Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A66:A22
Extra
PDB:
ATOM 1 O3' C A 65 -1.867 7.748 11.026 1.00 21.24 O
ATOM 2 P G A 66 -1.615 6.297 11.665 1.00 22.90 P
ATOM 3 OP1 G A 66 -0.263 6.317 12.273 1.00 18.42 O
ATOM 4 OP2 G A 66 -1.908 5.298 10.612 1.00 15.60 O
ATOM 5 O5' G A 66 -2.722 6.217 12.805 1.00 20.60 O
ATOM 6 C5' G A 66 -2.695 7.105 13.919 1.00 21.02 C
ATOM 7 C4' G A 66 -3.628 6.643 15.011 1.00 21.72 C
ATOM 8 O4' G A 66 -4.979 6.569 14.475 1.00 19.97 O
ATOM 9 C3' G A 66 -3.321 5.255 15.574 1.00 19.88 C
ATOM 10 O3' G A 66 -3.703 5.202 16.949 1.00 22.00 O
ATOM 11 C2' G A 66 -4.247 4.361 14.759 1.00 18.62 C
ATOM 12 O2' G A 66 -4.562 3.128 15.370 1.00 21.07 O
ATOM 13 C1' G A 66 -5.474 5.251 14.615 1.00 20.51 C
ATOM 14 N9 G A 66 -6.302 4.938 13.448 1.00 20.89 N
ATOM 15 C8 G A 66 -5.928 4.916 12.127 1.00 21.64 C
ATOM 16 N7 G A 66 -6.901 4.577 11.324 1.00 20.24 N
ATOM 17 C5 G A 66 -7.979 4.354 12.168 1.00 21.39 C
ATOM 18 C6 G A 66 -9.310 3.962 11.880 1.00 23.95 C
ATOM 19 O6 G A 66 -9.825 3.721 10.780 1.00 23.50 O
ATOM 20 N1 G A 66 -10.070 3.860 13.041 1.00 22.14 N
ATOM 21 C2 G A 66 -9.614 4.097 14.313 1.00 22.36 C
ATOM 22 N2 G A 66 -10.501 3.940 15.306 1.00 24.56 N
ATOM 23 N3 G A 66 -8.377 4.462 14.594 1.00 20.85 N
ATOM 24 C4 G A 66 -7.623 4.569 13.482 1.00 21.90 C
ATOM 25 P G A 67 -2.595 5.342 18.107 1.00 26.32 P
ATOM 26 OP1 G A 67 -3.298 5.197 19.403 1.00 28.16 O
ATOM 27 OP2 G A 67 -1.840 6.592 17.845 1.00 25.47 O
ATOM 28 O5' G A 67 -1.656 4.081 17.855 1.00 19.96 O
TER
ATOM 1 O3' A B 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 2 P A B 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 3 OP1 A B 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 4 OP2 A B 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 5 O5' A B 22 -11.448 7.683 25.347 1.00 33.18 O
ATOM 6 C5' A B 22 -12.816 7.401 25.598 1.00 29.21 C
ATOM 7 C4' A B 22 -13.415 6.521 24.526 1.00 28.74 C
ATOM 8 O4' A B 22 -13.299 7.166 23.230 1.00 29.36 O
ATOM 9 C3' A B 22 -12.755 5.169 24.306 1.00 25.92 C
ATOM 10 O3' A B 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 11 C2' A B 22 -13.223 4.816 22.903 1.00 31.00 C
ATOM 12 O2' A B 22 -14.577 4.392 22.918 1.00 33.59 O
ATOM 13 C1' A B 22 -13.158 6.182 22.223 1.00 28.74 C
ATOM 14 N9 A B 22 -11.871 6.387 21.532 1.00 28.30 N
ATOM 15 C8 A B 22 -10.820 7.198 21.880 1.00 28.39 C
ATOM 16 N7 A B 22 -9.813 7.138 21.039 1.00 27.28 N
ATOM 17 C5 A B 22 -10.227 6.224 20.077 1.00 27.06 C
ATOM 18 C6 A B 22 -9.619 5.719 18.911 1.00 25.94 C
ATOM 19 N6 A B 22 -8.404 6.079 18.493 1.00 25.54 N
ATOM 20 N1 A B 22 -10.308 4.818 18.174 1.00 24.17 N
ATOM 21 C2 A B 22 -11.527 4.455 18.589 1.00 23.60 C
ATOM 22 N3 A B 22 -12.203 4.858 19.665 1.00 26.30 N
ATOM 23 C4 A B 22 -11.492 5.753 20.373 1.00 26.39 C
ATOM 24 P G B 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 25 OP1 G B 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 26 OP2 G B 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 27 O5' G B 23 -11.454 2.492 24.506 1.00 25.90 O
TER
ATOM 2 P G A 66 -1.615 6.297 11.665 1.00 22.90 P
ATOM 3 OP1 G A 66 -0.263 6.317 12.273 1.00 18.42 O
ATOM 4 OP2 G A 66 -1.908 5.298 10.612 1.00 15.60 O
ATOM 5 O5' G A 66 -2.722 6.217 12.805 1.00 20.60 O
ATOM 6 C5' G A 66 -2.695 7.105 13.919 1.00 21.02 C
ATOM 7 C4' G A 66 -3.628 6.643 15.011 1.00 21.72 C
ATOM 8 O4' G A 66 -4.979 6.569 14.475 1.00 19.97 O
ATOM 9 C3' G A 66 -3.321 5.255 15.574 1.00 19.88 C
ATOM 10 O3' G A 66 -3.703 5.202 16.949 1.00 22.00 O
ATOM 11 C2' G A 66 -4.247 4.361 14.759 1.00 18.62 C
ATOM 12 O2' G A 66 -4.562 3.128 15.370 1.00 21.07 O
ATOM 13 C1' G A 66 -5.474 5.251 14.615 1.00 20.51 C
ATOM 14 N9 G A 66 -6.302 4.938 13.448 1.00 20.89 N
ATOM 15 C8 G A 66 -5.928 4.916 12.127 1.00 21.64 C
ATOM 16 N7 G A 66 -6.901 4.577 11.324 1.00 20.24 N
ATOM 17 C5 G A 66 -7.979 4.354 12.168 1.00 21.39 C
ATOM 18 C6 G A 66 -9.310 3.962 11.880 1.00 23.95 C
ATOM 19 O6 G A 66 -9.825 3.721 10.780 1.00 23.50 O
ATOM 20 N1 G A 66 -10.070 3.860 13.041 1.00 22.14 N
ATOM 21 C2 G A 66 -9.614 4.097 14.313 1.00 22.36 C
ATOM 22 N2 G A 66 -10.501 3.940 15.306 1.00 24.56 N
ATOM 23 N3 G A 66 -8.377 4.462 14.594 1.00 20.85 N
ATOM 24 C4 G A 66 -7.623 4.569 13.482 1.00 21.90 C
ATOM 25 P G A 67 -2.595 5.342 18.107 1.00 26.32 P
ATOM 26 OP1 G A 67 -3.298 5.197 19.403 1.00 28.16 O
ATOM 27 OP2 G A 67 -1.840 6.592 17.845 1.00 25.47 O
ATOM 28 O5' G A 67 -1.656 4.081 17.855 1.00 19.96 O
TER
ATOM 1 O3' A B 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 2 P A B 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 3 OP1 A B 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 4 OP2 A B 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 5 O5' A B 22 -11.448 7.683 25.347 1.00 33.18 O
ATOM 6 C5' A B 22 -12.816 7.401 25.598 1.00 29.21 C
ATOM 7 C4' A B 22 -13.415 6.521 24.526 1.00 28.74 C
ATOM 8 O4' A B 22 -13.299 7.166 23.230 1.00 29.36 O
ATOM 9 C3' A B 22 -12.755 5.169 24.306 1.00 25.92 C
ATOM 10 O3' A B 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 11 C2' A B 22 -13.223 4.816 22.903 1.00 31.00 C
ATOM 12 O2' A B 22 -14.577 4.392 22.918 1.00 33.59 O
ATOM 13 C1' A B 22 -13.158 6.182 22.223 1.00 28.74 C
ATOM 14 N9 A B 22 -11.871 6.387 21.532 1.00 28.30 N
ATOM 15 C8 A B 22 -10.820 7.198 21.880 1.00 28.39 C
ATOM 16 N7 A B 22 -9.813 7.138 21.039 1.00 27.28 N
ATOM 17 C5 A B 22 -10.227 6.224 20.077 1.00 27.06 C
ATOM 18 C6 A B 22 -9.619 5.719 18.911 1.00 25.94 C
ATOM 19 N6 A B 22 -8.404 6.079 18.493 1.00 25.54 N
ATOM 20 N1 A B 22 -10.308 4.818 18.174 1.00 24.17 N
ATOM 21 C2 A B 22 -11.527 4.455 18.589 1.00 23.60 C
ATOM 22 N3 A B 22 -12.203 4.858 19.665 1.00 26.30 N
ATOM 23 C4 A B 22 -11.492 5.753 20.373 1.00 26.39 C
ATOM 24 P G B 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 25 OP1 G B 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 26 OP2 G B 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 27 O5' G B 23 -11.454 2.492 24.506 1.00 25.90 O
TER
Atoms:
OP1: (-0.263,6.317,12.273)
OP2: (-1.908,5.298,10.612)
C3': (-3.321,5.255,15.574)
C1': (-5.474,5.251,14.615)
C5': (-2.695,7.105,13.919)
O6: (-9.825,3.721,10.780)
O4': (-4.979,6.569,14.475)
C8: (-5.928,4.916,12.127)
C2: (-9.614,4.097,14.313)
C6: (-9.310,3.962,11.880)
C5: (-7.979,4.354,12.168)
C4: (-7.623,4.569,13.482)
P: (-1.615,6.297,11.665)
C4': (-3.628,6.643,15.011)
C2': (-4.247,4.361,14.759)
O2': (-4.562,3.128,15.370)
N1: (-10.070,3.860,13.041)
N2: (-10.501,3.940,15.306)
N3: (-8.377,4.462,14.594)
N7: (-6.901,4.577,11.324)
N9: (-6.302,4.938,13.448)
O5': (-2.722,6.217,12.805)
O3': (-3.703,5.202,16.949)
OP2: (-1.908,5.298,10.612)
C3': (-3.321,5.255,15.574)
C1': (-5.474,5.251,14.615)
C5': (-2.695,7.105,13.919)
O6: (-9.825,3.721,10.780)
O4': (-4.979,6.569,14.475)
C8: (-5.928,4.916,12.127)
C2: (-9.614,4.097,14.313)
C6: (-9.310,3.962,11.880)
C5: (-7.979,4.354,12.168)
C4: (-7.623,4.569,13.482)
P: (-1.615,6.297,11.665)
C4': (-3.628,6.643,15.011)
C2': (-4.247,4.361,14.759)
O2': (-4.562,3.128,15.370)
N1: (-10.070,3.860,13.041)
N2: (-10.501,3.940,15.306)
N3: (-8.377,4.462,14.594)
N7: (-6.901,4.577,11.324)
N9: (-6.302,4.938,13.448)
O5': (-2.722,6.217,12.805)
O3': (-3.703,5.202,16.949)
OP1: (-11.699,10.080,26.084)
OP2: (-9.453,9.218,25.226)
C3': (-12.755,5.169,24.306)
C1': (-13.158,6.182,22.223)
C5': (-12.816,7.401,25.598)
O4': (-13.299,7.166,23.230)
C8: (-10.820,7.198,21.880)
O2': (-14.577,4.392,22.918)
C6: (-9.619,5.719,18.911)
C5: (-10.227,6.224,20.077)
C4: (-11.492,5.753,20.373)
P: (-10.937,9.184,25.182)
C4': (-13.415,6.521,24.526)
C2': (-13.223,4.816,22.903)
C2: (-11.527,4.455,18.589)
N1: (-10.308,4.818,18.174)
N3: (-12.203,4.858,19.665)
N6: (-8.404,6.079,18.493)
N7: (-9.813,7.138,21.039)
N9: (-11.871,6.387,21.532)
O5': (-11.448,7.683,25.347)
O3': (-13.111,4.204,25.279)
OP2: (-9.453,9.218,25.226)
C3': (-12.755,5.169,24.306)
C1': (-13.158,6.182,22.223)
C5': (-12.816,7.401,25.598)
O4': (-13.299,7.166,23.230)
C8: (-10.820,7.198,21.880)
O2': (-14.577,4.392,22.918)
C6: (-9.619,5.719,18.911)
C5: (-10.227,6.224,20.077)
C4: (-11.492,5.753,20.373)
P: (-10.937,9.184,25.182)
C4': (-13.415,6.521,24.526)
C2': (-13.223,4.816,22.903)
C2: (-11.527,4.455,18.589)
N1: (-10.308,4.818,18.174)
N3: (-12.203,4.858,19.665)
N6: (-8.404,6.079,18.493)
N7: (-9.813,7.138,21.039)
N9: (-11.871,6.387,21.532)
O5': (-11.448,7.683,25.347)
O3': (-13.111,4.204,25.279)
Image (generated by PyMOL):