.906 -2.258 1.00 58.87 C
ATOM 22 N3 A B 250 96.546 121.962 -1.619 1.00 59.21 N
ATOM 23 C4 A B 250 96.919 120.992 -2.470 1.00 57.91 C
ATOM 24 P U B 251 100.708 118.561 2.658 1.00 50.88 P
ATOM 25 OP1 U B 251 101.521 119.805 2.764 1.00 51.04 O
ATOM 26 OP2 U B 251 101.390 117.254 2.440 1.00 47.74 O
ATOM 27 O5' U B 251 99.851 118.451 3.992 1.00 51.52 O
TER

Atoms:
OP1: (93.585,117.878,-10.653)
OP2: (95.534,118.691,-9.193)
C3': (92.119,122.325,-8.684)
C1': (91.885,121.643,-6.452)
C5': (91.873,119.887,-9.386)
O4': (91.158,120.705,-7.221)
C8: (93.130,119.792,-5.201)
O2': (93.472,123.424,-6.914)
C6: (93.205,120.853,-1.854)
C5: (93.088,120.561,-3.222)
C4: (92.401,121.472,-3.998)
P: (94.082,118.436,-9.366)
C4': (91.276,121.051,-8.635)
C2': (92.935,122.211,-7.401)
C2: (91.995,122.775,-2.272)
N1: (92.635,121.990,-1.402)
N3: (91.820,122.612,-3.580)
N6: (93.848,120.068,-0.987)
N7: (93.543,119.500,-3.994)
N9: (92.446,120.980,-5.278)
O5': (93.276,119.773,-9.066)
O3': (91.275,123.473,-8.618)
OP1: (96.687,122.781,5.137)
OP2: (97.202,124.084,3.001)
C3': (99.028,120.001,1.229)
C1': (98.128,119.426,-0.868)
C5': (96.780,121.166,1.713)
O4': (97.046,119.449,0.042)
C8: (97.773,119.184,-3.368)
O2': (100.485,119.926,-0.744)
C6: (95.906,121.991,-4.377)
C5: (96.651,120.932,-3.825)
C4: (96.919,120.992,-2.470)
P: (96.564,122.920,3.673)
C4': (97.510,119.894,1.343)
C2': (99.214,120.307,-0.255)
C2: (95.853,122.906,-2.258)
N1: (95.517,122.982,-3.549)
N3: (96.546,121.962,-1.619)
N6: (95.559,122.066,-5.663)
N7: (97.199,119.785,-4.382)
N9: (97.635,119.854,-2.178)
O5': (97.161,121.590,3.034)
O3': (99.592,118.722,1.513)
Image (generated by PyMOL):
PyMOL image
show in jmol