Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0235:0250
Extra
PDB:
ATOM 1 O3' G A 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 2 P A A 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 3 OP1 A A 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 4 OP2 A A 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 5 O5' A A 235 93.930 120.402 -8.651 1.00 64.19 O
ATOM 6 C5' A A 235 92.533 120.520 -8.988 1.00 63.56 C
ATOM 7 C4' A A 235 91.924 121.694 -8.266 1.00 63.92 C
ATOM 8 O4' A A 235 91.811 121.393 -6.848 1.00 63.93 O
ATOM 9 C3' A A 235 92.720 122.991 -8.353 1.00 63.52 C
ATOM 10 O3' A A 235 91.816 124.078 -8.263 1.00 63.91 O
ATOM 11 C2' A A 235 93.551 122.949 -7.080 1.00 64.05 C
ATOM 12 O2' A A 235 93.994 124.225 -6.659 1.00 62.53 O
ATOM 13 C1' A A 235 92.537 122.352 -6.105 1.00 64.72 C
ATOM 14 N9 A A 235 93.114 121.688 -4.939 1.00 66.33 N
ATOM 15 C8 A A 235 93.877 120.545 -4.887 1.00 66.96 C
ATOM 16 N7 A A 235 94.224 120.198 -3.673 1.00 67.32 N
ATOM 17 C5 A A 235 93.655 121.179 -2.872 1.00 66.60 C
ATOM 18 C6 A A 235 93.654 121.380 -1.489 1.00 66.08 C
ATOM 19 N6 A A 235 94.254 120.567 -0.621 1.00 65.94 N
ATOM 20 N1 A A 235 93.001 122.459 -1.015 1.00 66.80 N
ATOM 21 C2 A A 235 92.391 123.273 -1.881 1.00 66.71 C
ATOM 22 N3 A A 235 92.314 123.186 -3.199 1.00 66.51 N
ATOM 23 C4 A A 235 92.976 122.104 -3.639 1.00 66.42 C
ATOM 24 P A A 236 91.326 124.808 -9.595 1.00 64.10 P
ATOM 25 OP1 A A 236 92.402 124.584 -10.598 1.00 64.06 O
ATOM 26 OP2 A A 236 90.915 126.196 -9.238 1.00 63.39 O
ATOM 27 O5' A A 236 90.028 123.997 -10.038 1.00 63.06 O
TER
ATOM 1 O3' A B 249 95.350 123.557 3.667 1.00 55.48 O
ATOM 2 P A B 250 96.917 123.514 4.006 1.00 56.17 P
ATOM 3 OP1 A B 250 97.065 123.441 5.476 1.00 56.31 O
ATOM 4 OP2 A B 250 97.569 124.612 3.263 1.00 57.35 O
ATOM 5 O5' A B 250 97.417 122.130 3.395 1.00 55.07 O
ATOM 6 C5' A B 250 97.040 121.726 2.067 1.00 53.44 C
ATOM 7 C4' A B 250 97.801 120.484 1.662 1.00 53.67 C
ATOM 8 O4' A B 250 97.393 120.099 0.321 1.00 53.72 O
ATOM 9 C3' A B 250 99.315 120.643 1.598 1.00 53.51 C
ATOM 10 O3' A B 250 99.934 119.384 1.853 1.00 51.72 O
ATOM 11 C2' A B 250 99.531 121.026 0.140 1.00 54.32 C
ATOM 12 O2' A B 250 100.842 120.773 -0.318 1.00 56.18 O
ATOM 13 C1' A B 250 98.513 120.116 -0.539 1.00 54.95 C
ATOM 14 N9 A B 250 98.066 120.543 -1.863 1.00 55.82 N
ATOM 15 C8 A B 250 98.233 119.870 -3.045 1.00 56.53 C
ATOM 16 N7 A B 250 97.695 120.471 -4.078 1.00 58.06 N
ATOM 17 C5 A B 250 97.144 121.626 -3.541 1.00 58.23 C
ATOM 18 C6 A B 250 96.428 122.696 -4.119 1.00 58.52 C
ATOM 19 N6 A B 250 96.137 122.784 -5.417 1.00 57.75 N
ATOM 20 N1 A B 250 96.021 123.689 -3.302 1.00 60.04 N
ATOM 21 C2 A B 250 96.320 123.609 -1.996 1.00 60.61 C
ATOM 22 N3 A B 250 96.987 122.660 -1.338 1.00 59.29 N
ATOM 23 C4 A B 250 97.374 121.686 -2.177 1.00 57.67 C
ATOM 24 P U B 251 101.068 119.261 2.986 1.00 52.36 P
ATOM 25 OP1 U B 251 101.835 120.524 3.102 1.00 51.10 O
ATOM 26 OP2 U B 251 101.789 117.986 2.762 1.00 52.01 O
ATOM 27 O5' U B 251 100.236 119.132 4.333 1.00 54.53 O
TER
ATOM 2 P A A 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 3 OP1 A A 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 4 OP2 A A 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 5 O5' A A 235 93.930 120.402 -8.651 1.00 64.19 O
ATOM 6 C5' A A 235 92.533 120.520 -8.988 1.00 63.56 C
ATOM 7 C4' A A 235 91.924 121.694 -8.266 1.00 63.92 C
ATOM 8 O4' A A 235 91.811 121.393 -6.848 1.00 63.93 O
ATOM 9 C3' A A 235 92.720 122.991 -8.353 1.00 63.52 C
ATOM 10 O3' A A 235 91.816 124.078 -8.263 1.00 63.91 O
ATOM 11 C2' A A 235 93.551 122.949 -7.080 1.00 64.05 C
ATOM 12 O2' A A 235 93.994 124.225 -6.659 1.00 62.53 O
ATOM 13 C1' A A 235 92.537 122.352 -6.105 1.00 64.72 C
ATOM 14 N9 A A 235 93.114 121.688 -4.939 1.00 66.33 N
ATOM 15 C8 A A 235 93.877 120.545 -4.887 1.00 66.96 C
ATOM 16 N7 A A 235 94.224 120.198 -3.673 1.00 67.32 N
ATOM 17 C5 A A 235 93.655 121.179 -2.872 1.00 66.60 C
ATOM 18 C6 A A 235 93.654 121.380 -1.489 1.00 66.08 C
ATOM 19 N6 A A 235 94.254 120.567 -0.621 1.00 65.94 N
ATOM 20 N1 A A 235 93.001 122.459 -1.015 1.00 66.80 N
ATOM 21 C2 A A 235 92.391 123.273 -1.881 1.00 66.71 C
ATOM 22 N3 A A 235 92.314 123.186 -3.199 1.00 66.51 N
ATOM 23 C4 A A 235 92.976 122.104 -3.639 1.00 66.42 C
ATOM 24 P A A 236 91.326 124.808 -9.595 1.00 64.10 P
ATOM 25 OP1 A A 236 92.402 124.584 -10.598 1.00 64.06 O
ATOM 26 OP2 A A 236 90.915 126.196 -9.238 1.00 63.39 O
ATOM 27 O5' A A 236 90.028 123.997 -10.038 1.00 63.06 O
TER
ATOM 1 O3' A B 249 95.350 123.557 3.667 1.00 55.48 O
ATOM 2 P A B 250 96.917 123.514 4.006 1.00 56.17 P
ATOM 3 OP1 A B 250 97.065 123.441 5.476 1.00 56.31 O
ATOM 4 OP2 A B 250 97.569 124.612 3.263 1.00 57.35 O
ATOM 5 O5' A B 250 97.417 122.130 3.395 1.00 55.07 O
ATOM 6 C5' A B 250 97.040 121.726 2.067 1.00 53.44 C
ATOM 7 C4' A B 250 97.801 120.484 1.662 1.00 53.67 C
ATOM 8 O4' A B 250 97.393 120.099 0.321 1.00 53.72 O
ATOM 9 C3' A B 250 99.315 120.643 1.598 1.00 53.51 C
ATOM 10 O3' A B 250 99.934 119.384 1.853 1.00 51.72 O
ATOM 11 C2' A B 250 99.531 121.026 0.140 1.00 54.32 C
ATOM 12 O2' A B 250 100.842 120.773 -0.318 1.00 56.18 O
ATOM 13 C1' A B 250 98.513 120.116 -0.539 1.00 54.95 C
ATOM 14 N9 A B 250 98.066 120.543 -1.863 1.00 55.82 N
ATOM 15 C8 A B 250 98.233 119.870 -3.045 1.00 56.53 C
ATOM 16 N7 A B 250 97.695 120.471 -4.078 1.00 58.06 N
ATOM 17 C5 A B 250 97.144 121.626 -3.541 1.00 58.23 C
ATOM 18 C6 A B 250 96.428 122.696 -4.119 1.00 58.52 C
ATOM 19 N6 A B 250 96.137 122.784 -5.417 1.00 57.75 N
ATOM 20 N1 A B 250 96.021 123.689 -3.302 1.00 60.04 N
ATOM 21 C2 A B 250 96.320 123.609 -1.996 1.00 60.61 C
ATOM 22 N3 A B 250 96.987 122.660 -1.338 1.00 59.29 N
ATOM 23 C4 A B 250 97.374 121.686 -2.177 1.00 57.67 C
ATOM 24 P U B 251 101.068 119.261 2.986 1.00 52.36 P
ATOM 25 OP1 U B 251 101.835 120.524 3.102 1.00 51.10 O
ATOM 26 OP2 U B 251 101.789 117.986 2.762 1.00 52.01 O
ATOM 27 O5' U B 251 100.236 119.132 4.333 1.00 54.53 O
TER
Atoms:
OP1: (94.225,118.524,-10.242)
OP2: (96.187,119.272,-8.757)
C3': (92.720,122.991,-8.353)
C1': (92.537,122.352,-6.105)
C5': (92.533,120.520,-8.988)
O4': (91.811,121.393,-6.848)
C8: (93.877,120.545,-4.887)
O2': (93.994,124.225,-6.659)
C6: (93.654,121.380,-1.489)
C5: (93.655,121.179,-2.872)
C4: (92.976,122.104,-3.639)
P: (94.725,119.056,-8.947)
C4': (91.924,121.694,-8.266)
C2': (93.551,122.949,-7.080)
C2: (92.391,123.273,-1.881)
N1: (93.001,122.459,-1.015)
N3: (92.314,123.186,-3.199)
N6: (94.254,120.567,-0.621)
N7: (94.224,120.198,-3.673)
N9: (93.114,121.688,-4.939)
O5': (93.930,120.402,-8.651)
O3': (91.816,124.078,-8.263)
OP2: (96.187,119.272,-8.757)
C3': (92.720,122.991,-8.353)
C1': (92.537,122.352,-6.105)
C5': (92.533,120.520,-8.988)
O4': (91.811,121.393,-6.848)
C8: (93.877,120.545,-4.887)
O2': (93.994,124.225,-6.659)
C6: (93.654,121.380,-1.489)
C5: (93.655,121.179,-2.872)
C4: (92.976,122.104,-3.639)
P: (94.725,119.056,-8.947)
C4': (91.924,121.694,-8.266)
C2': (93.551,122.949,-7.080)
C2: (92.391,123.273,-1.881)
N1: (93.001,122.459,-1.015)
N3: (92.314,123.186,-3.199)
N6: (94.254,120.567,-0.621)
N7: (94.224,120.198,-3.673)
N9: (93.114,121.688,-4.939)
O5': (93.930,120.402,-8.651)
O3': (91.816,124.078,-8.263)
OP1: (97.065,123.441,5.476)
OP2: (97.569,124.612,3.263)
C3': (99.315,120.643,1.598)
C1': (98.513,120.116,-0.539)
C5': (97.040,121.726,2.067)
O4': (97.393,120.099,0.321)
C8: (98.233,119.870,-3.045)
O2': (100.842,120.773,-0.318)
C6: (96.428,122.696,-4.119)
C5: (97.144,121.626,-3.541)
C4: (97.374,121.686,-2.177)
P: (96.917,123.514,4.006)
C4': (97.801,120.484,1.662)
C2': (99.531,121.026,0.140)
C2: (96.320,123.609,-1.996)
N1: (96.021,123.689,-3.302)
N3: (96.987,122.660,-1.338)
N6: (96.137,122.784,-5.417)
N7: (97.695,120.471,-4.078)
N9: (98.066,120.543,-1.863)
O5': (97.417,122.130,3.395)
O3': (99.934,119.384,1.853)
OP2: (97.569,124.612,3.263)
C3': (99.315,120.643,1.598)
C1': (98.513,120.116,-0.539)
C5': (97.040,121.726,2.067)
O4': (97.393,120.099,0.321)
C8: (98.233,119.870,-3.045)
O2': (100.842,120.773,-0.318)
C6: (96.428,122.696,-4.119)
C5: (97.144,121.626,-3.541)
C4: (97.374,121.686,-2.177)
P: (96.917,123.514,4.006)
C4': (97.801,120.484,1.662)
C2': (99.531,121.026,0.140)
C2: (96.320,123.609,-1.996)
N1: (96.021,123.689,-3.302)
N3: (96.987,122.660,-1.338)
N6: (96.137,122.784,-5.417)
N7: (97.695,120.471,-4.078)
N9: (98.066,120.543,-1.863)
O5': (97.417,122.130,3.395)
O3': (99.934,119.384,1.853)
Image (generated by PyMOL):