Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12430:12431
Extra
PDB:
ATOM 1 O3' G A2429 -18.735 -56.860 31.665 1.00 84.21 O
ATOM 2 P A A2430 -17.925 -56.279 30.428 1.00 87.37 P
ATOM 3 OP1 A A2430 -18.459 -54.916 30.167 1.00 87.21 O
ATOM 4 OP2 A A2430 -17.976 -57.305 29.345 1.00 88.00 O
ATOM 5 O5' A A2430 -16.445 -56.186 31.015 1.00 86.76 O
ATOM 6 C5' A A2430 -15.315 -56.035 30.160 1.00 86.65 C
ATOM 7 C4' A A2430 -14.117 -55.557 30.929 1.00 85.97 C
ATOM 8 O4' A A2430 -14.465 -54.364 31.662 1.00 85.53 O
ATOM 9 C3' A A2430 -13.600 -56.506 31.981 1.00 85.82 C
ATOM 10 O3' A A2430 -12.735 -57.478 31.432 1.00 86.03 O
ATOM 11 C2' A A2430 -12.919 -55.582 32.977 1.00 85.11 C
ATOM 12 O2' A A2430 -11.626 -55.255 32.518 1.00 84.80 O
ATOM 13 C1' A A2430 -13.777 -54.325 32.883 1.00 85.01 C
ATOM 14 N9 A A2430 -14.759 -54.194 33.983 1.00 84.95 N
ATOM 15 C8 A A2430 -16.125 -54.254 33.904 1.00 85.36 C
ATOM 16 N7 A A2430 -16.756 -54.059 35.047 1.00 85.19 N
ATOM 17 C5 A A2430 -15.740 -53.833 35.967 1.00 84.62 C
ATOM 18 C6 A A2430 -15.719 -53.562 37.366 1.00 84.20 C
ATOM 19 N6 A A2430 -16.760 -53.446 38.203 1.00 84.26 N
ATOM 20 N1 A A2430 -14.524 -53.405 37.945 1.00 83.70 N
ATOM 21 C2 A A2430 -13.439 -53.506 37.178 1.00 83.62 C
ATOM 22 N3 A A2430 -13.328 -53.750 35.875 1.00 83.97 N
ATOM 23 C4 A A2430 -14.522 -53.906 35.307 1.00 84.47 C
ATOM 24 P A A2431 -12.978 -59.028 31.734 1.00 79.13 P
ATOM 25 OP1 A A2431 -12.018 -59.795 30.902 1.00 79.35 O
ATOM 26 OP2 A A2431 -14.436 -59.279 31.573 1.00 79.64 O
ATOM 27 O5' A A2431 -12.576 -59.141 33.264 1.00 78.65 O
TER
ATOM 1 O3' A B2430 -12.735 -57.478 31.432 1.00 86.03 O
ATOM 2 P A B2431 -12.978 -59.028 31.734 1.00 79.13 P
ATOM 3 OP1 A B2431 -12.018 -59.795 30.902 1.00 79.35 O
ATOM 4 OP2 A B2431 -14.436 -59.279 31.573 1.00 79.64 O
ATOM 5 O5' A B2431 -12.576 -59.141 33.264 1.00 78.65 O
ATOM 6 C5' A B2431 -11.255 -58.866 33.678 1.00 78.12 C
ATOM 7 C4' A B2431 -11.155 -58.708 35.164 1.00 77.67 C
ATOM 8 O4' A B2431 -11.944 -57.609 35.626 1.00 77.43 O
ATOM 9 C3' A B2431 -11.657 -59.836 36.017 1.00 77.94 C
ATOM 10 O3' A B2431 -10.803 -60.934 35.996 1.00 78.08 O
ATOM 11 C2' A B2431 -11.744 -59.177 37.389 1.00 77.43 C
ATOM 12 O2' A B2431 -10.506 -59.245 38.084 1.00 76.98 O
ATOM 13 C1' A B2431 -11.997 -57.716 37.026 1.00 77.14 C
ATOM 14 N9 A B2431 -13.280 -57.244 37.553 1.00 77.20 N
ATOM 15 C8 A B2431 -13.423 -56.845 38.868 1.00 76.82 C
ATOM 16 N7 A B2431 -14.632 -56.509 39.230 1.00 76.95 N
ATOM 17 C5 A B2431 -15.305 -56.731 38.068 1.00 77.46 C
ATOM 18 C6 A B2431 -16.647 -56.533 37.857 1.00 77.82 C
ATOM 19 N6 A B2431 -17.442 -56.090 38.841 1.00 77.68 N
ATOM 20 N1 A B2431 -17.067 -56.816 36.605 1.00 78.31 N
ATOM 21 C2 A B2431 -16.114 -57.263 35.729 1.00 78.40 C
ATOM 22 N3 A B2431 -14.806 -57.496 35.798 1.00 78.10 N
ATOM 23 C4 A B2431 -14.505 -57.203 37.034 1.00 77.63 C
ATOM 24 P A B2432 -11.391 -62.413 36.004 1.00 78.67 P
ATOM 25 OP1 A B2432 -10.240 -63.336 35.858 1.00 78.73 O
ATOM 26 OP2 A B2432 -12.473 -62.458 34.979 1.00 79.21 O
ATOM 27 O5' A B2432 -12.018 -62.546 37.474 1.00 78.52 O
TER
ATOM 2 P A A2430 -17.925 -56.279 30.428 1.00 87.37 P
ATOM 3 OP1 A A2430 -18.459 -54.916 30.167 1.00 87.21 O
ATOM 4 OP2 A A2430 -17.976 -57.305 29.345 1.00 88.00 O
ATOM 5 O5' A A2430 -16.445 -56.186 31.015 1.00 86.76 O
ATOM 6 C5' A A2430 -15.315 -56.035 30.160 1.00 86.65 C
ATOM 7 C4' A A2430 -14.117 -55.557 30.929 1.00 85.97 C
ATOM 8 O4' A A2430 -14.465 -54.364 31.662 1.00 85.53 O
ATOM 9 C3' A A2430 -13.600 -56.506 31.981 1.00 85.82 C
ATOM 10 O3' A A2430 -12.735 -57.478 31.432 1.00 86.03 O
ATOM 11 C2' A A2430 -12.919 -55.582 32.977 1.00 85.11 C
ATOM 12 O2' A A2430 -11.626 -55.255 32.518 1.00 84.80 O
ATOM 13 C1' A A2430 -13.777 -54.325 32.883 1.00 85.01 C
ATOM 14 N9 A A2430 -14.759 -54.194 33.983 1.00 84.95 N
ATOM 15 C8 A A2430 -16.125 -54.254 33.904 1.00 85.36 C
ATOM 16 N7 A A2430 -16.756 -54.059 35.047 1.00 85.19 N
ATOM 17 C5 A A2430 -15.740 -53.833 35.967 1.00 84.62 C
ATOM 18 C6 A A2430 -15.719 -53.562 37.366 1.00 84.20 C
ATOM 19 N6 A A2430 -16.760 -53.446 38.203 1.00 84.26 N
ATOM 20 N1 A A2430 -14.524 -53.405 37.945 1.00 83.70 N
ATOM 21 C2 A A2430 -13.439 -53.506 37.178 1.00 83.62 C
ATOM 22 N3 A A2430 -13.328 -53.750 35.875 1.00 83.97 N
ATOM 23 C4 A A2430 -14.522 -53.906 35.307 1.00 84.47 C
ATOM 24 P A A2431 -12.978 -59.028 31.734 1.00 79.13 P
ATOM 25 OP1 A A2431 -12.018 -59.795 30.902 1.00 79.35 O
ATOM 26 OP2 A A2431 -14.436 -59.279 31.573 1.00 79.64 O
ATOM 27 O5' A A2431 -12.576 -59.141 33.264 1.00 78.65 O
TER
ATOM 1 O3' A B2430 -12.735 -57.478 31.432 1.00 86.03 O
ATOM 2 P A B2431 -12.978 -59.028 31.734 1.00 79.13 P
ATOM 3 OP1 A B2431 -12.018 -59.795 30.902 1.00 79.35 O
ATOM 4 OP2 A B2431 -14.436 -59.279 31.573 1.00 79.64 O
ATOM 5 O5' A B2431 -12.576 -59.141 33.264 1.00 78.65 O
ATOM 6 C5' A B2431 -11.255 -58.866 33.678 1.00 78.12 C
ATOM 7 C4' A B2431 -11.155 -58.708 35.164 1.00 77.67 C
ATOM 8 O4' A B2431 -11.944 -57.609 35.626 1.00 77.43 O
ATOM 9 C3' A B2431 -11.657 -59.836 36.017 1.00 77.94 C
ATOM 10 O3' A B2431 -10.803 -60.934 35.996 1.00 78.08 O
ATOM 11 C2' A B2431 -11.744 -59.177 37.389 1.00 77.43 C
ATOM 12 O2' A B2431 -10.506 -59.245 38.084 1.00 76.98 O
ATOM 13 C1' A B2431 -11.997 -57.716 37.026 1.00 77.14 C
ATOM 14 N9 A B2431 -13.280 -57.244 37.553 1.00 77.20 N
ATOM 15 C8 A B2431 -13.423 -56.845 38.868 1.00 76.82 C
ATOM 16 N7 A B2431 -14.632 -56.509 39.230 1.00 76.95 N
ATOM 17 C5 A B2431 -15.305 -56.731 38.068 1.00 77.46 C
ATOM 18 C6 A B2431 -16.647 -56.533 37.857 1.00 77.82 C
ATOM 19 N6 A B2431 -17.442 -56.090 38.841 1.00 77.68 N
ATOM 20 N1 A B2431 -17.067 -56.816 36.605 1.00 78.31 N
ATOM 21 C2 A B2431 -16.114 -57.263 35.729 1.00 78.40 C
ATOM 22 N3 A B2431 -14.806 -57.496 35.798 1.00 78.10 N
ATOM 23 C4 A B2431 -14.505 -57.203 37.034 1.00 77.63 C
ATOM 24 P A B2432 -11.391 -62.413 36.004 1.00 78.67 P
ATOM 25 OP1 A B2432 -10.240 -63.336 35.858 1.00 78.73 O
ATOM 26 OP2 A B2432 -12.473 -62.458 34.979 1.00 79.21 O
ATOM 27 O5' A B2432 -12.018 -62.546 37.474 1.00 78.52 O
TER
Atoms:
OP1: (-18.459,-54.916,30.167)
OP2: (-17.976,-57.305,29.345)
C3': (-13.600,-56.506,31.981)
C1': (-13.777,-54.325,32.883)
C5': (-15.315,-56.035,30.160)
O4': (-14.465,-54.364,31.662)
C8: (-16.125,-54.254,33.904)
O2': (-11.626,-55.255,32.518)
C6: (-15.719,-53.562,37.366)
C5: (-15.740,-53.833,35.967)
C4: (-14.522,-53.906,35.307)
P: (-17.925,-56.279,30.428)
C4': (-14.117,-55.557,30.929)
C2': (-12.919,-55.582,32.977)
C2: (-13.439,-53.506,37.178)
N1: (-14.524,-53.405,37.945)
N3: (-13.328,-53.750,35.875)
N6: (-16.760,-53.446,38.203)
N7: (-16.756,-54.059,35.047)
N9: (-14.759,-54.194,33.983)
O5': (-16.445,-56.186,31.015)
O3': (-12.735,-57.478,31.432)
OP2: (-17.976,-57.305,29.345)
C3': (-13.600,-56.506,31.981)
C1': (-13.777,-54.325,32.883)
C5': (-15.315,-56.035,30.160)
O4': (-14.465,-54.364,31.662)
C8: (-16.125,-54.254,33.904)
O2': (-11.626,-55.255,32.518)
C6: (-15.719,-53.562,37.366)
C5: (-15.740,-53.833,35.967)
C4: (-14.522,-53.906,35.307)
P: (-17.925,-56.279,30.428)
C4': (-14.117,-55.557,30.929)
C2': (-12.919,-55.582,32.977)
C2: (-13.439,-53.506,37.178)
N1: (-14.524,-53.405,37.945)
N3: (-13.328,-53.750,35.875)
N6: (-16.760,-53.446,38.203)
N7: (-16.756,-54.059,35.047)
N9: (-14.759,-54.194,33.983)
O5': (-16.445,-56.186,31.015)
O3': (-12.735,-57.478,31.432)
OP1: (-12.018,-59.795,30.902)
OP2: (-14.436,-59.279,31.573)
C3': (-11.657,-59.836,36.017)
C1': (-11.997,-57.716,37.026)
C5': (-11.255,-58.866,33.678)
O4': (-11.944,-57.609,35.626)
C8: (-13.423,-56.845,38.868)
O2': (-10.506,-59.245,38.084)
C6: (-16.647,-56.533,37.857)
C5: (-15.305,-56.731,38.068)
C4: (-14.505,-57.203,37.034)
P: (-12.978,-59.028,31.734)
C4': (-11.155,-58.708,35.164)
C2': (-11.744,-59.177,37.389)
C2: (-16.114,-57.263,35.729)
N1: (-17.067,-56.816,36.605)
N3: (-14.806,-57.496,35.798)
N6: (-17.442,-56.090,38.841)
N7: (-14.632,-56.509,39.230)
N9: (-13.280,-57.244,37.553)
O5': (-12.576,-59.141,33.264)
O3': (-10.803,-60.934,35.996)
OP2: (-14.436,-59.279,31.573)
C3': (-11.657,-59.836,36.017)
C1': (-11.997,-57.716,37.026)
C5': (-11.255,-58.866,33.678)
O4': (-11.944,-57.609,35.626)
C8: (-13.423,-56.845,38.868)
O2': (-10.506,-59.245,38.084)
C6: (-16.647,-56.533,37.857)
C5: (-15.305,-56.731,38.068)
C4: (-14.505,-57.203,37.034)
P: (-12.978,-59.028,31.734)
C4': (-11.155,-58.708,35.164)
C2': (-11.744,-59.177,37.389)
C2: (-16.114,-57.263,35.729)
N1: (-17.067,-56.816,36.605)
N3: (-14.806,-57.496,35.798)
N6: (-17.442,-56.090,38.841)
N7: (-14.632,-56.509,39.230)
N9: (-13.280,-57.244,37.553)
O5': (-12.576,-59.141,33.264)
O3': (-10.803,-60.934,35.996)
Image (generated by PyMOL):