ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3LWR:D24:D28

Extra

PDB:
ATOM 1 O3' G A 23 57.558 -13.872 36.085 1.00 38.81 O
ATOM 2 P A A 24 58.882 -14.439 35.392 1.00 47.54 P
ATOM 3 OP1 A A 24 59.794 -15.003 36.416 1.00 48.52 O
ATOM 4 OP2 A A 24 59.374 -13.507 34.358 1.00 49.13 O
ATOM 5 O5' A A 24 58.244 -15.710 34.658 1.00 57.34 O
ATOM 6 C5' A A 24 57.173 -16.417 35.276 1.00 51.16 C
ATOM 7 C4' A A 24 56.241 -17.041 34.265 1.00 51.78 C
ATOM 8 O4' A A 24 55.291 -16.054 33.778 1.00 47.75 O
ATOM 9 C3' A A 24 56.906 -17.634 33.023 1.00 66.41 C
ATOM 10 O3' A A 24 56.131 -18.762 32.607 1.00 74.33 O
ATOM 11 C2' A A 24 56.768 -16.497 32.009 1.00 53.00 C
ATOM 12 O2' A A 24 56.843 -16.891 30.655 1.00 51.00 O
ATOM 13 C1' A A 24 55.395 -15.930 32.372 1.00 46.54 C
ATOM 14 N9 A A 24 55.220 -14.511 32.047 1.00 40.37 N
ATOM 15 C8 A A 24 55.505 -13.464 32.871 1.00 42.12 C
ATOM 16 N7 A A 24 55.255 -12.289 32.346 1.00 52.66 N
ATOM 17 C5 A A 24 54.773 -12.581 31.086 1.00 45.74 C
ATOM 18 C6 A A 24 54.333 -11.754 30.035 1.00 39.46 C
ATOM 19 N6 A A 24 54.324 -10.415 30.123 1.00 42.19 N
ATOM 20 N1 A A 24 53.905 -12.353 28.900 1.00 29.18 N
ATOM 21 C2 A A 24 53.932 -13.692 28.841 1.00 40.68 C
ATOM 22 N3 A A 24 54.328 -14.575 29.765 1.00 41.76 N
ATOM 23 C4 A A 24 54.741 -13.950 30.881 1.00 45.30 C
ATOM 24 P U A 25 56.724 -20.191 32.186 1.00 78.21 P
ATOM 25 OP1 U A 25 56.280 -21.177 33.198 1.00 79.06 O
ATOM 26 OP2 U A 25 58.158 -20.103 31.814 1.00 68.18 O
ATOM 27 O5' U A 25 55.787 -20.481 30.917 1.00121.15 O
TER

ATOM 1 O3' A B 27 53.785 -9.290 25.119 1.00 43.87 O
ATOM 2 P A B 28 54.888 -8.201 24.711 1.00 41.57 P
ATOM 3 OP1 A B 28 54.282 -7.245 23.758 1.00 37.66 O
ATOM 4 OP2 A B 28 56.178 -8.867 24.439 1.00 39.64 O
ATOM 5 O5' A B 28 55.050 -7.369 26.065 1.00 35.03 O
ATOM 6 C5' A B 28 55.483 -8.073 27.223 1.00 33.89 C
ATOM 7 C4' A B 28 56.070 -7.151 28.261 1.00 34.19 C
ATOM 8 O4' A B 28 56.306 -7.903 29.482 1.00 33.37 O
ATOM 9 C3' A B 28 57.412 -6.540 27.886 1.00 32.30 C
ATOM 10 O3' A B 28 57.571 -5.334 28.627 1.00 35.73 O
ATOM 11 C2' A B 28 58.375 -7.571 28.453 1.00 28.71 C
ATOM 12 O2' A B 28 59.687 -7.104 28.652 1.00 31.72 O
ATOM 13 C1' A B 28 57.691 -7.882 29.777 1.00 30.30 C
ATOM 14 N9 A B 28 58.098 -9.161 30.360 1.00 35.43 N
ATOM 15 C8 A B 28 58.740 -9.341 31.554 1.00 40.98 C
ATOM 16 N7 A B 28 59.011 -10.595 31.837 1.00 40.49 N
ATOM 17 C5 A B 28 58.521 -11.291 30.748 1.00 36.52 C
ATOM 18 C6 A B 28 58.506 -12.666 30.438 1.00 40.29 C
ATOM 19 N6 A B 28 59.012 -13.606 31.250 1.00 42.34 N
ATOM 20 N1 A B 28 57.946 -13.030 29.263 1.00 41.82 N
ATOM 21 C2 A B 28 57.442 -12.077 28.462 1.00 43.48 C
ATOM 22 N3 A B 28 57.405 -10.750 28.641 1.00 38.31 N
ATOM 23 C4 A B 28 57.965 -10.420 29.818 1.00 41.51 C
ATOM 24 P U B 29 57.975 -3.952 27.932 1.00 26.15 P
ATOM 25 OP1 U B 29 58.943 -4.223 26.848 1.00 29.22 O
ATOM 26 OP2 U B 29 58.236 -2.938 28.988 1.00 31.74 O
ATOM 27 O5' U B 29 56.622 -3.521 27.197 1.00 28.02 O
TER

Atoms:
OP1: (59.794,-15.003,36.416)
OP2: (59.374,-13.507,34.358)
C3': (56.906,-17.634,33.023)
C1': (55.395,-15.930,32.372)
C5': (57.173,-16.417,35.276)
O4': (55.291,-16.054,33.778)
C8: (55.505,-13.464,32.871)
O2': (56.843,-16.891,30.655)
C6: (54.333,-11.754,30.035)
C5: (54.773,-12.581,31.086)
C4: (54.741,-13.950,30.881)
P: (58.882,-14.439,35.392)
C4': (56.241,-17.041,34.265)
C2': (56.768,-16.497,32.009)
C2: (53.932,-13.692,28.841)
N1: (53.905,-12.353,28.900)
N3: (54.328,-14.575,29.765)
N6: (54.324,-10.415,30.123)
N7: (55.255,-12.289,32.346)
N9: (55.220,-14.511,32.047)
O5': (58.244,-15.710,34.658)
O3': (56.131,-18.762,32.607)
OP1: (54.282,-7.245,23.758)
OP2: (56.178,-8.867,24.439)
C3': (57.412,-6.540,27.886)
C1': (57.691,-7.882,29.777)
C5': (55.483,-8.073,27.223)
O4': (56.306,-7.903,29.482)
C8: (58.740,-9.341,31.554)
O2': (59.687,-7.104,28.652)
C6: (58.506,-12.666,30.438)
C5: (58.521,-11.291,30.748)
C4: (57.965,-10.420,29.818)
P: (54.888,-8.201,24.711)
C4': (56.070,-7.151,28.261)
C2': (58.375,-7.571,28.453)
C2: (57.442,-12.077,28.462)
N1: (57.946,-13.030,29.263)
N3: (57.405,-10.750,28.641)
N6: (59.012,-13.606,31.250)
N7: (59.011,-10.595,31.837)
N9: (58.098,-9.161,30.360)
O5': (55.050,-7.369,26.065)
O3': (57.571,-5.334,28.627)
Image (generated by PyMOL):
PyMOL image
show in jmol