Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2016:A617
Extra
PDB:
ATOM 1 O3' U A2015 42.500 108.906 110.324 1.00 31.43 O
ATOM 2 P G A2016 43.703 108.274 109.483 1.00 30.95 P
ATOM 3 OP1 G A2016 43.300 106.867 109.299 1.00 31.12 O
ATOM 4 OP2 G A2016 44.976 108.591 110.171 1.00 30.85 O
ATOM 5 O5' G A2016 43.641 109.041 108.089 1.00 29.71 O
ATOM 6 C5' G A2016 42.630 108.716 107.096 1.00 27.88 C
ATOM 7 C4' G A2016 42.744 109.640 105.906 1.00 26.93 C
ATOM 8 O4' G A2016 42.577 111.011 106.338 1.00 27.33 O
ATOM 9 C3' G A2016 44.103 109.589 105.244 1.00 25.97 C
ATOM 10 O3' G A2016 44.059 108.539 104.279 1.00 27.36 O
ATOM 11 C2' G A2016 44.242 110.982 104.641 1.00 25.80 C
ATOM 12 O2' G A2016 43.600 111.081 103.389 1.00 26.26 O
ATOM 13 C1' G A2016 43.485 111.841 105.654 1.00 27.07 C
ATOM 14 N9 G A2016 44.387 112.450 106.624 1.00 28.68 N
ATOM 15 C8 G A2016 44.862 111.903 107.795 1.00 29.06 C
ATOM 16 N7 G A2016 45.748 112.654 108.385 1.00 29.14 N
ATOM 17 C5 G A2016 45.842 113.773 107.564 1.00 27.98 C
ATOM 18 C6 G A2016 46.655 114.907 107.665 1.00 28.60 C
ATOM 19 O6 G A2016 47.518 115.144 108.510 1.00 32.65 O
ATOM 20 N1 G A2016 46.410 115.817 106.630 1.00 25.21 N
ATOM 21 C2 G A2016 45.512 115.630 105.619 1.00 24.10 C
ATOM 22 N2 G A2016 45.406 116.607 104.721 1.00 26.67 N
ATOM 23 N3 G A2016 44.768 114.558 105.498 1.00 25.18 N
ATOM 24 C4 G A2016 44.982 113.675 106.498 1.00 27.23 C
ATOM 25 P C A2017 45.300 107.543 104.117 1.00 28.39 P
ATOM 26 OP1 C A2017 44.944 106.467 103.192 1.00 27.89 O
ATOM 27 OP2 C A2017 45.818 107.221 105.456 1.00 28.40 O
ATOM 28 O5' C A2017 46.378 108.419 103.383 1.00 26.97 O
TER
ATOM 1 O3' A B 616 41.175 112.966 95.587 1.00 30.19 O
ATOM 2 P A B 617 39.599 112.882 95.901 1.00 28.17 P
ATOM 3 OP1 A B 617 39.330 111.755 96.809 1.00 27.86 O
ATOM 4 OP2 A B 617 38.863 112.989 94.636 1.00 26.52 O
ATOM 5 O5' A B 617 39.286 114.225 96.689 1.00 27.94 O
ATOM 6 C5' A B 617 38.714 115.367 96.012 1.00 29.07 C
ATOM 7 C4' A B 617 39.209 116.622 96.647 1.00 30.49 C
ATOM 8 O4' A B 617 38.940 116.485 98.061 1.00 32.16 O
ATOM 9 C3' A B 617 40.717 116.803 96.564 1.00 30.73 C
ATOM 10 O3' A B 617 41.134 117.488 95.380 1.00 29.48 O
ATOM 11 C2' A B 617 41.021 117.610 97.811 1.00 32.22 C
ATOM 12 O2' A B 617 40.713 118.968 97.609 1.00 34.18 O
ATOM 13 C1' A B 617 40.007 117.041 98.807 1.00 32.23 C
ATOM 14 N9 A B 617 40.503 116.058 99.786 1.00 32.20 N
ATOM 15 C8 A B 617 40.127 114.759 99.942 1.00 32.63 C
ATOM 16 N7 A B 617 40.759 114.137 100.899 1.00 31.49 N
ATOM 17 C5 A B 617 41.612 115.092 101.412 1.00 31.22 C
ATOM 18 C6 A B 617 42.564 115.054 102.438 1.00 31.88 C
ATOM 19 N6 A B 617 42.854 113.956 103.145 1.00 33.13 N
ATOM 20 N1 A B 617 43.228 116.188 102.710 1.00 30.28 N
ATOM 21 C2 A B 617 42.963 117.270 101.983 1.00 31.36 C
ATOM 22 N3 A B 617 42.112 117.423 100.989 1.00 33.03 N
ATOM 23 C4 A B 617 41.458 116.282 100.748 1.00 31.32 C
ATOM 24 P A B 618 42.458 117.012 94.622 1.00 30.04 P
ATOM 25 OP1 A B 618 42.751 117.906 93.477 1.00 29.35 O
ATOM 26 OP2 A B 618 42.224 115.584 94.370 1.00 31.25 O
ATOM 27 O5' A B 618 43.596 117.204 95.726 1.00 31.14 O
TER
ATOM 2 P G A2016 43.703 108.274 109.483 1.00 30.95 P
ATOM 3 OP1 G A2016 43.300 106.867 109.299 1.00 31.12 O
ATOM 4 OP2 G A2016 44.976 108.591 110.171 1.00 30.85 O
ATOM 5 O5' G A2016 43.641 109.041 108.089 1.00 29.71 O
ATOM 6 C5' G A2016 42.630 108.716 107.096 1.00 27.88 C
ATOM 7 C4' G A2016 42.744 109.640 105.906 1.00 26.93 C
ATOM 8 O4' G A2016 42.577 111.011 106.338 1.00 27.33 O
ATOM 9 C3' G A2016 44.103 109.589 105.244 1.00 25.97 C
ATOM 10 O3' G A2016 44.059 108.539 104.279 1.00 27.36 O
ATOM 11 C2' G A2016 44.242 110.982 104.641 1.00 25.80 C
ATOM 12 O2' G A2016 43.600 111.081 103.389 1.00 26.26 O
ATOM 13 C1' G A2016 43.485 111.841 105.654 1.00 27.07 C
ATOM 14 N9 G A2016 44.387 112.450 106.624 1.00 28.68 N
ATOM 15 C8 G A2016 44.862 111.903 107.795 1.00 29.06 C
ATOM 16 N7 G A2016 45.748 112.654 108.385 1.00 29.14 N
ATOM 17 C5 G A2016 45.842 113.773 107.564 1.00 27.98 C
ATOM 18 C6 G A2016 46.655 114.907 107.665 1.00 28.60 C
ATOM 19 O6 G A2016 47.518 115.144 108.510 1.00 32.65 O
ATOM 20 N1 G A2016 46.410 115.817 106.630 1.00 25.21 N
ATOM 21 C2 G A2016 45.512 115.630 105.619 1.00 24.10 C
ATOM 22 N2 G A2016 45.406 116.607 104.721 1.00 26.67 N
ATOM 23 N3 G A2016 44.768 114.558 105.498 1.00 25.18 N
ATOM 24 C4 G A2016 44.982 113.675 106.498 1.00 27.23 C
ATOM 25 P C A2017 45.300 107.543 104.117 1.00 28.39 P
ATOM 26 OP1 C A2017 44.944 106.467 103.192 1.00 27.89 O
ATOM 27 OP2 C A2017 45.818 107.221 105.456 1.00 28.40 O
ATOM 28 O5' C A2017 46.378 108.419 103.383 1.00 26.97 O
TER
ATOM 1 O3' A B 616 41.175 112.966 95.587 1.00 30.19 O
ATOM 2 P A B 617 39.599 112.882 95.901 1.00 28.17 P
ATOM 3 OP1 A B 617 39.330 111.755 96.809 1.00 27.86 O
ATOM 4 OP2 A B 617 38.863 112.989 94.636 1.00 26.52 O
ATOM 5 O5' A B 617 39.286 114.225 96.689 1.00 27.94 O
ATOM 6 C5' A B 617 38.714 115.367 96.012 1.00 29.07 C
ATOM 7 C4' A B 617 39.209 116.622 96.647 1.00 30.49 C
ATOM 8 O4' A B 617 38.940 116.485 98.061 1.00 32.16 O
ATOM 9 C3' A B 617 40.717 116.803 96.564 1.00 30.73 C
ATOM 10 O3' A B 617 41.134 117.488 95.380 1.00 29.48 O
ATOM 11 C2' A B 617 41.021 117.610 97.811 1.00 32.22 C
ATOM 12 O2' A B 617 40.713 118.968 97.609 1.00 34.18 O
ATOM 13 C1' A B 617 40.007 117.041 98.807 1.00 32.23 C
ATOM 14 N9 A B 617 40.503 116.058 99.786 1.00 32.20 N
ATOM 15 C8 A B 617 40.127 114.759 99.942 1.00 32.63 C
ATOM 16 N7 A B 617 40.759 114.137 100.899 1.00 31.49 N
ATOM 17 C5 A B 617 41.612 115.092 101.412 1.00 31.22 C
ATOM 18 C6 A B 617 42.564 115.054 102.438 1.00 31.88 C
ATOM 19 N6 A B 617 42.854 113.956 103.145 1.00 33.13 N
ATOM 20 N1 A B 617 43.228 116.188 102.710 1.00 30.28 N
ATOM 21 C2 A B 617 42.963 117.270 101.983 1.00 31.36 C
ATOM 22 N3 A B 617 42.112 117.423 100.989 1.00 33.03 N
ATOM 23 C4 A B 617 41.458 116.282 100.748 1.00 31.32 C
ATOM 24 P A B 618 42.458 117.012 94.622 1.00 30.04 P
ATOM 25 OP1 A B 618 42.751 117.906 93.477 1.00 29.35 O
ATOM 26 OP2 A B 618 42.224 115.584 94.370 1.00 31.25 O
ATOM 27 O5' A B 618 43.596 117.204 95.726 1.00 31.14 O
TER
Atoms:
OP1: (43.300,106.867,109.299)
OP2: (44.976,108.591,110.171)
C3': (44.103,109.589,105.244)
C1': (43.485,111.841,105.654)
C5': (42.630,108.716,107.096)
O6: (47.518,115.144,108.510)
O4': (42.577,111.011,106.338)
C8: (44.862,111.903,107.795)
C2: (45.512,115.630,105.619)
C6: (46.655,114.907,107.665)
C5: (45.842,113.773,107.564)
C4: (44.982,113.675,106.498)
P: (43.703,108.274,109.483)
C4': (42.744,109.640,105.906)
C2': (44.242,110.982,104.641)
O2': (43.600,111.081,103.389)
N1: (46.410,115.817,106.630)
N2: (45.406,116.607,104.721)
N3: (44.768,114.558,105.498)
N7: (45.748,112.654,108.385)
N9: (44.387,112.450,106.624)
O5': (43.641,109.041,108.089)
O3': (44.059,108.539,104.279)
OP2: (44.976,108.591,110.171)
C3': (44.103,109.589,105.244)
C1': (43.485,111.841,105.654)
C5': (42.630,108.716,107.096)
O6: (47.518,115.144,108.510)
O4': (42.577,111.011,106.338)
C8: (44.862,111.903,107.795)
C2: (45.512,115.630,105.619)
C6: (46.655,114.907,107.665)
C5: (45.842,113.773,107.564)
C4: (44.982,113.675,106.498)
P: (43.703,108.274,109.483)
C4': (42.744,109.640,105.906)
C2': (44.242,110.982,104.641)
O2': (43.600,111.081,103.389)
N1: (46.410,115.817,106.630)
N2: (45.406,116.607,104.721)
N3: (44.768,114.558,105.498)
N7: (45.748,112.654,108.385)
N9: (44.387,112.450,106.624)
O5': (43.641,109.041,108.089)
O3': (44.059,108.539,104.279)
OP1: (39.330,111.755,96.809)
OP2: (38.863,112.989,94.636)
C3': (40.717,116.803,96.564)
C1': (40.007,117.041,98.807)
C5': (38.714,115.367,96.012)
O4': (38.940,116.485,98.061)
C8: (40.127,114.759,99.942)
O2': (40.713,118.968,97.609)
C6: (42.564,115.054,102.438)
C5: (41.612,115.092,101.412)
C4: (41.458,116.282,100.748)
P: (39.599,112.882,95.901)
C4': (39.209,116.622,96.647)
C2': (41.021,117.610,97.811)
C2: (42.963,117.270,101.983)
N1: (43.228,116.188,102.710)
N3: (42.112,117.423,100.989)
N6: (42.854,113.956,103.145)
N7: (40.759,114.137,100.899)
N9: (40.503,116.058,99.786)
O5': (39.286,114.225,96.689)
O3': (41.134,117.488,95.380)
OP2: (38.863,112.989,94.636)
C3': (40.717,116.803,96.564)
C1': (40.007,117.041,98.807)
C5': (38.714,115.367,96.012)
O4': (38.940,116.485,98.061)
C8: (40.127,114.759,99.942)
O2': (40.713,118.968,97.609)
C6: (42.564,115.054,102.438)
C5: (41.612,115.092,101.412)
C4: (41.458,116.282,100.748)
P: (39.599,112.882,95.901)
C4': (39.209,116.622,96.647)
C2': (41.021,117.610,97.811)
C2: (42.963,117.270,101.983)
N1: (43.228,116.188,102.710)
N3: (42.112,117.423,100.989)
N6: (42.854,113.956,103.145)
N7: (40.759,114.137,100.899)
N9: (40.503,116.058,99.786)
O5': (39.286,114.225,96.689)
O3': (41.134,117.488,95.380)
Image (generated by PyMOL):