ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1560:13026

Extra

PDB:
ATOM 1 O3' U A 559 110.389 9.412 24.407 1.00 47.36 O
ATOM 2 P G A 560 110.622 10.016 25.883 1.00 50.75 P
ATOM 3 OP1 G A 560 111.765 10.941 25.808 1.00 51.16 O
ATOM 4 OP2 G A 560 110.683 8.883 26.822 1.00 50.50 O
ATOM 5 O5' G A 560 109.295 10.847 26.131 1.00 50.41 O
ATOM 6 C5' G A 560 109.012 12.006 25.365 1.00 50.59 C
ATOM 7 C4' G A 560 107.595 12.455 25.567 1.00 50.22 C
ATOM 8 O4' G A 560 106.699 11.315 25.499 1.00 49.89 O
ATOM 9 C3' G A 560 107.287 13.051 26.922 1.00 49.94 C
ATOM 10 O3' G A 560 107.715 14.373 27.045 1.00 50.16 O
ATOM 11 C2' G A 560 105.784 12.904 27.008 1.00 49.52 C
ATOM 12 O2' G A 560 105.153 13.871 26.190 1.00 49.62 O
ATOM 13 C1' G A 560 105.599 11.533 26.369 1.00 49.47 C
ATOM 14 N9 G A 560 105.558 10.445 27.373 1.00 49.17 N
ATOM 15 C8 G A 560 106.488 9.467 27.580 1.00 49.29 C
ATOM 16 N7 G A 560 106.139 8.626 28.526 1.00 48.96 N
ATOM 17 C5 G A 560 104.919 9.070 28.960 1.00 48.61 C
ATOM 18 C6 G A 560 104.064 8.552 29.963 1.00 48.18 C
ATOM 19 O6 G A 560 104.273 7.546 30.663 1.00 48.04 O
ATOM 20 N1 G A 560 102.893 9.285 30.107 1.00 47.92 N
ATOM 21 C2 G A 560 102.635 10.390 29.351 1.00 48.08 C
ATOM 22 N2 G A 560 101.504 11.031 29.585 1.00 47.83 N
ATOM 23 N3 G A 560 103.409 10.881 28.412 1.00 48.48 N
ATOM 24 C4 G A 560 104.543 10.177 28.261 1.00 48.73 C
ATOM 25 P G A 561 108.137 14.921 28.469 1.00 59.92 P
ATOM 26 OP1 G A 561 108.807 16.212 28.228 1.00 60.29 O
ATOM 27 OP2 G A 561 108.896 13.837 29.154 1.00 59.88 O
ATOM 28 O5' G A 561 106.738 15.134 29.195 1.00 59.45 O
TER

ATOM 1 O3' A B3025 99.051 17.929 20.909 1.00 45.05 O
ATOM 2 P A B3026 99.361 19.020 22.034 1.00 64.80 P
ATOM 3 OP1 A B3026 98.996 20.349 21.462 1.00 65.04 O
ATOM 4 OP2 A B3026 100.759 18.791 22.495 1.00 64.98 O
ATOM 5 O5' A B3026 98.340 18.620 23.181 1.00 64.28 O
ATOM 6 C5' A B3026 96.933 18.683 22.964 1.00 64.04 C
ATOM 7 C4' A B3026 96.182 17.956 24.046 1.00 63.55 C
ATOM 8 O4' A B3026 96.824 16.671 24.285 1.00 63.47 O
ATOM 9 C3' A B3026 96.128 18.667 25.401 1.00 63.35 C
ATOM 10 O3' A B3026 94.898 18.327 26.045 1.00 62.93 O
ATOM 11 C2' A B3026 97.278 18.018 26.161 1.00 63.35 C
ATOM 12 O2' A B3026 97.159 18.069 27.570 1.00 63.06 O
ATOM 13 C1' A B3026 97.224 16.576 25.637 1.00 63.26 C
ATOM 14 N9 A B3026 98.520 15.873 25.695 1.00 63.44 N
ATOM 15 C8 A B3026 99.645 16.085 24.919 1.00 63.87 C
ATOM 16 N7 A B3026 100.670 15.309 25.226 1.00 63.94 N
ATOM 17 C5 A B3026 100.226 14.549 26.284 1.00 63.54 C
ATOM 18 C6 A B3026 100.830 13.543 27.050 1.00 63.42 C
ATOM 19 N6 A B3026 102.063 13.115 26.893 1.00 63.69 N
ATOM 20 N1 A B3026 100.103 12.965 28.023 1.00 63.01 N
ATOM 21 C2 A B3026 98.847 13.388 28.210 1.00 62.74 C
ATOM 22 N3 A B3026 98.157 14.323 27.552 1.00 62.81 N
ATOM 23 C4 A B3026 98.906 14.880 26.583 1.00 63.23 C
ATOM 24 P U B3027 94.115 19.377 26.973 1.00 78.70 P
ATOM 25 OP1 U B3027 95.131 20.181 27.714 1.00 78.88 O
ATOM 26 OP2 U B3027 93.120 18.587 27.749 1.00 78.25 O
ATOM 27 O5' U B3027 93.379 20.286 25.894 1.00 78.91 O
TER

Atoms:
OP1: (111.765,10.941,25.808)
OP2: (110.683,8.883,26.822)
C3': (107.287,13.051,26.922)
C1': (105.599,11.533,26.369)
C5': (109.012,12.006,25.365)
O6: (104.273,7.546,30.663)
O4': (106.699,11.315,25.499)
C8: (106.488,9.467,27.580)
C2: (102.635,10.390,29.351)
C6: (104.064,8.552,29.963)
C5: (104.919,9.070,28.960)
C4: (104.543,10.177,28.261)
P: (110.622,10.016,25.883)
C4': (107.595,12.455,25.567)
C2': (105.784,12.904,27.008)
O2': (105.153,13.871,26.190)
N1: (102.893,9.285,30.107)
N2: (101.504,11.031,29.585)
N3: (103.409,10.881,28.412)
N7: (106.139,8.626,28.526)
N9: (105.558,10.445,27.373)
O5': (109.295,10.847,26.131)
O3': (107.715,14.373,27.045)
OP1: (98.996,20.349,21.462)
OP2: (100.759,18.791,22.495)
C3': (96.128,18.667,25.401)
C1': (97.224,16.576,25.637)
C5': (96.933,18.683,22.964)
O4': (96.824,16.671,24.285)
C8: (99.645,16.085,24.919)
O2': (97.159,18.069,27.570)
C6: (100.830,13.543,27.050)
C5: (100.226,14.549,26.284)
C4: (98.906,14.880,26.583)
P: (99.361,19.020,22.034)
C4': (96.182,17.956,24.046)
C2': (97.278,18.018,26.161)
C2: (98.847,13.388,28.210)
N1: (100.103,12.965,28.023)
N3: (98.157,14.323,27.552)
N6: (102.063,13.115,26.893)
N7: (100.670,15.309,25.226)
N9: (98.520,15.873,25.695)
O5': (98.340,18.620,23.181)
O3': (94.898,18.327,26.045)
Image (generated by PyMOL):
PyMOL image
show in jmol