Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A55:A18
Extra
PDB:
ATOM 1 O3' C A 54 15.733 16.358 -40.402 1.00 16.51 O
ATOM 2 P G A 55 15.415 16.004 -38.832 1.00 15.74 P
ATOM 3 OP1 G A 55 16.552 16.851 -38.313 1.00 15.89 O
ATOM 4 OP2 G A 55 15.511 14.556 -38.777 1.00 15.74 O
ATOM 5 O5' G A 55 13.976 16.703 -38.818 1.00 15.08 O
ATOM 6 C5' G A 55 14.249 18.141 -38.709 1.00 14.41 C
ATOM 7 C4' G A 55 13.015 18.781 -39.255 1.00 14.19 C
ATOM 8 O4' G A 55 12.526 17.954 -40.307 1.00 13.87 O
ATOM 9 C3' G A 55 11.833 18.958 -38.340 1.00 14.46 C
ATOM 10 O3' G A 55 11.941 20.051 -37.426 1.00 15.25 O
ATOM 11 C2' G A 55 10.701 19.145 -39.351 1.00 14.03 C
ATOM 12 O2' G A 55 10.781 20.485 -39.788 1.00 14.17 O
ATOM 13 C1' G A 55 11.122 18.220 -40.457 1.00 13.39 C
ATOM 14 N9 G A 55 10.343 16.989 -40.402 1.00 12.79 N
ATOM 15 C8 G A 55 10.781 15.718 -40.143 1.00 12.72 C
ATOM 16 N7 G A 55 9.825 14.812 -40.156 1.00 12.41 N
ATOM 17 C5 G A 55 8.694 15.570 -40.443 1.00 12.22 C
ATOM 18 C6 G A 55 7.346 15.186 -40.580 1.00 12.35 C
ATOM 19 O6 G A 55 6.914 14.024 -40.484 1.00 13.00 O
ATOM 20 N1 G A 55 6.505 16.211 -40.853 1.00 11.79 N
ATOM 21 C2 G A 55 6.914 17.491 -40.976 1.00 11.93 C
ATOM 22 N2 G A 55 5.936 18.377 -41.249 1.00 12.15 N
ATOM 23 N3 G A 55 8.165 17.904 -40.853 1.00 12.12 N
ATOM 24 C4 G A 55 9.001 16.890 -40.580 1.00 12.23 C
TER
ATOM 1 O3' G B 17 3.986 24.106 -42.941 1.00 32.68 O
ATOM 2 P A B 18 3.338 25.414 -42.286 1.00 35.16 P
ATOM 3 OP1 A B 18 2.015 25.668 -42.910 1.00 35.16 O
ATOM 4 OP2 A B 18 4.343 26.505 -42.358 1.00 35.07 O
ATOM 5 O5' A B 18 3.128 24.979 -40.757 1.00 36.64 O
ATOM 6 C5' A B 18 2.097 25.650 -39.970 1.00 38.78 C
ATOM 7 C4' A B 18 2.534 25.584 -38.509 1.00 40.65 C
ATOM 8 O4' A B 18 2.955 24.233 -38.250 1.00 40.69 O
ATOM 9 C3' A B 18 3.702 26.478 -38.165 1.00 42.14 C
ATOM 10 O3' A B 18 3.204 27.755 -37.768 1.00 44.77 O
ATOM 11 C2' A B 18 4.383 25.723 -37.042 1.00 41.52 C
ATOM 12 O2' A B 18 3.725 26.024 -35.848 1.00 41.66 O
ATOM 13 C1' A B 18 4.115 24.249 -37.430 1.00 40.70 C
ATOM 14 N9 A B 18 5.157 23.633 -38.263 1.00 40.25 N
ATOM 15 C8 A B 18 6.031 24.257 -39.105 1.00 40.13 C
ATOM 16 N7 A B 18 6.827 23.435 -39.724 1.00 40.08 N
ATOM 17 C5 A B 18 6.445 22.188 -39.257 1.00 39.92 C
ATOM 18 C6 A B 18 6.909 20.890 -39.530 1.00 39.79 C
ATOM 19 N6 A B 18 7.910 20.633 -40.392 1.00 39.66 N
ATOM 20 N1 A B 18 6.306 19.879 -38.887 1.00 39.93 N
ATOM 21 C2 A B 18 5.305 20.143 -38.032 1.00 39.99 C
ATOM 22 N3 A B 18 4.792 21.317 -37.705 1.00 40.00 N
ATOM 23 C4 A B 18 5.421 22.293 -38.361 1.00 39.97 C
ATOM 24 P A B 19 3.719 29.091 -38.445 1.00 47.01 P
ATOM 25 OP1 A B 19 4.364 28.777 -39.742 1.00 47.36 O
ATOM 26 OP2 A B 19 4.511 29.859 -37.461 1.00 46.96 O
ATOM 27 O5' A B 19 2.342 29.859 -38.689 1.00 48.65 O
TER
ATOM 2 P G A 55 15.415 16.004 -38.832 1.00 15.74 P
ATOM 3 OP1 G A 55 16.552 16.851 -38.313 1.00 15.89 O
ATOM 4 OP2 G A 55 15.511 14.556 -38.777 1.00 15.74 O
ATOM 5 O5' G A 55 13.976 16.703 -38.818 1.00 15.08 O
ATOM 6 C5' G A 55 14.249 18.141 -38.709 1.00 14.41 C
ATOM 7 C4' G A 55 13.015 18.781 -39.255 1.00 14.19 C
ATOM 8 O4' G A 55 12.526 17.954 -40.307 1.00 13.87 O
ATOM 9 C3' G A 55 11.833 18.958 -38.340 1.00 14.46 C
ATOM 10 O3' G A 55 11.941 20.051 -37.426 1.00 15.25 O
ATOM 11 C2' G A 55 10.701 19.145 -39.351 1.00 14.03 C
ATOM 12 O2' G A 55 10.781 20.485 -39.788 1.00 14.17 O
ATOM 13 C1' G A 55 11.122 18.220 -40.457 1.00 13.39 C
ATOM 14 N9 G A 55 10.343 16.989 -40.402 1.00 12.79 N
ATOM 15 C8 G A 55 10.781 15.718 -40.143 1.00 12.72 C
ATOM 16 N7 G A 55 9.825 14.812 -40.156 1.00 12.41 N
ATOM 17 C5 G A 55 8.694 15.570 -40.443 1.00 12.22 C
ATOM 18 C6 G A 55 7.346 15.186 -40.580 1.00 12.35 C
ATOM 19 O6 G A 55 6.914 14.024 -40.484 1.00 13.00 O
ATOM 20 N1 G A 55 6.505 16.211 -40.853 1.00 11.79 N
ATOM 21 C2 G A 55 6.914 17.491 -40.976 1.00 11.93 C
ATOM 22 N2 G A 55 5.936 18.377 -41.249 1.00 12.15 N
ATOM 23 N3 G A 55 8.165 17.904 -40.853 1.00 12.12 N
ATOM 24 C4 G A 55 9.001 16.890 -40.580 1.00 12.23 C
TER
ATOM 1 O3' G B 17 3.986 24.106 -42.941 1.00 32.68 O
ATOM 2 P A B 18 3.338 25.414 -42.286 1.00 35.16 P
ATOM 3 OP1 A B 18 2.015 25.668 -42.910 1.00 35.16 O
ATOM 4 OP2 A B 18 4.343 26.505 -42.358 1.00 35.07 O
ATOM 5 O5' A B 18 3.128 24.979 -40.757 1.00 36.64 O
ATOM 6 C5' A B 18 2.097 25.650 -39.970 1.00 38.78 C
ATOM 7 C4' A B 18 2.534 25.584 -38.509 1.00 40.65 C
ATOM 8 O4' A B 18 2.955 24.233 -38.250 1.00 40.69 O
ATOM 9 C3' A B 18 3.702 26.478 -38.165 1.00 42.14 C
ATOM 10 O3' A B 18 3.204 27.755 -37.768 1.00 44.77 O
ATOM 11 C2' A B 18 4.383 25.723 -37.042 1.00 41.52 C
ATOM 12 O2' A B 18 3.725 26.024 -35.848 1.00 41.66 O
ATOM 13 C1' A B 18 4.115 24.249 -37.430 1.00 40.70 C
ATOM 14 N9 A B 18 5.157 23.633 -38.263 1.00 40.25 N
ATOM 15 C8 A B 18 6.031 24.257 -39.105 1.00 40.13 C
ATOM 16 N7 A B 18 6.827 23.435 -39.724 1.00 40.08 N
ATOM 17 C5 A B 18 6.445 22.188 -39.257 1.00 39.92 C
ATOM 18 C6 A B 18 6.909 20.890 -39.530 1.00 39.79 C
ATOM 19 N6 A B 18 7.910 20.633 -40.392 1.00 39.66 N
ATOM 20 N1 A B 18 6.306 19.879 -38.887 1.00 39.93 N
ATOM 21 C2 A B 18 5.305 20.143 -38.032 1.00 39.99 C
ATOM 22 N3 A B 18 4.792 21.317 -37.705 1.00 40.00 N
ATOM 23 C4 A B 18 5.421 22.293 -38.361 1.00 39.97 C
ATOM 24 P A B 19 3.719 29.091 -38.445 1.00 47.01 P
ATOM 25 OP1 A B 19 4.364 28.777 -39.742 1.00 47.36 O
ATOM 26 OP2 A B 19 4.511 29.859 -37.461 1.00 46.96 O
ATOM 27 O5' A B 19 2.342 29.859 -38.689 1.00 48.65 O
TER
Atoms:
OP1: (16.552,16.851,-38.313)
OP2: (15.511,14.556,-38.777)
C3': (11.833,18.958,-38.340)
C1': (11.122,18.220,-40.457)
C5': (14.249,18.141,-38.709)
O6: (6.914,14.024,-40.484)
O4': (12.526,17.954,-40.307)
C8: (10.781,15.718,-40.143)
C2: (6.914,17.491,-40.976)
C6: (7.346,15.186,-40.580)
C5: (8.694,15.570,-40.443)
C4: (9.001,16.890,-40.580)
P: (15.415,16.004,-38.832)
C4': (13.015,18.781,-39.255)
C2': (10.701,19.145,-39.351)
O2': (10.781,20.485,-39.788)
N1: (6.505,16.211,-40.853)
N2: (5.936,18.377,-41.249)
N3: (8.165,17.904,-40.853)
N7: (9.825,14.812,-40.156)
N9: (10.343,16.989,-40.402)
O5': (13.976,16.703,-38.818)
O3': (11.941,20.051,-37.426)
OP2: (15.511,14.556,-38.777)
C3': (11.833,18.958,-38.340)
C1': (11.122,18.220,-40.457)
C5': (14.249,18.141,-38.709)
O6: (6.914,14.024,-40.484)
O4': (12.526,17.954,-40.307)
C8: (10.781,15.718,-40.143)
C2: (6.914,17.491,-40.976)
C6: (7.346,15.186,-40.580)
C5: (8.694,15.570,-40.443)
C4: (9.001,16.890,-40.580)
P: (15.415,16.004,-38.832)
C4': (13.015,18.781,-39.255)
C2': (10.701,19.145,-39.351)
O2': (10.781,20.485,-39.788)
N1: (6.505,16.211,-40.853)
N2: (5.936,18.377,-41.249)
N3: (8.165,17.904,-40.853)
N7: (9.825,14.812,-40.156)
N9: (10.343,16.989,-40.402)
O5': (13.976,16.703,-38.818)
O3': (11.941,20.051,-37.426)
OP1: (2.015,25.668,-42.910)
OP2: (4.343,26.505,-42.358)
C3': (3.702,26.478,-38.165)
C1': (4.115,24.249,-37.430)
C5': (2.097,25.650,-39.970)
O4': (2.955,24.233,-38.250)
C8: (6.031,24.257,-39.105)
O2': (3.725,26.024,-35.848)
C6: (6.909,20.890,-39.530)
C5: (6.445,22.188,-39.257)
C4: (5.421,22.293,-38.361)
P: (3.338,25.414,-42.286)
C4': (2.534,25.584,-38.509)
C2': (4.383,25.723,-37.042)
C2: (5.305,20.143,-38.032)
N1: (6.306,19.879,-38.887)
N3: (4.792,21.317,-37.705)
N6: (7.910,20.633,-40.392)
N7: (6.827,23.435,-39.724)
N9: (5.157,23.633,-38.263)
O5': (3.128,24.979,-40.757)
O3': (3.204,27.755,-37.768)
OP2: (4.343,26.505,-42.358)
C3': (3.702,26.478,-38.165)
C1': (4.115,24.249,-37.430)
C5': (2.097,25.650,-39.970)
O4': (2.955,24.233,-38.250)
C8: (6.031,24.257,-39.105)
O2': (3.725,26.024,-35.848)
C6: (6.909,20.890,-39.530)
C5: (6.445,22.188,-39.257)
C4: (5.421,22.293,-38.361)
P: (3.338,25.414,-42.286)
C4': (2.534,25.584,-38.509)
C2': (4.383,25.723,-37.042)
C2: (5.305,20.143,-38.032)
N1: (6.306,19.879,-38.887)
N3: (4.792,21.317,-37.705)
N6: (7.910,20.633,-40.392)
N7: (6.827,23.435,-39.724)
N9: (5.157,23.633,-38.263)
O5': (3.128,24.979,-40.757)
O3': (3.204,27.755,-37.768)
Image (generated by PyMOL):