Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:A31:A8
Extra
PDB:
ATOM 1 O3' G A 30 27.281 -25.251 -24.437 1.00 52.31 O
ATOM 2 P G A 31 27.220 -25.848 -22.947 1.00 60.31 P
ATOM 3 OP1 G A 31 28.609 -25.870 -22.427 1.00 53.75 O
ATOM 4 OP2 G A 31 26.462 -27.124 -23.015 1.00 58.31 O
ATOM 5 O5' G A 31 26.369 -24.757 -22.167 1.00 47.97 O
ATOM 6 C5' G A 31 26.826 -23.417 -22.054 1.00 52.29 C
ATOM 7 C4' G A 31 26.049 -22.670 -21.006 1.00 49.51 C
ATOM 8 O4' G A 31 24.776 -22.235 -21.555 1.00 48.43 O
ATOM 9 C3' G A 31 25.671 -23.477 -19.777 1.00 47.06 C
ATOM 10 O3' G A 31 26.721 -23.556 -18.831 1.00 50.35 O
ATOM 11 C2' G A 31 24.431 -22.758 -19.267 1.00 45.24 C
ATOM 12 O2' G A 31 24.788 -21.576 -18.565 1.00 44.11 O
ATOM 13 C1' G A 31 23.762 -22.356 -20.582 1.00 42.67 C
ATOM 14 N9 G A 31 22.800 -23.373 -21.047 1.00 45.06 N
ATOM 15 C8 G A 31 23.100 -24.572 -21.645 1.00 44.80 C
ATOM 16 N7 G A 31 22.043 -25.268 -21.961 1.00 44.65 N
ATOM 17 C5 G A 31 20.977 -24.481 -21.554 1.00 40.35 C
ATOM 18 C6 G A 31 19.580 -24.711 -21.637 1.00 39.93 C
ATOM 19 O6 G A 31 18.980 -25.689 -22.100 1.00 38.09 O
ATOM 20 N1 G A 31 18.863 -23.646 -21.102 1.00 39.09 N
ATOM 21 C2 G A 31 19.411 -22.510 -20.560 1.00 39.08 C
ATOM 22 N2 G A 31 18.549 -21.595 -20.096 1.00 41.94 N
ATOM 23 N3 G A 31 20.711 -22.285 -20.478 1.00 42.39 N
ATOM 24 C4 G A 31 21.428 -23.304 -20.992 1.00 43.00 C
ATOM 25 P U A 32 26.938 -24.897 -17.977 1.00 51.36 P
ATOM 26 OP1 U A 32 28.219 -24.746 -17.246 1.00 57.69 O
ATOM 27 OP2 U A 32 26.777 -26.041 -18.906 1.00 50.03 O
ATOM 28 O5' U A 32 25.725 -24.859 -16.952 1.00 54.72 O
TER
ATOM 1 O3' U B 7 19.966 -18.129 -12.438 1.00 51.72 O
ATOM 2 P A B 8 20.165 -16.948 -11.366 1.00 55.29 P
ATOM 3 OP1 A B 8 21.465 -17.183 -10.694 1.00 52.35 O
ATOM 4 OP2 A B 8 18.935 -16.896 -10.539 1.00 47.84 O
ATOM 5 O5' A B 8 20.254 -15.652 -12.285 1.00 53.59 O
ATOM 6 C5' A B 8 19.322 -15.445 -13.337 1.00 48.63 C
ATOM 7 C4' A B 8 19.852 -14.483 -14.373 1.00 49.41 C
ATOM 8 O4' A B 8 21.160 -14.917 -14.821 1.00 50.60 O
ATOM 9 C3' A B 8 19.036 -14.366 -15.655 1.00 50.57 C
ATOM 10 O3' A B 8 17.932 -13.484 -15.528 1.00 61.39 O
ATOM 11 C2' A B 8 20.069 -13.898 -16.677 1.00 47.45 C
ATOM 12 O2' A B 8 20.248 -12.491 -16.600 1.00 47.53 O
ATOM 13 C1' A B 8 21.346 -14.578 -16.177 1.00 50.12 C
ATOM 14 N9 A B 8 21.670 -15.805 -16.934 1.00 50.56 N
ATOM 15 C8 A B 8 22.928 -16.226 -17.287 1.00 49.47 C
ATOM 16 N7 A B 8 22.952 -17.354 -17.949 1.00 49.25 N
ATOM 17 C5 A B 8 21.614 -17.710 -18.040 1.00 47.33 C
ATOM 18 C6 A B 8 20.972 -18.814 -18.629 1.00 41.08 C
ATOM 19 N6 A B 8 21.616 -19.797 -19.263 1.00 38.79 N
ATOM 20 N1 A B 8 19.627 -18.875 -18.546 1.00 46.36 N
ATOM 21 C2 A B 8 18.981 -17.889 -17.910 1.00 47.05 C
ATOM 22 N3 A B 8 19.472 -16.803 -17.318 1.00 48.23 N
ATOM 23 C4 A B 8 20.812 -16.768 -17.416 1.00 47.68 C
ATOM 24 P A B 9 16.481 -14.036 -15.101 1.00 56.57 P
ATOM 25 OP1 A B 9 15.668 -12.862 -14.706 1.00 40.22 O
ATOM 26 OP2 A B 9 16.695 -15.118 -14.111 1.00 60.97 O
ATOM 27 O5' A B 9 15.917 -14.651 -16.458 1.00 51.90 O
TER
ATOM 2 P G A 31 27.220 -25.848 -22.947 1.00 60.31 P
ATOM 3 OP1 G A 31 28.609 -25.870 -22.427 1.00 53.75 O
ATOM 4 OP2 G A 31 26.462 -27.124 -23.015 1.00 58.31 O
ATOM 5 O5' G A 31 26.369 -24.757 -22.167 1.00 47.97 O
ATOM 6 C5' G A 31 26.826 -23.417 -22.054 1.00 52.29 C
ATOM 7 C4' G A 31 26.049 -22.670 -21.006 1.00 49.51 C
ATOM 8 O4' G A 31 24.776 -22.235 -21.555 1.00 48.43 O
ATOM 9 C3' G A 31 25.671 -23.477 -19.777 1.00 47.06 C
ATOM 10 O3' G A 31 26.721 -23.556 -18.831 1.00 50.35 O
ATOM 11 C2' G A 31 24.431 -22.758 -19.267 1.00 45.24 C
ATOM 12 O2' G A 31 24.788 -21.576 -18.565 1.00 44.11 O
ATOM 13 C1' G A 31 23.762 -22.356 -20.582 1.00 42.67 C
ATOM 14 N9 G A 31 22.800 -23.373 -21.047 1.00 45.06 N
ATOM 15 C8 G A 31 23.100 -24.572 -21.645 1.00 44.80 C
ATOM 16 N7 G A 31 22.043 -25.268 -21.961 1.00 44.65 N
ATOM 17 C5 G A 31 20.977 -24.481 -21.554 1.00 40.35 C
ATOM 18 C6 G A 31 19.580 -24.711 -21.637 1.00 39.93 C
ATOM 19 O6 G A 31 18.980 -25.689 -22.100 1.00 38.09 O
ATOM 20 N1 G A 31 18.863 -23.646 -21.102 1.00 39.09 N
ATOM 21 C2 G A 31 19.411 -22.510 -20.560 1.00 39.08 C
ATOM 22 N2 G A 31 18.549 -21.595 -20.096 1.00 41.94 N
ATOM 23 N3 G A 31 20.711 -22.285 -20.478 1.00 42.39 N
ATOM 24 C4 G A 31 21.428 -23.304 -20.992 1.00 43.00 C
ATOM 25 P U A 32 26.938 -24.897 -17.977 1.00 51.36 P
ATOM 26 OP1 U A 32 28.219 -24.746 -17.246 1.00 57.69 O
ATOM 27 OP2 U A 32 26.777 -26.041 -18.906 1.00 50.03 O
ATOM 28 O5' U A 32 25.725 -24.859 -16.952 1.00 54.72 O
TER
ATOM 1 O3' U B 7 19.966 -18.129 -12.438 1.00 51.72 O
ATOM 2 P A B 8 20.165 -16.948 -11.366 1.00 55.29 P
ATOM 3 OP1 A B 8 21.465 -17.183 -10.694 1.00 52.35 O
ATOM 4 OP2 A B 8 18.935 -16.896 -10.539 1.00 47.84 O
ATOM 5 O5' A B 8 20.254 -15.652 -12.285 1.00 53.59 O
ATOM 6 C5' A B 8 19.322 -15.445 -13.337 1.00 48.63 C
ATOM 7 C4' A B 8 19.852 -14.483 -14.373 1.00 49.41 C
ATOM 8 O4' A B 8 21.160 -14.917 -14.821 1.00 50.60 O
ATOM 9 C3' A B 8 19.036 -14.366 -15.655 1.00 50.57 C
ATOM 10 O3' A B 8 17.932 -13.484 -15.528 1.00 61.39 O
ATOM 11 C2' A B 8 20.069 -13.898 -16.677 1.00 47.45 C
ATOM 12 O2' A B 8 20.248 -12.491 -16.600 1.00 47.53 O
ATOM 13 C1' A B 8 21.346 -14.578 -16.177 1.00 50.12 C
ATOM 14 N9 A B 8 21.670 -15.805 -16.934 1.00 50.56 N
ATOM 15 C8 A B 8 22.928 -16.226 -17.287 1.00 49.47 C
ATOM 16 N7 A B 8 22.952 -17.354 -17.949 1.00 49.25 N
ATOM 17 C5 A B 8 21.614 -17.710 -18.040 1.00 47.33 C
ATOM 18 C6 A B 8 20.972 -18.814 -18.629 1.00 41.08 C
ATOM 19 N6 A B 8 21.616 -19.797 -19.263 1.00 38.79 N
ATOM 20 N1 A B 8 19.627 -18.875 -18.546 1.00 46.36 N
ATOM 21 C2 A B 8 18.981 -17.889 -17.910 1.00 47.05 C
ATOM 22 N3 A B 8 19.472 -16.803 -17.318 1.00 48.23 N
ATOM 23 C4 A B 8 20.812 -16.768 -17.416 1.00 47.68 C
ATOM 24 P A B 9 16.481 -14.036 -15.101 1.00 56.57 P
ATOM 25 OP1 A B 9 15.668 -12.862 -14.706 1.00 40.22 O
ATOM 26 OP2 A B 9 16.695 -15.118 -14.111 1.00 60.97 O
ATOM 27 O5' A B 9 15.917 -14.651 -16.458 1.00 51.90 O
TER
Atoms:
OP1: (28.609,-25.870,-22.427)
OP2: (26.462,-27.124,-23.015)
C3': (25.671,-23.477,-19.777)
C1': (23.762,-22.356,-20.582)
C5': (26.826,-23.417,-22.054)
O6: (18.980,-25.689,-22.100)
O4': (24.776,-22.235,-21.555)
C8: (23.100,-24.572,-21.645)
C2: (19.411,-22.510,-20.560)
C6: (19.580,-24.711,-21.637)
C5: (20.977,-24.481,-21.554)
C4: (21.428,-23.304,-20.992)
P: (27.220,-25.848,-22.947)
C4': (26.049,-22.670,-21.006)
C2': (24.431,-22.758,-19.267)
O2': (24.788,-21.576,-18.565)
N1: (18.863,-23.646,-21.102)
N2: (18.549,-21.595,-20.096)
N3: (20.711,-22.285,-20.478)
N7: (22.043,-25.268,-21.961)
N9: (22.800,-23.373,-21.047)
O5': (26.369,-24.757,-22.167)
O3': (26.721,-23.556,-18.831)
OP2: (26.462,-27.124,-23.015)
C3': (25.671,-23.477,-19.777)
C1': (23.762,-22.356,-20.582)
C5': (26.826,-23.417,-22.054)
O6: (18.980,-25.689,-22.100)
O4': (24.776,-22.235,-21.555)
C8: (23.100,-24.572,-21.645)
C2: (19.411,-22.510,-20.560)
C6: (19.580,-24.711,-21.637)
C5: (20.977,-24.481,-21.554)
C4: (21.428,-23.304,-20.992)
P: (27.220,-25.848,-22.947)
C4': (26.049,-22.670,-21.006)
C2': (24.431,-22.758,-19.267)
O2': (24.788,-21.576,-18.565)
N1: (18.863,-23.646,-21.102)
N2: (18.549,-21.595,-20.096)
N3: (20.711,-22.285,-20.478)
N7: (22.043,-25.268,-21.961)
N9: (22.800,-23.373,-21.047)
O5': (26.369,-24.757,-22.167)
O3': (26.721,-23.556,-18.831)
OP1: (21.465,-17.183,-10.694)
OP2: (18.935,-16.896,-10.539)
C3': (19.036,-14.366,-15.655)
C1': (21.346,-14.578,-16.177)
C5': (19.322,-15.445,-13.337)
O4': (21.160,-14.917,-14.821)
C8: (22.928,-16.226,-17.287)
O2': (20.248,-12.491,-16.600)
C6: (20.972,-18.814,-18.629)
C5: (21.614,-17.710,-18.040)
C4: (20.812,-16.768,-17.416)
P: (20.165,-16.948,-11.366)
C4': (19.852,-14.483,-14.373)
C2': (20.069,-13.898,-16.677)
C2: (18.981,-17.889,-17.910)
N1: (19.627,-18.875,-18.546)
N3: (19.472,-16.803,-17.318)
N6: (21.616,-19.797,-19.263)
N7: (22.952,-17.354,-17.949)
N9: (21.670,-15.805,-16.934)
O5': (20.254,-15.652,-12.285)
O3': (17.932,-13.484,-15.528)
OP2: (18.935,-16.896,-10.539)
C3': (19.036,-14.366,-15.655)
C1': (21.346,-14.578,-16.177)
C5': (19.322,-15.445,-13.337)
O4': (21.160,-14.917,-14.821)
C8: (22.928,-16.226,-17.287)
O2': (20.248,-12.491,-16.600)
C6: (20.972,-18.814,-18.629)
C5: (21.614,-17.710,-18.040)
C4: (20.812,-16.768,-17.416)
P: (20.165,-16.948,-11.366)
C4': (19.852,-14.483,-14.373)
C2': (20.069,-13.898,-16.677)
C2: (18.981,-17.889,-17.910)
N1: (19.627,-18.875,-18.546)
N3: (19.472,-16.803,-17.318)
N6: (21.616,-19.797,-19.263)
N7: (22.952,-17.354,-17.949)
N9: (21.670,-15.805,-16.934)
O5': (20.254,-15.652,-12.285)
O3': (17.932,-13.484,-15.528)
Image (generated by PyMOL):