Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3G9Y:C2:C4
Extra
PDB:
ATOM 1 O3' G A 1 -10.987 33.508 10.881 1.00 28.52 O
ATOM 2 P G A 2 -11.259 34.025 12.362 1.00 29.49 P
ATOM 3 OP1 G A 2 -11.149 32.851 13.265 1.00 30.80 O
ATOM 4 OP2 G A 2 -12.472 34.883 12.363 1.00 30.34 O
ATOM 5 O5' G A 2 -10.011 34.999 12.561 1.00 27.33 O
ATOM 6 C5' G A 2 -8.692 34.468 12.587 1.00 25.08 C
ATOM 7 C4' G A 2 -7.912 35.185 13.662 1.00 23.44 C
ATOM 8 O4' G A 2 -7.973 36.607 13.387 1.00 23.53 O
ATOM 9 C3' G A 2 -8.474 35.019 15.071 1.00 22.20 C
ATOM 10 O3' G A 2 -7.424 34.994 15.998 1.00 24.03 O
ATOM 11 C2' G A 2 -9.292 36.293 15.267 1.00 21.23 C
ATOM 12 O2' G A 2 -9.512 36.641 16.625 1.00 22.41 O
ATOM 13 C1' G A 2 -8.352 37.267 14.570 1.00 23.81 C
ATOM 14 N9 G A 2 -8.912 38.571 14.217 1.00 23.88 N
ATOM 15 C8 G A 2 -10.223 38.946 14.019 1.00 23.77 C
ATOM 16 N7 G A 2 -10.357 40.213 13.715 1.00 23.52 N
ATOM 17 C5 G A 2 -9.058 40.702 13.707 1.00 22.90 C
ATOM 18 C6 G A 2 -8.555 41.996 13.448 1.00 23.70 C
ATOM 19 O6 G A 2 -9.170 43.019 13.137 1.00 22.68 O
ATOM 20 N1 G A 2 -7.174 42.051 13.561 1.00 23.02 N
ATOM 21 C2 G A 2 -6.358 40.988 13.879 1.00 24.24 C
ATOM 22 N2 G A 2 -5.046 41.231 13.957 1.00 24.43 N
ATOM 23 N3 G A 2 -6.807 39.766 14.118 1.00 24.47 N
ATOM 24 C4 G A 2 -8.159 39.699 14.011 1.00 23.99 C
ATOM 25 P U A 3 -6.924 33.657 16.713 1.00 28.63 P
ATOM 26 OP1 U A 3 -6.462 32.729 15.647 1.00 30.65 O
ATOM 27 OP2 U A 3 -7.866 33.116 17.710 1.00 27.54 O
ATOM 28 O5' U A 3 -5.676 34.343 17.457 1.00 29.07 O
TER
ATOM 1 O3' U B 3 -2.129 35.518 19.457 1.00 32.66 O
ATOM 2 P A B 4 -1.004 34.382 19.464 0.50 37.56 P
ATOM 3 OP1 A B 4 -1.000 33.691 18.159 0.50 37.51 O
ATOM 4 OP2 A B 4 -1.193 33.622 20.725 0.50 37.59 O
ATOM 5 O5' A B 4 0.341 35.244 19.598 0.50 37.23 O
ATOM 6 C5' A B 4 0.612 36.395 18.785 0.50 37.65 C
ATOM 7 C4' A B 4 1.484 36.006 17.607 0.50 37.70 C
ATOM 8 O4' A B 4 0.725 35.016 16.877 0.50 37.14 O
ATOM 9 C3' A B 4 1.826 37.076 16.567 0.50 38.20 C
ATOM 10 O3' A B 4 3.033 37.782 16.833 0.50 40.23 O
ATOM 11 C2' A B 4 1.993 36.229 15.320 0.50 37.13 C
ATOM 12 O2' A B 4 3.195 35.490 15.314 0.50 38.38 O
ATOM 13 C1' A B 4 0.811 35.302 15.495 0.50 36.09 C
ATOM 14 N9 A B 4 -0.464 35.837 15.039 0.50 33.20 N
ATOM 15 C8 A B 4 -1.330 35.065 14.333 0.50 32.74 C
ATOM 16 N7 A B 4 -2.428 35.672 13.993 0.50 31.77 N
ATOM 17 C5 A B 4 -2.273 36.939 14.508 0.50 29.23 C
ATOM 18 C6 A B 4 -3.152 38.022 14.447 0.50 27.85 C
ATOM 19 N6 A B 4 -4.321 37.915 13.822 0.50 26.65 N
ATOM 20 N1 A B 4 -2.776 39.159 15.042 0.50 26.44 N
ATOM 21 C2 A B 4 -1.580 39.190 15.650 0.50 27.52 C
ATOM 22 N3 A B 4 -0.666 38.219 15.773 0.50 27.90 N
ATOM 23 C4 A B 4 -1.076 37.087 15.170 0.50 30.52 C
ATOM 24 P A B 5 3.750 38.634 15.674 0.50 41.61 P
ATOM 25 OP1 A B 5 4.761 37.786 15.003 0.50 41.62 O
ATOM 26 OP2 A B 5 4.173 39.917 16.287 0.50 42.35 O
ATOM 27 O5' A B 5 2.604 38.928 14.592 0.50 39.35 O
TER
ATOM 2 P G A 2 -11.259 34.025 12.362 1.00 29.49 P
ATOM 3 OP1 G A 2 -11.149 32.851 13.265 1.00 30.80 O
ATOM 4 OP2 G A 2 -12.472 34.883 12.363 1.00 30.34 O
ATOM 5 O5' G A 2 -10.011 34.999 12.561 1.00 27.33 O
ATOM 6 C5' G A 2 -8.692 34.468 12.587 1.00 25.08 C
ATOM 7 C4' G A 2 -7.912 35.185 13.662 1.00 23.44 C
ATOM 8 O4' G A 2 -7.973 36.607 13.387 1.00 23.53 O
ATOM 9 C3' G A 2 -8.474 35.019 15.071 1.00 22.20 C
ATOM 10 O3' G A 2 -7.424 34.994 15.998 1.00 24.03 O
ATOM 11 C2' G A 2 -9.292 36.293 15.267 1.00 21.23 C
ATOM 12 O2' G A 2 -9.512 36.641 16.625 1.00 22.41 O
ATOM 13 C1' G A 2 -8.352 37.267 14.570 1.00 23.81 C
ATOM 14 N9 G A 2 -8.912 38.571 14.217 1.00 23.88 N
ATOM 15 C8 G A 2 -10.223 38.946 14.019 1.00 23.77 C
ATOM 16 N7 G A 2 -10.357 40.213 13.715 1.00 23.52 N
ATOM 17 C5 G A 2 -9.058 40.702 13.707 1.00 22.90 C
ATOM 18 C6 G A 2 -8.555 41.996 13.448 1.00 23.70 C
ATOM 19 O6 G A 2 -9.170 43.019 13.137 1.00 22.68 O
ATOM 20 N1 G A 2 -7.174 42.051 13.561 1.00 23.02 N
ATOM 21 C2 G A 2 -6.358 40.988 13.879 1.00 24.24 C
ATOM 22 N2 G A 2 -5.046 41.231 13.957 1.00 24.43 N
ATOM 23 N3 G A 2 -6.807 39.766 14.118 1.00 24.47 N
ATOM 24 C4 G A 2 -8.159 39.699 14.011 1.00 23.99 C
ATOM 25 P U A 3 -6.924 33.657 16.713 1.00 28.63 P
ATOM 26 OP1 U A 3 -6.462 32.729 15.647 1.00 30.65 O
ATOM 27 OP2 U A 3 -7.866 33.116 17.710 1.00 27.54 O
ATOM 28 O5' U A 3 -5.676 34.343 17.457 1.00 29.07 O
TER
ATOM 1 O3' U B 3 -2.129 35.518 19.457 1.00 32.66 O
ATOM 2 P A B 4 -1.004 34.382 19.464 0.50 37.56 P
ATOM 3 OP1 A B 4 -1.000 33.691 18.159 0.50 37.51 O
ATOM 4 OP2 A B 4 -1.193 33.622 20.725 0.50 37.59 O
ATOM 5 O5' A B 4 0.341 35.244 19.598 0.50 37.23 O
ATOM 6 C5' A B 4 0.612 36.395 18.785 0.50 37.65 C
ATOM 7 C4' A B 4 1.484 36.006 17.607 0.50 37.70 C
ATOM 8 O4' A B 4 0.725 35.016 16.877 0.50 37.14 O
ATOM 9 C3' A B 4 1.826 37.076 16.567 0.50 38.20 C
ATOM 10 O3' A B 4 3.033 37.782 16.833 0.50 40.23 O
ATOM 11 C2' A B 4 1.993 36.229 15.320 0.50 37.13 C
ATOM 12 O2' A B 4 3.195 35.490 15.314 0.50 38.38 O
ATOM 13 C1' A B 4 0.811 35.302 15.495 0.50 36.09 C
ATOM 14 N9 A B 4 -0.464 35.837 15.039 0.50 33.20 N
ATOM 15 C8 A B 4 -1.330 35.065 14.333 0.50 32.74 C
ATOM 16 N7 A B 4 -2.428 35.672 13.993 0.50 31.77 N
ATOM 17 C5 A B 4 -2.273 36.939 14.508 0.50 29.23 C
ATOM 18 C6 A B 4 -3.152 38.022 14.447 0.50 27.85 C
ATOM 19 N6 A B 4 -4.321 37.915 13.822 0.50 26.65 N
ATOM 20 N1 A B 4 -2.776 39.159 15.042 0.50 26.44 N
ATOM 21 C2 A B 4 -1.580 39.190 15.650 0.50 27.52 C
ATOM 22 N3 A B 4 -0.666 38.219 15.773 0.50 27.90 N
ATOM 23 C4 A B 4 -1.076 37.087 15.170 0.50 30.52 C
ATOM 24 P A B 5 3.750 38.634 15.674 0.50 41.61 P
ATOM 25 OP1 A B 5 4.761 37.786 15.003 0.50 41.62 O
ATOM 26 OP2 A B 5 4.173 39.917 16.287 0.50 42.35 O
ATOM 27 O5' A B 5 2.604 38.928 14.592 0.50 39.35 O
TER
Atoms:
OP1: (-11.149,32.851,13.265)
OP2: (-12.472,34.883,12.363)
C3': (-8.474,35.019,15.071)
C1': (-8.352,37.267,14.570)
C5': (-8.692,34.468,12.587)
O6: (-9.170,43.019,13.137)
O4': (-7.973,36.607,13.387)
C8: (-10.223,38.946,14.019)
C2: (-6.358,40.988,13.879)
C6: (-8.555,41.996,13.448)
C5: (-9.058,40.702,13.707)
C4: (-8.159,39.699,14.011)
P: (-11.259,34.025,12.362)
C4': (-7.912,35.185,13.662)
C2': (-9.292,36.293,15.267)
O2': (-9.512,36.641,16.625)
N1: (-7.174,42.051,13.561)
N2: (-5.046,41.231,13.957)
N3: (-6.807,39.766,14.118)
N7: (-10.357,40.213,13.715)
N9: (-8.912,38.571,14.217)
O5': (-10.011,34.999,12.561)
O3': (-7.424,34.994,15.998)
OP2: (-12.472,34.883,12.363)
C3': (-8.474,35.019,15.071)
C1': (-8.352,37.267,14.570)
C5': (-8.692,34.468,12.587)
O6: (-9.170,43.019,13.137)
O4': (-7.973,36.607,13.387)
C8: (-10.223,38.946,14.019)
C2: (-6.358,40.988,13.879)
C6: (-8.555,41.996,13.448)
C5: (-9.058,40.702,13.707)
C4: (-8.159,39.699,14.011)
P: (-11.259,34.025,12.362)
C4': (-7.912,35.185,13.662)
C2': (-9.292,36.293,15.267)
O2': (-9.512,36.641,16.625)
N1: (-7.174,42.051,13.561)
N2: (-5.046,41.231,13.957)
N3: (-6.807,39.766,14.118)
N7: (-10.357,40.213,13.715)
N9: (-8.912,38.571,14.217)
O5': (-10.011,34.999,12.561)
O3': (-7.424,34.994,15.998)
OP1: (-1.000,33.691,18.159)
OP2: (-1.193,33.622,20.725)
C3': (1.826,37.076,16.567)
C1': (0.811,35.302,15.495)
C5': (0.612,36.395,18.785)
O4': (0.725,35.016,16.877)
C8: (-1.330,35.065,14.333)
O2': (3.195,35.490,15.314)
C6: (-3.152,38.022,14.447)
C5: (-2.273,36.939,14.508)
C4: (-1.076,37.087,15.170)
P: (-1.004,34.382,19.464)
C4': (1.484,36.006,17.607)
C2': (1.993,36.229,15.320)
C2: (-1.580,39.190,15.650)
N1: (-2.776,39.159,15.042)
N3: (-0.666,38.219,15.773)
N6: (-4.321,37.915,13.822)
N7: (-2.428,35.672,13.993)
N9: (-0.464,35.837,15.039)
O5': (0.341,35.244,19.598)
O3': (3.033,37.782,16.833)
OP2: (-1.193,33.622,20.725)
C3': (1.826,37.076,16.567)
C1': (0.811,35.302,15.495)
C5': (0.612,36.395,18.785)
O4': (0.725,35.016,16.877)
C8: (-1.330,35.065,14.333)
O2': (3.195,35.490,15.314)
C6: (-3.152,38.022,14.447)
C5: (-2.273,36.939,14.508)
C4: (-1.076,37.087,15.170)
P: (-1.004,34.382,19.464)
C4': (1.484,36.006,17.607)
C2': (1.993,36.229,15.320)
C2: (-1.580,39.190,15.650)
N1: (-2.776,39.159,15.042)
N3: (-0.666,38.219,15.773)
N6: (-4.321,37.915,13.822)
N7: (-2.428,35.672,13.993)
N9: (-0.464,35.837,15.039)
O5': (0.341,35.244,19.598)
O3': (3.033,37.782,16.833)
Image (generated by PyMOL):