Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1300:168
Extra
PDB:
ATOM 1 O3' U A 299 46.495 -53.252 113.015 1.00 42.84 O
ATOM 2 P G A 300 45.888 -53.920 111.693 1.00 48.63 P
ATOM 3 OP1 G A 300 46.114 -52.978 110.590 1.00 48.09 O
ATOM 4 OP2 G A 300 44.507 -54.323 112.005 1.00 48.74 O
ATOM 5 O5' G A 300 46.789 -55.192 111.493 1.00 48.98 O
ATOM 6 C5' G A 300 47.973 -55.099 110.739 1.00 48.83 C
ATOM 7 C4' G A 300 48.685 -56.396 110.737 1.00 49.25 C
ATOM 8 O4' G A 300 48.553 -57.005 112.033 1.00 49.78 O
ATOM 9 C3' G A 300 48.118 -57.454 109.822 1.00 49.26 C
ATOM 10 O3' G A 300 48.439 -57.257 108.471 1.00 48.87 O
ATOM 11 C2' G A 300 48.674 -58.731 110.396 1.00 49.84 C
ATOM 12 O2' G A 300 49.961 -58.970 109.877 1.00 49.88 O
ATOM 13 C1' G A 300 48.794 -58.380 111.895 1.00 50.16 C
ATOM 14 N9 G A 300 47.843 -59.127 112.722 1.00 50.54 N
ATOM 15 C8 G A 300 46.619 -58.736 113.155 1.00 50.46 C
ATOM 16 N7 G A 300 46.050 -59.676 113.868 1.00 50.91 N
ATOM 17 C5 G A 300 46.961 -60.727 113.884 1.00 51.30 C
ATOM 18 C6 G A 300 46.904 -62.003 114.490 1.00 51.88 C
ATOM 19 O6 G A 300 45.982 -62.475 115.152 1.00 52.16 O
ATOM 20 N1 G A 300 48.051 -62.752 114.272 1.00 52.15 N
ATOM 21 C2 G A 300 49.121 -62.337 113.543 1.00 51.89 C
ATOM 22 N2 G A 300 50.121 -63.209 113.428 1.00 52.22 N
ATOM 23 N3 G A 300 49.202 -61.146 112.987 1.00 51.35 N
ATOM 24 C4 G A 300 48.081 -60.401 113.185 1.00 51.09 C
ATOM 25 P G A 301 47.286 -57.401 107.381 1.00 48.84 P
ATOM 26 OP1 G A 301 46.669 -58.696 107.602 1.00 49.24 O
ATOM 27 OP2 G A 301 47.876 -57.126 106.092 1.00 48.48 O
ATOM 28 O5' G A 301 46.243 -56.266 107.773 1.00 48.54 O
TER
ATOM 1 O3' A B 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 2 P A B 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 3 OP1 A B 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 4 OP2 A B 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 5 O5' A B 68 58.254 -60.615 106.858 1.00 51.61 O
ATOM 6 C5' A B 68 59.314 -61.229 107.587 1.00 52.13 C
ATOM 7 C4' A B 68 58.902 -62.565 108.103 1.00 52.64 C
ATOM 8 O4' A B 68 58.034 -62.352 109.248 1.00 52.77 O
ATOM 9 C3' A B 68 58.096 -63.390 107.096 1.00 52.56 C
ATOM 10 O3' A B 68 58.372 -64.776 107.254 1.00 53.10 O
ATOM 11 C2' A B 68 56.663 -63.116 107.505 1.00 52.40 C
ATOM 12 O2' A B 68 55.753 -64.135 107.173 1.00 52.56 O
ATOM 13 C1' A B 68 56.780 -62.965 109.013 1.00 52.76 C
ATOM 14 N9 A B 68 55.708 -62.145 109.562 1.00 52.52 N
ATOM 15 C8 A B 68 55.318 -60.909 109.153 1.00 51.97 C
ATOM 16 N7 A B 68 54.240 -60.466 109.751 1.00 51.88 N
ATOM 17 C5 A B 68 53.866 -61.486 110.567 1.00 52.38 C
ATOM 18 C6 A B 68 52.780 -61.643 111.447 1.00 52.57 C
ATOM 19 N6 A B 68 51.829 -60.737 111.678 1.00 52.25 N
ATOM 20 N1 A B 68 52.699 -62.806 112.123 1.00 53.13 N
ATOM 21 C2 A B 68 53.647 -63.724 111.891 1.00 53.46 C
ATOM 22 N3 A B 68 54.701 -63.699 111.062 1.00 53.33 N
ATOM 23 C4 A B 68 54.749 -62.535 110.425 1.00 52.78 C
ATOM 24 P C B 69 59.383 -65.520 106.266 1.00 52.67 P
ATOM 25 OP1 C B 69 59.225 -64.920 104.896 1.00 52.10 O
ATOM 26 OP2 C B 69 59.171 -66.967 106.449 1.00 53.20 O
ATOM 27 O5' C B 69 60.788 -65.094 106.854 1.00 52.85 O
TER
ATOM 2 P G A 300 45.888 -53.920 111.693 1.00 48.63 P
ATOM 3 OP1 G A 300 46.114 -52.978 110.590 1.00 48.09 O
ATOM 4 OP2 G A 300 44.507 -54.323 112.005 1.00 48.74 O
ATOM 5 O5' G A 300 46.789 -55.192 111.493 1.00 48.98 O
ATOM 6 C5' G A 300 47.973 -55.099 110.739 1.00 48.83 C
ATOM 7 C4' G A 300 48.685 -56.396 110.737 1.00 49.25 C
ATOM 8 O4' G A 300 48.553 -57.005 112.033 1.00 49.78 O
ATOM 9 C3' G A 300 48.118 -57.454 109.822 1.00 49.26 C
ATOM 10 O3' G A 300 48.439 -57.257 108.471 1.00 48.87 O
ATOM 11 C2' G A 300 48.674 -58.731 110.396 1.00 49.84 C
ATOM 12 O2' G A 300 49.961 -58.970 109.877 1.00 49.88 O
ATOM 13 C1' G A 300 48.794 -58.380 111.895 1.00 50.16 C
ATOM 14 N9 G A 300 47.843 -59.127 112.722 1.00 50.54 N
ATOM 15 C8 G A 300 46.619 -58.736 113.155 1.00 50.46 C
ATOM 16 N7 G A 300 46.050 -59.676 113.868 1.00 50.91 N
ATOM 17 C5 G A 300 46.961 -60.727 113.884 1.00 51.30 C
ATOM 18 C6 G A 300 46.904 -62.003 114.490 1.00 51.88 C
ATOM 19 O6 G A 300 45.982 -62.475 115.152 1.00 52.16 O
ATOM 20 N1 G A 300 48.051 -62.752 114.272 1.00 52.15 N
ATOM 21 C2 G A 300 49.121 -62.337 113.543 1.00 51.89 C
ATOM 22 N2 G A 300 50.121 -63.209 113.428 1.00 52.22 N
ATOM 23 N3 G A 300 49.202 -61.146 112.987 1.00 51.35 N
ATOM 24 C4 G A 300 48.081 -60.401 113.185 1.00 51.09 C
ATOM 25 P G A 301 47.286 -57.401 107.381 1.00 48.84 P
ATOM 26 OP1 G A 301 46.669 -58.696 107.602 1.00 49.24 O
ATOM 27 OP2 G A 301 47.876 -57.126 106.092 1.00 48.48 O
ATOM 28 O5' G A 301 46.243 -56.266 107.773 1.00 48.54 O
TER
ATOM 1 O3' A B 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 2 P A B 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 3 OP1 A B 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 4 OP2 A B 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 5 O5' A B 68 58.254 -60.615 106.858 1.00 51.61 O
ATOM 6 C5' A B 68 59.314 -61.229 107.587 1.00 52.13 C
ATOM 7 C4' A B 68 58.902 -62.565 108.103 1.00 52.64 C
ATOM 8 O4' A B 68 58.034 -62.352 109.248 1.00 52.77 O
ATOM 9 C3' A B 68 58.096 -63.390 107.096 1.00 52.56 C
ATOM 10 O3' A B 68 58.372 -64.776 107.254 1.00 53.10 O
ATOM 11 C2' A B 68 56.663 -63.116 107.505 1.00 52.40 C
ATOM 12 O2' A B 68 55.753 -64.135 107.173 1.00 52.56 O
ATOM 13 C1' A B 68 56.780 -62.965 109.013 1.00 52.76 C
ATOM 14 N9 A B 68 55.708 -62.145 109.562 1.00 52.52 N
ATOM 15 C8 A B 68 55.318 -60.909 109.153 1.00 51.97 C
ATOM 16 N7 A B 68 54.240 -60.466 109.751 1.00 51.88 N
ATOM 17 C5 A B 68 53.866 -61.486 110.567 1.00 52.38 C
ATOM 18 C6 A B 68 52.780 -61.643 111.447 1.00 52.57 C
ATOM 19 N6 A B 68 51.829 -60.737 111.678 1.00 52.25 N
ATOM 20 N1 A B 68 52.699 -62.806 112.123 1.00 53.13 N
ATOM 21 C2 A B 68 53.647 -63.724 111.891 1.00 53.46 C
ATOM 22 N3 A B 68 54.701 -63.699 111.062 1.00 53.33 N
ATOM 23 C4 A B 68 54.749 -62.535 110.425 1.00 52.78 C
ATOM 24 P C B 69 59.383 -65.520 106.266 1.00 52.67 P
ATOM 25 OP1 C B 69 59.225 -64.920 104.896 1.00 52.10 O
ATOM 26 OP2 C B 69 59.171 -66.967 106.449 1.00 53.20 O
ATOM 27 O5' C B 69 60.788 -65.094 106.854 1.00 52.85 O
TER
Atoms:
OP1: (46.114,-52.978,110.590)
OP2: (44.507,-54.323,112.005)
C3': (48.118,-57.454,109.822)
C1': (48.794,-58.380,111.895)
C5': (47.973,-55.099,110.739)
O6: (45.982,-62.475,115.152)
O4': (48.553,-57.005,112.033)
C8: (46.619,-58.736,113.155)
C2: (49.121,-62.337,113.543)
C6: (46.904,-62.003,114.490)
C5: (46.961,-60.727,113.884)
C4: (48.081,-60.401,113.185)
P: (45.888,-53.920,111.693)
C4': (48.685,-56.396,110.737)
C2': (48.674,-58.731,110.396)
O2': (49.961,-58.970,109.877)
N1: (48.051,-62.752,114.272)
N2: (50.121,-63.209,113.428)
N3: (49.202,-61.146,112.987)
N7: (46.050,-59.676,113.868)
N9: (47.843,-59.127,112.722)
O5': (46.789,-55.192,111.493)
O3': (48.439,-57.257,108.471)
OP2: (44.507,-54.323,112.005)
C3': (48.118,-57.454,109.822)
C1': (48.794,-58.380,111.895)
C5': (47.973,-55.099,110.739)
O6: (45.982,-62.475,115.152)
O4': (48.553,-57.005,112.033)
C8: (46.619,-58.736,113.155)
C2: (49.121,-62.337,113.543)
C6: (46.904,-62.003,114.490)
C5: (46.961,-60.727,113.884)
C4: (48.081,-60.401,113.185)
P: (45.888,-53.920,111.693)
C4': (48.685,-56.396,110.737)
C2': (48.674,-58.731,110.396)
O2': (49.961,-58.970,109.877)
N1: (48.051,-62.752,114.272)
N2: (50.121,-63.209,113.428)
N3: (49.202,-61.146,112.987)
N7: (46.050,-59.676,113.868)
N9: (47.843,-59.127,112.722)
O5': (46.789,-55.192,111.493)
O3': (48.439,-57.257,108.471)
OP1: (59.515,-59.206,105.207)
OP2: (57.155,-58.601,105.873)
C3': (58.096,-63.390,107.096)
C1': (56.780,-62.965,109.013)
C5': (59.314,-61.229,107.587)
O4': (58.034,-62.352,109.248)
C8: (55.318,-60.909,109.153)
O2': (55.753,-64.135,107.173)
C6: (52.780,-61.643,111.447)
C5: (53.866,-61.486,110.567)
C4: (54.749,-62.535,110.425)
P: (58.447,-59.179,106.227)
C4': (58.902,-62.565,108.103)
C2': (56.663,-63.116,107.505)
C2: (53.647,-63.724,111.891)
N1: (52.699,-62.806,112.123)
N3: (54.701,-63.699,111.062)
N6: (51.829,-60.737,111.678)
N7: (54.240,-60.466,109.751)
N9: (55.708,-62.145,109.562)
O5': (58.254,-60.615,106.858)
O3': (58.372,-64.776,107.254)
OP2: (57.155,-58.601,105.873)
C3': (58.096,-63.390,107.096)
C1': (56.780,-62.965,109.013)
C5': (59.314,-61.229,107.587)
O4': (58.034,-62.352,109.248)
C8: (55.318,-60.909,109.153)
O2': (55.753,-64.135,107.173)
C6: (52.780,-61.643,111.447)
C5: (53.866,-61.486,110.567)
C4: (54.749,-62.535,110.425)
P: (58.447,-59.179,106.227)
C4': (58.902,-62.565,108.103)
C2': (56.663,-63.116,107.505)
C2: (53.647,-63.724,111.891)
N1: (52.699,-62.806,112.123)
N3: (54.701,-63.699,111.062)
N6: (51.829,-60.737,111.678)
N7: (54.240,-60.466,109.751)
N9: (55.708,-62.145,109.562)
O5': (58.254,-60.615,106.858)
O3': (58.372,-64.776,107.254)
Image (generated by PyMOL):