Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DH3:H8:H11
Extra
PDB:
ATOM 1 O3' C A 7 3.331 -6.406 6.265 1.00 47.14 O
ATOM 2 P G A 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 3 OP1 G A 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 4 OP2 G A 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 5 O5' G A 8 2.372 -8.042 7.842 1.00 48.47 O
ATOM 6 C5' G A 8 2.448 -8.968 8.904 1.00 48.63 C
ATOM 7 C4' G A 8 2.862 -10.369 8.500 1.00 49.23 C
ATOM 8 O4' G A 8 3.532 -10.470 7.220 1.00 48.74 O
ATOM 9 C3' G A 8 3.888 -10.919 9.459 1.00 50.38 C
ATOM 10 O3' G A 8 3.295 -11.221 10.719 1.00 53.66 O
ATOM 11 C2' G A 8 4.370 -12.141 8.678 1.00 50.07 C
ATOM 12 O2' G A 8 3.512 -13.267 8.695 1.00 50.29 O
ATOM 13 C1' G A 8 4.427 -11.576 7.261 1.00 49.05 C
ATOM 14 N9 G A 8 5.784 -11.146 6.927 1.00 47.90 N
ATOM 15 C8 G A 8 6.185 -9.845 6.783 1.00 45.89 C
ATOM 16 N7 G A 8 7.436 -9.744 6.484 1.00 45.89 N
ATOM 17 C5 G A 8 7.913 -11.054 6.440 1.00 46.90 C
ATOM 18 C6 G A 8 9.221 -11.549 6.173 1.00 48.05 C
ATOM 19 O6 G A 8 10.257 -10.913 5.903 1.00 49.14 O
ATOM 20 N1 G A 8 9.297 -12.940 6.230 1.00 47.96 N
ATOM 21 C2 G A 8 8.242 -13.760 6.500 1.00 47.30 C
ATOM 22 N2 G A 8 8.583 -15.059 6.482 1.00 47.10 N
ATOM 23 N3 G A 8 6.996 -13.321 6.750 1.00 46.81 N
ATOM 24 C4 G A 8 6.905 -11.951 6.712 1.00 47.30 C
ATOM 25 P U A 9 3.556 -10.357 12.061 1.00 57.22 P
ATOM 26 OP1 U A 9 2.252 -9.977 12.685 1.00 55.78 O
ATOM 27 OP2 U A 9 4.513 -9.270 11.727 1.00 55.14 O
ATOM 28 O5' U A 9 4.242 -11.488 12.965 1.00 58.13 O
TER
ATOM 1 O3' G B 10 8.452 -19.977 11.918 1.00 64.63 O
ATOM 2 P A B 11 8.682 -21.479 11.363 1.00 64.09 P
ATOM 3 OP1 A B 11 8.121 -22.355 12.424 1.00 63.57 O
ATOM 4 OP2 A B 11 10.106 -21.624 10.905 1.00 62.72 O
ATOM 5 O5' A B 11 7.693 -21.553 10.088 1.00 60.81 O
ATOM 6 C5' A B 11 7.006 -22.718 9.610 1.00 57.80 C
ATOM 7 C4' A B 11 5.541 -22.435 9.232 1.00 56.36 C
ATOM 8 O4' A B 11 4.936 -21.263 9.848 1.00 55.72 O
ATOM 9 C3' A B 11 5.330 -22.124 7.777 1.00 55.05 C
ATOM 10 O3' A B 11 5.432 -23.327 7.124 1.00 55.09 O
ATOM 11 C2' A B 11 3.925 -21.535 7.721 1.00 55.05 C
ATOM 12 O2' A B 11 2.889 -22.477 7.526 1.00 55.95 O
ATOM 13 C1' A B 11 3.796 -20.879 9.093 1.00 54.84 C
ATOM 14 N9 A B 11 3.752 -19.424 8.973 1.00 54.49 N
ATOM 15 C8 A B 11 2.731 -18.565 9.305 1.00 54.46 C
ATOM 16 N7 A B 11 2.998 -17.294 9.061 1.00 54.50 N
ATOM 17 C5 A B 11 4.283 -17.321 8.530 1.00 54.64 C
ATOM 18 C6 A B 11 5.152 -16.305 8.065 1.00 54.22 C
ATOM 19 N6 A B 11 4.861 -15.001 8.050 1.00 52.72 N
ATOM 20 N1 A B 11 6.358 -16.699 7.602 1.00 55.23 N
ATOM 21 C2 A B 11 6.686 -18.007 7.600 1.00 54.96 C
ATOM 22 N3 A B 11 5.963 -19.049 8.010 1.00 54.83 N
ATOM 23 C4 A B 11 4.761 -18.630 8.469 1.00 54.79 C
ATOM 24 P G B 12 6.220 -23.373 5.737 1.00 57.57 P
ATOM 25 OP1 G B 12 6.788 -24.757 5.673 1.00 56.80 O
ATOM 26 OP2 G B 12 7.136 -22.188 5.724 1.00 57.10 O
ATOM 27 O5' G B 12 5.038 -23.190 4.616 1.00 55.70 O
TER
ATOM 2 P G A 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 3 OP1 G A 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 4 OP2 G A 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 5 O5' G A 8 2.372 -8.042 7.842 1.00 48.47 O
ATOM 6 C5' G A 8 2.448 -8.968 8.904 1.00 48.63 C
ATOM 7 C4' G A 8 2.862 -10.369 8.500 1.00 49.23 C
ATOM 8 O4' G A 8 3.532 -10.470 7.220 1.00 48.74 O
ATOM 9 C3' G A 8 3.888 -10.919 9.459 1.00 50.38 C
ATOM 10 O3' G A 8 3.295 -11.221 10.719 1.00 53.66 O
ATOM 11 C2' G A 8 4.370 -12.141 8.678 1.00 50.07 C
ATOM 12 O2' G A 8 3.512 -13.267 8.695 1.00 50.29 O
ATOM 13 C1' G A 8 4.427 -11.576 7.261 1.00 49.05 C
ATOM 14 N9 G A 8 5.784 -11.146 6.927 1.00 47.90 N
ATOM 15 C8 G A 8 6.185 -9.845 6.783 1.00 45.89 C
ATOM 16 N7 G A 8 7.436 -9.744 6.484 1.00 45.89 N
ATOM 17 C5 G A 8 7.913 -11.054 6.440 1.00 46.90 C
ATOM 18 C6 G A 8 9.221 -11.549 6.173 1.00 48.05 C
ATOM 19 O6 G A 8 10.257 -10.913 5.903 1.00 49.14 O
ATOM 20 N1 G A 8 9.297 -12.940 6.230 1.00 47.96 N
ATOM 21 C2 G A 8 8.242 -13.760 6.500 1.00 47.30 C
ATOM 22 N2 G A 8 8.583 -15.059 6.482 1.00 47.10 N
ATOM 23 N3 G A 8 6.996 -13.321 6.750 1.00 46.81 N
ATOM 24 C4 G A 8 6.905 -11.951 6.712 1.00 47.30 C
ATOM 25 P U A 9 3.556 -10.357 12.061 1.00 57.22 P
ATOM 26 OP1 U A 9 2.252 -9.977 12.685 1.00 55.78 O
ATOM 27 OP2 U A 9 4.513 -9.270 11.727 1.00 55.14 O
ATOM 28 O5' U A 9 4.242 -11.488 12.965 1.00 58.13 O
TER
ATOM 1 O3' G B 10 8.452 -19.977 11.918 1.00 64.63 O
ATOM 2 P A B 11 8.682 -21.479 11.363 1.00 64.09 P
ATOM 3 OP1 A B 11 8.121 -22.355 12.424 1.00 63.57 O
ATOM 4 OP2 A B 11 10.106 -21.624 10.905 1.00 62.72 O
ATOM 5 O5' A B 11 7.693 -21.553 10.088 1.00 60.81 O
ATOM 6 C5' A B 11 7.006 -22.718 9.610 1.00 57.80 C
ATOM 7 C4' A B 11 5.541 -22.435 9.232 1.00 56.36 C
ATOM 8 O4' A B 11 4.936 -21.263 9.848 1.00 55.72 O
ATOM 9 C3' A B 11 5.330 -22.124 7.777 1.00 55.05 C
ATOM 10 O3' A B 11 5.432 -23.327 7.124 1.00 55.09 O
ATOM 11 C2' A B 11 3.925 -21.535 7.721 1.00 55.05 C
ATOM 12 O2' A B 11 2.889 -22.477 7.526 1.00 55.95 O
ATOM 13 C1' A B 11 3.796 -20.879 9.093 1.00 54.84 C
ATOM 14 N9 A B 11 3.752 -19.424 8.973 1.00 54.49 N
ATOM 15 C8 A B 11 2.731 -18.565 9.305 1.00 54.46 C
ATOM 16 N7 A B 11 2.998 -17.294 9.061 1.00 54.50 N
ATOM 17 C5 A B 11 4.283 -17.321 8.530 1.00 54.64 C
ATOM 18 C6 A B 11 5.152 -16.305 8.065 1.00 54.22 C
ATOM 19 N6 A B 11 4.861 -15.001 8.050 1.00 52.72 N
ATOM 20 N1 A B 11 6.358 -16.699 7.602 1.00 55.23 N
ATOM 21 C2 A B 11 6.686 -18.007 7.600 1.00 54.96 C
ATOM 22 N3 A B 11 5.963 -19.049 8.010 1.00 54.83 N
ATOM 23 C4 A B 11 4.761 -18.630 8.469 1.00 54.79 C
ATOM 24 P G B 12 6.220 -23.373 5.737 1.00 57.57 P
ATOM 25 OP1 G B 12 6.788 -24.757 5.673 1.00 56.80 O
ATOM 26 OP2 G B 12 7.136 -22.188 5.724 1.00 57.10 O
ATOM 27 O5' G B 12 5.038 -23.190 4.616 1.00 55.70 O
TER
Atoms:
OP1: (3.330,-5.809,8.649)
OP2: (4.812,-7.780,7.862)
C3': (3.888,-10.919,9.459)
C1': (4.427,-11.576,7.261)
C5': (2.448,-8.968,8.904)
O6: (10.257,-10.913,5.903)
O4': (3.532,-10.470,7.220)
C8: (6.185,-9.845,6.783)
C2: (8.242,-13.760,6.500)
C6: (9.221,-11.549,6.173)
C5: (7.913,-11.054,6.440)
C4: (6.905,-11.951,6.712)
P: (3.562,-6.970,7.750)
C4': (2.862,-10.369,8.500)
C2': (4.370,-12.141,8.678)
O2': (3.512,-13.267,8.695)
N1: (9.297,-12.940,6.230)
N2: (8.583,-15.059,6.482)
N3: (6.996,-13.321,6.750)
N7: (7.436,-9.744,6.484)
N9: (5.784,-11.146,6.927)
O5': (2.372,-8.042,7.842)
O3': (3.295,-11.221,10.719)
OP2: (4.812,-7.780,7.862)
C3': (3.888,-10.919,9.459)
C1': (4.427,-11.576,7.261)
C5': (2.448,-8.968,8.904)
O6: (10.257,-10.913,5.903)
O4': (3.532,-10.470,7.220)
C8: (6.185,-9.845,6.783)
C2: (8.242,-13.760,6.500)
C6: (9.221,-11.549,6.173)
C5: (7.913,-11.054,6.440)
C4: (6.905,-11.951,6.712)
P: (3.562,-6.970,7.750)
C4': (2.862,-10.369,8.500)
C2': (4.370,-12.141,8.678)
O2': (3.512,-13.267,8.695)
N1: (9.297,-12.940,6.230)
N2: (8.583,-15.059,6.482)
N3: (6.996,-13.321,6.750)
N7: (7.436,-9.744,6.484)
N9: (5.784,-11.146,6.927)
O5': (2.372,-8.042,7.842)
O3': (3.295,-11.221,10.719)
OP1: (8.121,-22.355,12.424)
OP2: (10.106,-21.624,10.905)
C3': (5.330,-22.124,7.777)
C1': (3.796,-20.879,9.093)
C5': (7.006,-22.718,9.610)
O4': (4.936,-21.263,9.848)
C8: (2.731,-18.565,9.305)
O2': (2.889,-22.477,7.526)
C6: (5.152,-16.305,8.065)
C5: (4.283,-17.321,8.530)
C4: (4.761,-18.630,8.469)
P: (8.682,-21.479,11.363)
C4': (5.541,-22.435,9.232)
C2': (3.925,-21.535,7.721)
C2: (6.686,-18.007,7.600)
N1: (6.358,-16.699,7.602)
N3: (5.963,-19.049,8.010)
N6: (4.861,-15.001,8.050)
N7: (2.998,-17.294,9.061)
N9: (3.752,-19.424,8.973)
O5': (7.693,-21.553,10.088)
O3': (5.432,-23.327,7.124)
OP2: (10.106,-21.624,10.905)
C3': (5.330,-22.124,7.777)
C1': (3.796,-20.879,9.093)
C5': (7.006,-22.718,9.610)
O4': (4.936,-21.263,9.848)
C8: (2.731,-18.565,9.305)
O2': (2.889,-22.477,7.526)
C6: (5.152,-16.305,8.065)
C5: (4.283,-17.321,8.530)
C4: (4.761,-18.630,8.469)
P: (8.682,-21.479,11.363)
C4': (5.541,-22.435,9.232)
C2': (3.925,-21.535,7.721)
C2: (6.686,-18.007,7.600)
N1: (6.358,-16.699,7.602)
N3: (5.963,-19.049,8.010)
N6: (4.861,-15.001,8.050)
N7: (2.998,-17.294,9.061)
N9: (3.752,-19.424,8.973)
O5': (7.693,-21.553,10.088)
O3': (5.432,-23.327,7.124)
Image (generated by PyMOL):