Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A22:A61
Extra
PDB:
ATOM 1 O3' G A 21 1.617 -6.832 24.219 1.00104.95 O
ATOM 2 P G A 22 1.672 -8.239 23.474 1.00105.94 P
ATOM 3 OP1 G A 22 1.678 -8.003 22.011 1.00106.13 O
ATOM 4 OP2 G A 22 0.624 -9.079 24.110 1.00105.58 O
ATOM 5 O5' G A 22 3.115 -8.823 23.853 1.00105.80 O
ATOM 6 C5' G A 22 4.274 -8.336 23.202 1.00105.37 C
ATOM 7 C4' G A 22 5.477 -9.176 23.554 1.00104.78 C
ATOM 8 O4' G A 22 5.689 -9.314 24.987 1.00104.31 O
ATOM 9 C3' G A 22 5.349 -10.607 23.079 1.00103.39 C
ATOM 10 O3' G A 22 5.482 -10.670 21.688 1.00102.53 O
ATOM 11 C2' G A 22 6.511 -11.215 23.862 1.00103.44 C
ATOM 12 O2' G A 22 7.797 -10.828 23.416 1.00102.82 O
ATOM 13 C1' G A 22 6.220 -10.620 25.237 1.00104.24 C
ATOM 14 N9 G A 22 5.293 -11.470 26.010 1.00104.21 N
ATOM 15 C8 G A 22 3.941 -11.259 26.154 1.00104.06 C
ATOM 16 N7 G A 22 3.336 -12.149 26.877 1.00103.97 N
ATOM 17 C5 G A 22 4.337 -13.030 27.239 1.00103.51 C
ATOM 18 C6 G A 22 4.246 -14.201 28.034 1.00103.19 C
ATOM 19 O6 G A 22 3.234 -14.674 28.579 1.00102.55 O
ATOM 20 N1 G A 22 5.487 -14.824 28.171 1.00102.35 N
ATOM 21 C2 G A 22 6.660 -14.373 27.622 1.00101.95 C
ATOM 22 N2 G A 22 7.737 -15.121 27.889 1.00100.92 N
ATOM 23 N3 G A 22 6.753 -13.277 26.871 1.00103.13 N
ATOM 24 C4 G A 22 5.555 -12.642 26.715 1.00103.53 C
ATOM 25 P A A 23 5.439 -12.098 20.968 1.00105.11 P
ATOM 26 OP1 A A 23 5.298 -13.178 21.970 1.00106.14 O
ATOM 27 OP2 A A 23 6.526 -12.187 19.970 1.00106.00 O
ATOM 28 O5' A A 23 4.080 -11.977 20.162 1.00102.72 O
TER
ATOM 1 O3' A B 60 16.642 -7.265 24.062 1.00 78.26 O
ATOM 2 P A B 61 16.551 -8.679 23.283 1.00 78.32 P
ATOM 3 OP1 A B 61 17.725 -8.942 22.415 1.00 79.74 O
ATOM 4 OP2 A B 61 15.199 -8.766 22.715 1.00 77.93 O
ATOM 5 O5' A B 61 16.602 -9.778 24.432 1.00 80.01 O
ATOM 6 C5' A B 61 17.849 -10.273 24.918 1.00 80.70 C
ATOM 7 C4' A B 61 17.618 -11.473 25.798 1.00 80.24 C
ATOM 8 O4' A B 61 16.457 -11.158 26.609 1.00 81.64 O
ATOM 9 C3' A B 61 17.295 -12.720 25.017 1.00 80.61 C
ATOM 10 O3' A B 61 18.418 -13.556 24.771 1.00 78.94 O
ATOM 11 C2' A B 61 16.309 -13.406 25.947 1.00 82.74 C
ATOM 12 O2' A B 61 16.993 -14.301 26.780 1.00 85.66 O
ATOM 13 C1' A B 61 15.665 -12.307 26.781 1.00 84.44 C
ATOM 14 N9 A B 61 14.274 -12.064 26.375 1.00 88.60 N
ATOM 15 C8 A B 61 13.778 -11.072 25.572 1.00 89.68 C
ATOM 16 N7 A B 61 12.483 -11.127 25.386 1.00 89.96 N
ATOM 17 C5 A B 61 12.090 -12.239 26.105 1.00 90.61 C
ATOM 18 C6 A B 61 10.830 -12.847 26.327 1.00 91.62 C
ATOM 19 N6 A B 61 9.687 -12.395 25.799 1.00 92.57 N
ATOM 20 N1 A B 61 10.777 -13.947 27.109 1.00 91.46 N
ATOM 21 C2 A B 61 11.922 -14.395 27.625 1.00 91.00 C
ATOM 22 N3 A B 61 13.158 -13.908 27.491 1.00 90.45 N
ATOM 23 C4 A B 61 13.179 -12.823 26.716 1.00 90.13 C
ATOM 24 P U B 62 18.116 -14.989 24.058 1.00 83.50 P
ATOM 25 OP1 U B 62 16.906 -15.633 24.627 1.00 79.94 O
ATOM 26 OP2 U B 62 19.355 -15.787 23.889 1.00 80.65 O
ATOM 27 O5' U B 62 17.699 -14.493 22.611 1.00 80.51 O
TER
ATOM 2 P G A 22 1.672 -8.239 23.474 1.00105.94 P
ATOM 3 OP1 G A 22 1.678 -8.003 22.011 1.00106.13 O
ATOM 4 OP2 G A 22 0.624 -9.079 24.110 1.00105.58 O
ATOM 5 O5' G A 22 3.115 -8.823 23.853 1.00105.80 O
ATOM 6 C5' G A 22 4.274 -8.336 23.202 1.00105.37 C
ATOM 7 C4' G A 22 5.477 -9.176 23.554 1.00104.78 C
ATOM 8 O4' G A 22 5.689 -9.314 24.987 1.00104.31 O
ATOM 9 C3' G A 22 5.349 -10.607 23.079 1.00103.39 C
ATOM 10 O3' G A 22 5.482 -10.670 21.688 1.00102.53 O
ATOM 11 C2' G A 22 6.511 -11.215 23.862 1.00103.44 C
ATOM 12 O2' G A 22 7.797 -10.828 23.416 1.00102.82 O
ATOM 13 C1' G A 22 6.220 -10.620 25.237 1.00104.24 C
ATOM 14 N9 G A 22 5.293 -11.470 26.010 1.00104.21 N
ATOM 15 C8 G A 22 3.941 -11.259 26.154 1.00104.06 C
ATOM 16 N7 G A 22 3.336 -12.149 26.877 1.00103.97 N
ATOM 17 C5 G A 22 4.337 -13.030 27.239 1.00103.51 C
ATOM 18 C6 G A 22 4.246 -14.201 28.034 1.00103.19 C
ATOM 19 O6 G A 22 3.234 -14.674 28.579 1.00102.55 O
ATOM 20 N1 G A 22 5.487 -14.824 28.171 1.00102.35 N
ATOM 21 C2 G A 22 6.660 -14.373 27.622 1.00101.95 C
ATOM 22 N2 G A 22 7.737 -15.121 27.889 1.00100.92 N
ATOM 23 N3 G A 22 6.753 -13.277 26.871 1.00103.13 N
ATOM 24 C4 G A 22 5.555 -12.642 26.715 1.00103.53 C
ATOM 25 P A A 23 5.439 -12.098 20.968 1.00105.11 P
ATOM 26 OP1 A A 23 5.298 -13.178 21.970 1.00106.14 O
ATOM 27 OP2 A A 23 6.526 -12.187 19.970 1.00106.00 O
ATOM 28 O5' A A 23 4.080 -11.977 20.162 1.00102.72 O
TER
ATOM 1 O3' A B 60 16.642 -7.265 24.062 1.00 78.26 O
ATOM 2 P A B 61 16.551 -8.679 23.283 1.00 78.32 P
ATOM 3 OP1 A B 61 17.725 -8.942 22.415 1.00 79.74 O
ATOM 4 OP2 A B 61 15.199 -8.766 22.715 1.00 77.93 O
ATOM 5 O5' A B 61 16.602 -9.778 24.432 1.00 80.01 O
ATOM 6 C5' A B 61 17.849 -10.273 24.918 1.00 80.70 C
ATOM 7 C4' A B 61 17.618 -11.473 25.798 1.00 80.24 C
ATOM 8 O4' A B 61 16.457 -11.158 26.609 1.00 81.64 O
ATOM 9 C3' A B 61 17.295 -12.720 25.017 1.00 80.61 C
ATOM 10 O3' A B 61 18.418 -13.556 24.771 1.00 78.94 O
ATOM 11 C2' A B 61 16.309 -13.406 25.947 1.00 82.74 C
ATOM 12 O2' A B 61 16.993 -14.301 26.780 1.00 85.66 O
ATOM 13 C1' A B 61 15.665 -12.307 26.781 1.00 84.44 C
ATOM 14 N9 A B 61 14.274 -12.064 26.375 1.00 88.60 N
ATOM 15 C8 A B 61 13.778 -11.072 25.572 1.00 89.68 C
ATOM 16 N7 A B 61 12.483 -11.127 25.386 1.00 89.96 N
ATOM 17 C5 A B 61 12.090 -12.239 26.105 1.00 90.61 C
ATOM 18 C6 A B 61 10.830 -12.847 26.327 1.00 91.62 C
ATOM 19 N6 A B 61 9.687 -12.395 25.799 1.00 92.57 N
ATOM 20 N1 A B 61 10.777 -13.947 27.109 1.00 91.46 N
ATOM 21 C2 A B 61 11.922 -14.395 27.625 1.00 91.00 C
ATOM 22 N3 A B 61 13.158 -13.908 27.491 1.00 90.45 N
ATOM 23 C4 A B 61 13.179 -12.823 26.716 1.00 90.13 C
ATOM 24 P U B 62 18.116 -14.989 24.058 1.00 83.50 P
ATOM 25 OP1 U B 62 16.906 -15.633 24.627 1.00 79.94 O
ATOM 26 OP2 U B 62 19.355 -15.787 23.889 1.00 80.65 O
ATOM 27 O5' U B 62 17.699 -14.493 22.611 1.00 80.51 O
TER
Atoms:
OP1: (1.678,-8.003,22.011)
OP2: (0.624,-9.079,24.110)
C3': (5.349,-10.607,23.079)
C1': (6.220,-10.620,25.237)
C5': (4.274,-8.336,23.202)
O6: (3.234,-14.674,28.579)
O4': (5.689,-9.314,24.987)
C8: (3.941,-11.259,26.154)
C2: (6.660,-14.373,27.622)
C6: (4.246,-14.201,28.034)
C5: (4.337,-13.030,27.239)
C4: (5.555,-12.642,26.715)
P: (1.672,-8.239,23.474)
C4': (5.477,-9.176,23.554)
C2': (6.511,-11.215,23.862)
O2': (7.797,-10.828,23.416)
N1: (5.487,-14.824,28.171)
N2: (7.737,-15.121,27.889)
N3: (6.753,-13.277,26.871)
N7: (3.336,-12.149,26.877)
N9: (5.293,-11.470,26.010)
O5': (3.115,-8.823,23.853)
O3': (5.482,-10.670,21.688)
OP2: (0.624,-9.079,24.110)
C3': (5.349,-10.607,23.079)
C1': (6.220,-10.620,25.237)
C5': (4.274,-8.336,23.202)
O6: (3.234,-14.674,28.579)
O4': (5.689,-9.314,24.987)
C8: (3.941,-11.259,26.154)
C2: (6.660,-14.373,27.622)
C6: (4.246,-14.201,28.034)
C5: (4.337,-13.030,27.239)
C4: (5.555,-12.642,26.715)
P: (1.672,-8.239,23.474)
C4': (5.477,-9.176,23.554)
C2': (6.511,-11.215,23.862)
O2': (7.797,-10.828,23.416)
N1: (5.487,-14.824,28.171)
N2: (7.737,-15.121,27.889)
N3: (6.753,-13.277,26.871)
N7: (3.336,-12.149,26.877)
N9: (5.293,-11.470,26.010)
O5': (3.115,-8.823,23.853)
O3': (5.482,-10.670,21.688)
OP1: (17.725,-8.942,22.415)
OP2: (15.199,-8.766,22.715)
C3': (17.295,-12.720,25.017)
C1': (15.665,-12.307,26.781)
C5': (17.849,-10.273,24.918)
O4': (16.457,-11.158,26.609)
C8: (13.778,-11.072,25.572)
O2': (16.993,-14.301,26.780)
C6: (10.830,-12.847,26.327)
C5: (12.090,-12.239,26.105)
C4: (13.179,-12.823,26.716)
P: (16.551,-8.679,23.283)
C4': (17.618,-11.473,25.798)
C2': (16.309,-13.406,25.947)
C2: (11.922,-14.395,27.625)
N1: (10.777,-13.947,27.109)
N3: (13.158,-13.908,27.491)
N6: (9.687,-12.395,25.799)
N7: (12.483,-11.127,25.386)
N9: (14.274,-12.064,26.375)
O5': (16.602,-9.778,24.432)
O3': (18.418,-13.556,24.771)
OP2: (15.199,-8.766,22.715)
C3': (17.295,-12.720,25.017)
C1': (15.665,-12.307,26.781)
C5': (17.849,-10.273,24.918)
O4': (16.457,-11.158,26.609)
C8: (13.778,-11.072,25.572)
O2': (16.993,-14.301,26.780)
C6: (10.830,-12.847,26.327)
C5: (12.090,-12.239,26.105)
C4: (13.179,-12.823,26.716)
P: (16.551,-8.679,23.283)
C4': (17.618,-11.473,25.798)
C2': (16.309,-13.406,25.947)
C2: (11.922,-14.395,27.625)
N1: (10.777,-13.947,27.109)
N3: (13.158,-13.908,27.491)
N6: (9.687,-12.395,25.799)
N7: (12.483,-11.127,25.386)
N9: (14.274,-12.064,26.375)
O5': (16.602,-9.778,24.432)
O3': (18.418,-13.556,24.771)
Image (generated by PyMOL):