Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NPQ:C6:C40
Extra
PDB:
ATOM 1 O3' A A 5 5.677 -10.399 33.006 1.00 40.92 O
ATOM 2 P G A 6 5.556 -9.166 31.994 1.00 39.19 P
ATOM 3 OP1 G A 6 4.580 -9.534 30.946 1.00 51.11 O
ATOM 4 OP2 G A 6 6.924 -8.755 31.611 1.00 47.55 O
ATOM 5 O5' G A 6 4.928 -8.014 32.910 1.00 44.31 O
ATOM 6 C5' G A 6 3.653 -8.208 33.509 1.00 41.65 C
ATOM 7 C4' G A 6 3.307 -7.068 34.450 1.00 38.95 C
ATOM 8 O4' G A 6 4.234 -7.038 35.562 1.00 36.12 O
ATOM 9 C3' G A 6 3.411 -5.674 33.853 1.00 39.85 C
ATOM 10 O3' G A 6 2.234 -5.374 33.116 1.00 41.08 O
ATOM 11 C2' G A 6 3.518 -4.820 35.111 1.00 35.97 C
ATOM 12 O2' G A 6 2.254 -4.556 35.688 1.00 29.87 O
ATOM 13 C1' G A 6 4.342 -5.709 36.041 1.00 34.79 C
ATOM 14 N9 G A 6 5.754 -5.343 36.100 1.00 35.95 N
ATOM 15 C8 G A 6 6.756 -5.769 35.263 1.00 39.57 C
ATOM 16 N7 G A 6 7.925 -5.273 35.559 1.00 36.62 N
ATOM 17 C5 G A 6 7.683 -4.466 36.664 1.00 41.39 C
ATOM 18 C6 G A 6 8.573 -3.671 37.426 1.00 38.43 C
ATOM 19 O6 G A 6 9.792 -3.516 37.269 1.00 41.02 O
ATOM 20 N1 G A 6 7.916 -3.011 38.462 1.00 33.25 N
ATOM 21 C2 G A 6 6.571 -3.109 38.729 1.00 27.96 C
ATOM 22 N2 G A 6 6.121 -2.398 39.772 1.00 24.49 N
ATOM 23 N3 G A 6 5.726 -3.850 38.023 1.00 28.96 N
ATOM 24 C4 G A 6 6.351 -4.499 37.010 1.00 35.54 C
ATOM 25 P G A 7 2.249 -4.249 31.977 1.00 32.53 P
ATOM 26 OP1 G A 7 2.653 -2.973 32.607 1.00 39.43 O
ATOM 27 OP2 G A 7 0.966 -4.336 31.244 1.00 42.27 O
ATOM 28 O5' G A 7 3.414 -4.727 30.990 1.00 37.16 O
TER
ATOM 1 O3' A B 39 -4.730 -5.717 40.887 1.00 38.36 O
ATOM 2 P A B 40 -4.912 -4.382 40.027 1.00 41.99 P
ATOM 3 OP1 A B 40 -6.355 -4.058 39.991 1.00 50.17 O
ATOM 4 OP2 A B 40 -4.156 -4.543 38.765 1.00 40.11 O
ATOM 5 O5' A B 40 -4.156 -3.287 40.914 1.00 40.02 O
ATOM 6 C5' A B 40 -4.586 -3.029 42.243 1.00 40.55 C
ATOM 7 C4' A B 40 -3.557 -2.190 42.976 1.00 36.38 C
ATOM 8 O4' A B 40 -2.379 -2.991 43.249 1.00 37.43 O
ATOM 9 C3' A B 40 -3.030 -1.001 42.188 1.00 36.19 C
ATOM 10 O3' A B 40 -3.899 0.118 42.311 1.00 42.39 O
ATOM 11 C2' A B 40 -1.694 -0.768 42.884 1.00 35.11 C
ATOM 12 O2' A B 40 -1.844 -0.142 44.143 1.00 38.92 O
ATOM 13 C1' A B 40 -1.216 -2.205 43.058 1.00 36.90 C
ATOM 14 N9 A B 40 -0.493 -2.712 41.895 1.00 35.98 N
ATOM 15 C8 A B 40 -1.018 -3.368 40.817 1.00 34.15 C
ATOM 16 N7 A B 40 -0.126 -3.707 39.917 1.00 34.99 N
ATOM 17 C5 A B 40 1.068 -3.239 40.440 1.00 35.71 C
ATOM 18 C6 A B 40 2.395 -3.283 39.966 1.00 39.20 C
ATOM 19 N6 A B 40 2.744 -3.846 38.805 1.00 41.32 N
ATOM 20 N1 A B 40 3.352 -2.722 40.734 1.00 34.74 N
ATOM 21 C2 A B 40 2.999 -2.159 41.896 1.00 31.36 C
ATOM 22 N3 A B 40 1.789 -2.058 42.445 1.00 37.62 N
ATOM 23 C4 A B 40 0.860 -2.623 41.659 1.00 36.36 C
ATOM 24 P C B 41 -3.771 1.314 41.256 1.00 54.33 P
ATOM 25 OP1 C B 41 -4.721 2.379 41.647 1.00 54.43 O
ATOM 26 OP2 C B 41 -3.824 0.737 39.894 1.00 54.33 O
ATOM 27 O5' C B 41 -2.278 1.821 41.522 1.00 53.10 O
TER
ATOM 2 P G A 6 5.556 -9.166 31.994 1.00 39.19 P
ATOM 3 OP1 G A 6 4.580 -9.534 30.946 1.00 51.11 O
ATOM 4 OP2 G A 6 6.924 -8.755 31.611 1.00 47.55 O
ATOM 5 O5' G A 6 4.928 -8.014 32.910 1.00 44.31 O
ATOM 6 C5' G A 6 3.653 -8.208 33.509 1.00 41.65 C
ATOM 7 C4' G A 6 3.307 -7.068 34.450 1.00 38.95 C
ATOM 8 O4' G A 6 4.234 -7.038 35.562 1.00 36.12 O
ATOM 9 C3' G A 6 3.411 -5.674 33.853 1.00 39.85 C
ATOM 10 O3' G A 6 2.234 -5.374 33.116 1.00 41.08 O
ATOM 11 C2' G A 6 3.518 -4.820 35.111 1.00 35.97 C
ATOM 12 O2' G A 6 2.254 -4.556 35.688 1.00 29.87 O
ATOM 13 C1' G A 6 4.342 -5.709 36.041 1.00 34.79 C
ATOM 14 N9 G A 6 5.754 -5.343 36.100 1.00 35.95 N
ATOM 15 C8 G A 6 6.756 -5.769 35.263 1.00 39.57 C
ATOM 16 N7 G A 6 7.925 -5.273 35.559 1.00 36.62 N
ATOM 17 C5 G A 6 7.683 -4.466 36.664 1.00 41.39 C
ATOM 18 C6 G A 6 8.573 -3.671 37.426 1.00 38.43 C
ATOM 19 O6 G A 6 9.792 -3.516 37.269 1.00 41.02 O
ATOM 20 N1 G A 6 7.916 -3.011 38.462 1.00 33.25 N
ATOM 21 C2 G A 6 6.571 -3.109 38.729 1.00 27.96 C
ATOM 22 N2 G A 6 6.121 -2.398 39.772 1.00 24.49 N
ATOM 23 N3 G A 6 5.726 -3.850 38.023 1.00 28.96 N
ATOM 24 C4 G A 6 6.351 -4.499 37.010 1.00 35.54 C
ATOM 25 P G A 7 2.249 -4.249 31.977 1.00 32.53 P
ATOM 26 OP1 G A 7 2.653 -2.973 32.607 1.00 39.43 O
ATOM 27 OP2 G A 7 0.966 -4.336 31.244 1.00 42.27 O
ATOM 28 O5' G A 7 3.414 -4.727 30.990 1.00 37.16 O
TER
ATOM 1 O3' A B 39 -4.730 -5.717 40.887 1.00 38.36 O
ATOM 2 P A B 40 -4.912 -4.382 40.027 1.00 41.99 P
ATOM 3 OP1 A B 40 -6.355 -4.058 39.991 1.00 50.17 O
ATOM 4 OP2 A B 40 -4.156 -4.543 38.765 1.00 40.11 O
ATOM 5 O5' A B 40 -4.156 -3.287 40.914 1.00 40.02 O
ATOM 6 C5' A B 40 -4.586 -3.029 42.243 1.00 40.55 C
ATOM 7 C4' A B 40 -3.557 -2.190 42.976 1.00 36.38 C
ATOM 8 O4' A B 40 -2.379 -2.991 43.249 1.00 37.43 O
ATOM 9 C3' A B 40 -3.030 -1.001 42.188 1.00 36.19 C
ATOM 10 O3' A B 40 -3.899 0.118 42.311 1.00 42.39 O
ATOM 11 C2' A B 40 -1.694 -0.768 42.884 1.00 35.11 C
ATOM 12 O2' A B 40 -1.844 -0.142 44.143 1.00 38.92 O
ATOM 13 C1' A B 40 -1.216 -2.205 43.058 1.00 36.90 C
ATOM 14 N9 A B 40 -0.493 -2.712 41.895 1.00 35.98 N
ATOM 15 C8 A B 40 -1.018 -3.368 40.817 1.00 34.15 C
ATOM 16 N7 A B 40 -0.126 -3.707 39.917 1.00 34.99 N
ATOM 17 C5 A B 40 1.068 -3.239 40.440 1.00 35.71 C
ATOM 18 C6 A B 40 2.395 -3.283 39.966 1.00 39.20 C
ATOM 19 N6 A B 40 2.744 -3.846 38.805 1.00 41.32 N
ATOM 20 N1 A B 40 3.352 -2.722 40.734 1.00 34.74 N
ATOM 21 C2 A B 40 2.999 -2.159 41.896 1.00 31.36 C
ATOM 22 N3 A B 40 1.789 -2.058 42.445 1.00 37.62 N
ATOM 23 C4 A B 40 0.860 -2.623 41.659 1.00 36.36 C
ATOM 24 P C B 41 -3.771 1.314 41.256 1.00 54.33 P
ATOM 25 OP1 C B 41 -4.721 2.379 41.647 1.00 54.43 O
ATOM 26 OP2 C B 41 -3.824 0.737 39.894 1.00 54.33 O
ATOM 27 O5' C B 41 -2.278 1.821 41.522 1.00 53.10 O
TER
Atoms:
OP1: (4.580,-9.534,30.946)
OP2: (6.924,-8.755,31.611)
C3': (3.411,-5.674,33.853)
C1': (4.342,-5.709,36.041)
C5': (3.653,-8.208,33.509)
O6: (9.792,-3.516,37.269)
O4': (4.234,-7.038,35.562)
C8: (6.756,-5.769,35.263)
C2: (6.571,-3.109,38.729)
C6: (8.573,-3.671,37.426)
C5: (7.683,-4.466,36.664)
C4: (6.351,-4.499,37.010)
P: (5.556,-9.166,31.994)
C4': (3.307,-7.068,34.450)
C2': (3.518,-4.820,35.111)
O2': (2.254,-4.556,35.688)
N1: (7.916,-3.011,38.462)
N2: (6.121,-2.398,39.772)
N3: (5.726,-3.850,38.023)
N7: (7.925,-5.273,35.559)
N9: (5.754,-5.343,36.100)
O5': (4.928,-8.014,32.910)
O3': (2.234,-5.374,33.116)
OP2: (6.924,-8.755,31.611)
C3': (3.411,-5.674,33.853)
C1': (4.342,-5.709,36.041)
C5': (3.653,-8.208,33.509)
O6: (9.792,-3.516,37.269)
O4': (4.234,-7.038,35.562)
C8: (6.756,-5.769,35.263)
C2: (6.571,-3.109,38.729)
C6: (8.573,-3.671,37.426)
C5: (7.683,-4.466,36.664)
C4: (6.351,-4.499,37.010)
P: (5.556,-9.166,31.994)
C4': (3.307,-7.068,34.450)
C2': (3.518,-4.820,35.111)
O2': (2.254,-4.556,35.688)
N1: (7.916,-3.011,38.462)
N2: (6.121,-2.398,39.772)
N3: (5.726,-3.850,38.023)
N7: (7.925,-5.273,35.559)
N9: (5.754,-5.343,36.100)
O5': (4.928,-8.014,32.910)
O3': (2.234,-5.374,33.116)
OP1: (-6.355,-4.058,39.991)
OP2: (-4.156,-4.543,38.765)
C3': (-3.030,-1.001,42.188)
C1': (-1.216,-2.205,43.058)
C5': (-4.586,-3.029,42.243)
O4': (-2.379,-2.991,43.249)
C8: (-1.018,-3.368,40.817)
O2': (-1.844,-0.142,44.143)
C6: (2.395,-3.283,39.966)
C5: (1.068,-3.239,40.440)
C4: (0.860,-2.623,41.659)
P: (-4.912,-4.382,40.027)
C4': (-3.557,-2.190,42.976)
C2': (-1.694,-0.768,42.884)
C2: (2.999,-2.159,41.896)
N1: (3.352,-2.722,40.734)
N3: (1.789,-2.058,42.445)
N6: (2.744,-3.846,38.805)
N7: (-0.126,-3.707,39.917)
N9: (-0.493,-2.712,41.895)
O5': (-4.156,-3.287,40.914)
O3': (-3.899,0.118,42.311)
OP2: (-4.156,-4.543,38.765)
C3': (-3.030,-1.001,42.188)
C1': (-1.216,-2.205,43.058)
C5': (-4.586,-3.029,42.243)
O4': (-2.379,-2.991,43.249)
C8: (-1.018,-3.368,40.817)
O2': (-1.844,-0.142,44.143)
C6: (2.395,-3.283,39.966)
C5: (1.068,-3.239,40.440)
C4: (0.860,-2.623,41.659)
P: (-4.912,-4.382,40.027)
C4': (-3.557,-2.190,42.976)
C2': (-1.694,-0.768,42.884)
C2: (2.999,-2.159,41.896)
N1: (3.352,-2.722,40.734)
N3: (1.789,-2.058,42.445)
N6: (2.744,-3.846,38.805)
N7: (-0.126,-3.707,39.917)
N9: (-0.493,-2.712,41.895)
O5': (-4.156,-3.287,40.914)
O3': (-3.899,0.118,42.311)
Image (generated by PyMOL):