Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2RD2:B18:B42
Extra
PDB:
ATOM 1 O3' U A 17 5.468 28.641 31.509 1.00142.24 O
ATOM 2 P A A 18 5.388 27.207 30.789 1.00122.38 P
ATOM 3 OP1 A A 18 4.343 27.272 29.733 1.00 99.55 O
ATOM 4 OP2 A A 18 5.318 26.155 31.837 1.00100.59 O
ATOM 5 O5' A A 18 6.799 27.073 30.069 1.00122.78 O
ATOM 6 C5' A A 18 7.346 25.795 29.789 1.00119.30 C
ATOM 7 C4' A A 18 8.709 25.937 29.164 1.00113.73 C
ATOM 8 O4' A A 18 9.608 26.610 30.079 1.00110.84 O
ATOM 9 C3' A A 18 9.400 24.621 28.875 1.00109.38 C
ATOM 10 O3' A A 18 8.965 24.142 27.615 1.00108.36 O
ATOM 11 C2' A A 18 10.870 25.015 28.832 1.00111.24 C
ATOM 12 O2' A A 18 11.238 25.523 27.565 1.00115.54 O
ATOM 13 C1' A A 18 10.926 26.132 29.878 1.00108.63 C
ATOM 14 N9 A A 18 11.483 25.739 31.171 1.00 80.17 N
ATOM 15 C8 A A 18 10.833 25.185 32.244 1.00 82.15 C
ATOM 16 N7 A A 18 11.606 24.984 33.283 1.00 80.27 N
ATOM 17 C5 A A 18 12.852 25.428 32.864 1.00 78.43 C
ATOM 18 C6 A A 18 14.101 25.491 33.507 1.00 78.17 C
ATOM 19 N6 A A 18 14.308 25.102 34.765 1.00 81.87 N
ATOM 20 N1 A A 18 15.146 25.977 32.803 1.00 77.91 N
ATOM 21 C2 A A 18 14.938 26.373 31.542 1.00 76.19 C
ATOM 22 N3 A A 18 13.813 26.372 30.832 1.00 74.54 N
ATOM 23 C4 A A 18 12.794 25.882 31.560 1.00 77.64 C
ATOM 24 P A A 19 9.393 22.679 27.137 1.00103.20 P
ATOM 25 OP1 A A 19 8.209 22.027 26.520 1.00105.62 O
ATOM 26 OP2 A A 19 10.072 22.033 28.292 1.00108.79 O
ATOM 27 O5' A A 19 10.477 22.959 26.003 1.00100.26 O
TER
ATOM 1 O3' C B 41 12.179 15.711 35.120 1.00121.03 O
ATOM 2 P A B 42 11.300 17.038 34.886 1.00161.28 P
ATOM 3 OP1 A B 42 10.127 16.974 35.797 1.00103.25 O
ATOM 4 OP2 A B 42 11.086 17.188 33.423 1.00102.81 O
ATOM 5 O5' A B 42 12.255 18.217 35.375 1.00161.28 O
ATOM 6 C5' A B 42 13.218 17.996 36.403 1.00161.70 C
ATOM 7 C4' A B 42 13.953 19.277 36.726 1.00162.09 C
ATOM 8 O4' A B 42 14.696 19.722 35.566 1.00160.23 O
ATOM 9 C3' A B 42 13.089 20.467 37.112 1.00163.66 C
ATOM 10 O3' A B 42 12.799 20.377 38.506 1.00169.75 O
ATOM 11 C2' A B 42 13.984 21.659 36.773 1.00161.90 C
ATOM 12 O2' A B 42 14.884 21.979 37.815 1.00166.43 O
ATOM 13 C1' A B 42 14.775 21.136 35.566 1.00156.33 C
ATOM 14 N9 A B 42 14.347 21.619 34.252 1.00 86.96 N
ATOM 15 C8 A B 42 13.100 21.560 33.682 1.00 85.37 C
ATOM 16 N7 A B 42 13.054 22.041 32.462 1.00 82.56 N
ATOM 17 C5 A B 42 14.357 22.452 32.214 1.00 77.90 C
ATOM 18 C6 A B 42 14.971 23.042 31.088 1.00 75.97 C
ATOM 19 N6 A B 42 14.327 23.322 29.954 1.00 78.72 N
ATOM 20 N1 A B 42 16.288 23.336 31.172 1.00 71.21 N
ATOM 21 C2 A B 42 16.936 23.051 32.308 1.00 70.58 C
ATOM 22 N3 A B 42 16.473 22.493 33.428 1.00 73.21 N
ATOM 23 C4 A B 42 15.161 22.213 33.313 1.00 79.39 C
ATOM 24 P U B 43 12.164 21.631 39.285 1.00163.62 P
ATOM 25 OP1 U B 43 13.247 22.611 39.550 1.00143.65 O
ATOM 26 OP2 U B 43 11.386 21.080 40.422 1.00143.48 O
ATOM 27 O5' U B 43 11.131 22.267 38.251 1.00162.00 O
TER
ATOM 2 P A A 18 5.388 27.207 30.789 1.00122.38 P
ATOM 3 OP1 A A 18 4.343 27.272 29.733 1.00 99.55 O
ATOM 4 OP2 A A 18 5.318 26.155 31.837 1.00100.59 O
ATOM 5 O5' A A 18 6.799 27.073 30.069 1.00122.78 O
ATOM 6 C5' A A 18 7.346 25.795 29.789 1.00119.30 C
ATOM 7 C4' A A 18 8.709 25.937 29.164 1.00113.73 C
ATOM 8 O4' A A 18 9.608 26.610 30.079 1.00110.84 O
ATOM 9 C3' A A 18 9.400 24.621 28.875 1.00109.38 C
ATOM 10 O3' A A 18 8.965 24.142 27.615 1.00108.36 O
ATOM 11 C2' A A 18 10.870 25.015 28.832 1.00111.24 C
ATOM 12 O2' A A 18 11.238 25.523 27.565 1.00115.54 O
ATOM 13 C1' A A 18 10.926 26.132 29.878 1.00108.63 C
ATOM 14 N9 A A 18 11.483 25.739 31.171 1.00 80.17 N
ATOM 15 C8 A A 18 10.833 25.185 32.244 1.00 82.15 C
ATOM 16 N7 A A 18 11.606 24.984 33.283 1.00 80.27 N
ATOM 17 C5 A A 18 12.852 25.428 32.864 1.00 78.43 C
ATOM 18 C6 A A 18 14.101 25.491 33.507 1.00 78.17 C
ATOM 19 N6 A A 18 14.308 25.102 34.765 1.00 81.87 N
ATOM 20 N1 A A 18 15.146 25.977 32.803 1.00 77.91 N
ATOM 21 C2 A A 18 14.938 26.373 31.542 1.00 76.19 C
ATOM 22 N3 A A 18 13.813 26.372 30.832 1.00 74.54 N
ATOM 23 C4 A A 18 12.794 25.882 31.560 1.00 77.64 C
ATOM 24 P A A 19 9.393 22.679 27.137 1.00103.20 P
ATOM 25 OP1 A A 19 8.209 22.027 26.520 1.00105.62 O
ATOM 26 OP2 A A 19 10.072 22.033 28.292 1.00108.79 O
ATOM 27 O5' A A 19 10.477 22.959 26.003 1.00100.26 O
TER
ATOM 1 O3' C B 41 12.179 15.711 35.120 1.00121.03 O
ATOM 2 P A B 42 11.300 17.038 34.886 1.00161.28 P
ATOM 3 OP1 A B 42 10.127 16.974 35.797 1.00103.25 O
ATOM 4 OP2 A B 42 11.086 17.188 33.423 1.00102.81 O
ATOM 5 O5' A B 42 12.255 18.217 35.375 1.00161.28 O
ATOM 6 C5' A B 42 13.218 17.996 36.403 1.00161.70 C
ATOM 7 C4' A B 42 13.953 19.277 36.726 1.00162.09 C
ATOM 8 O4' A B 42 14.696 19.722 35.566 1.00160.23 O
ATOM 9 C3' A B 42 13.089 20.467 37.112 1.00163.66 C
ATOM 10 O3' A B 42 12.799 20.377 38.506 1.00169.75 O
ATOM 11 C2' A B 42 13.984 21.659 36.773 1.00161.90 C
ATOM 12 O2' A B 42 14.884 21.979 37.815 1.00166.43 O
ATOM 13 C1' A B 42 14.775 21.136 35.566 1.00156.33 C
ATOM 14 N9 A B 42 14.347 21.619 34.252 1.00 86.96 N
ATOM 15 C8 A B 42 13.100 21.560 33.682 1.00 85.37 C
ATOM 16 N7 A B 42 13.054 22.041 32.462 1.00 82.56 N
ATOM 17 C5 A B 42 14.357 22.452 32.214 1.00 77.90 C
ATOM 18 C6 A B 42 14.971 23.042 31.088 1.00 75.97 C
ATOM 19 N6 A B 42 14.327 23.322 29.954 1.00 78.72 N
ATOM 20 N1 A B 42 16.288 23.336 31.172 1.00 71.21 N
ATOM 21 C2 A B 42 16.936 23.051 32.308 1.00 70.58 C
ATOM 22 N3 A B 42 16.473 22.493 33.428 1.00 73.21 N
ATOM 23 C4 A B 42 15.161 22.213 33.313 1.00 79.39 C
ATOM 24 P U B 43 12.164 21.631 39.285 1.00163.62 P
ATOM 25 OP1 U B 43 13.247 22.611 39.550 1.00143.65 O
ATOM 26 OP2 U B 43 11.386 21.080 40.422 1.00143.48 O
ATOM 27 O5' U B 43 11.131 22.267 38.251 1.00162.00 O
TER
Atoms:
OP1: (4.343,27.272,29.733)
OP2: (5.318,26.155,31.837)
C3': (9.400,24.621,28.875)
C1': (10.926,26.132,29.878)
C5': (7.346,25.795,29.789)
O4': (9.608,26.610,30.079)
C8: (10.833,25.185,32.244)
O2': (11.238,25.523,27.565)
C6: (14.101,25.491,33.507)
C5: (12.852,25.428,32.864)
C4: (12.794,25.882,31.560)
P: (5.388,27.207,30.789)
C4': (8.709,25.937,29.164)
C2': (10.870,25.015,28.832)
C2: (14.938,26.373,31.542)
N1: (15.146,25.977,32.803)
N3: (13.813,26.372,30.832)
N6: (14.308,25.102,34.765)
N7: (11.606,24.984,33.283)
N9: (11.483,25.739,31.171)
O5': (6.799,27.073,30.069)
O3': (8.965,24.142,27.615)
OP2: (5.318,26.155,31.837)
C3': (9.400,24.621,28.875)
C1': (10.926,26.132,29.878)
C5': (7.346,25.795,29.789)
O4': (9.608,26.610,30.079)
C8: (10.833,25.185,32.244)
O2': (11.238,25.523,27.565)
C6: (14.101,25.491,33.507)
C5: (12.852,25.428,32.864)
C4: (12.794,25.882,31.560)
P: (5.388,27.207,30.789)
C4': (8.709,25.937,29.164)
C2': (10.870,25.015,28.832)
C2: (14.938,26.373,31.542)
N1: (15.146,25.977,32.803)
N3: (13.813,26.372,30.832)
N6: (14.308,25.102,34.765)
N7: (11.606,24.984,33.283)
N9: (11.483,25.739,31.171)
O5': (6.799,27.073,30.069)
O3': (8.965,24.142,27.615)
OP1: (10.127,16.974,35.797)
OP2: (11.086,17.188,33.423)
C3': (13.089,20.467,37.112)
C1': (14.775,21.136,35.566)
C5': (13.218,17.996,36.403)
O4': (14.696,19.722,35.566)
C8: (13.100,21.560,33.682)
O2': (14.884,21.979,37.815)
C6: (14.971,23.042,31.088)
C5: (14.357,22.452,32.214)
C4: (15.161,22.213,33.313)
P: (11.300,17.038,34.886)
C4': (13.953,19.277,36.726)
C2': (13.984,21.659,36.773)
C2: (16.936,23.051,32.308)
N1: (16.288,23.336,31.172)
N3: (16.473,22.493,33.428)
N6: (14.327,23.322,29.954)
N7: (13.054,22.041,32.462)
N9: (14.347,21.619,34.252)
O5': (12.255,18.217,35.375)
O3': (12.799,20.377,38.506)
OP2: (11.086,17.188,33.423)
C3': (13.089,20.467,37.112)
C1': (14.775,21.136,35.566)
C5': (13.218,17.996,36.403)
O4': (14.696,19.722,35.566)
C8: (13.100,21.560,33.682)
O2': (14.884,21.979,37.815)
C6: (14.971,23.042,31.088)
C5: (14.357,22.452,32.214)
C4: (15.161,22.213,33.313)
P: (11.300,17.038,34.886)
C4': (13.953,19.277,36.726)
C2': (13.984,21.659,36.773)
C2: (16.936,23.051,32.308)
N1: (16.288,23.336,31.172)
N3: (16.473,22.493,33.428)
N6: (14.327,23.322,29.954)
N7: (13.054,22.041,32.462)
N9: (14.347,21.619,34.252)
O5': (12.255,18.217,35.375)
O3': (12.799,20.377,38.506)
Image (generated by PyMOL):