Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y27:X35:X62
Extra
PDB:
ATOM 1 O3' U A 34 -4.281 -6.379 8.510 1.00 49.03 O
ATOM 2 P U A 35 -4.715 -6.649 10.022 1.00 50.03 P
ATOM 3 OP1 U A 35 -6.172 -6.935 10.014 1.00 49.92 O
ATOM 4 OP2 U A 35 -4.181 -5.574 10.888 1.00 49.55 O
ATOM 5 O5' U A 35 -3.947 -7.997 10.373 1.00 48.90 O
ATOM 6 C5' U A 35 -4.221 -9.231 9.724 1.00 47.48 C
ATOM 7 C4' U A 35 -3.112 -10.179 10.132 1.00 47.41 C
ATOM 8 O4' U A 35 -1.857 -9.719 9.574 1.00 47.11 O
ATOM 9 C3' U A 35 -2.882 -10.220 11.639 1.00 47.28 C
ATOM 10 O3' U A 35 -2.994 -11.547 12.094 1.00 46.70 O
ATOM 11 C2' U A 35 -1.489 -9.630 11.851 1.00 47.26 C
ATOM 12 O2' U A 35 -0.784 -10.194 12.938 1.00 47.06 O
ATOM 13 C1' U A 35 -0.863 -10.026 10.522 1.00 48.30 C
ATOM 14 N1 U A 35 0.414 -9.345 10.156 1.00 48.29 N
ATOM 15 C2 U A 35 1.448 -10.127 9.687 1.00 48.50 C
ATOM 16 O2 U A 35 1.355 -11.336 9.560 1.00 49.15 O
ATOM 17 N3 U A 35 2.594 -9.435 9.365 1.00 48.75 N
ATOM 18 C4 U A 35 2.788 -8.064 9.468 1.00 48.76 C
ATOM 19 O4 U A 35 3.859 -7.572 9.145 1.00 49.37 O
ATOM 20 C5 U A 35 1.664 -7.316 9.967 1.00 49.16 C
ATOM 21 C6 U A 35 0.539 -7.973 10.280 1.00 48.72 C
ATOM 22 P C A 36 -3.700 -11.762 13.504 1.00 46.49 P
ATOM 23 OP1 C A 36 -5.019 -11.085 13.530 1.00 45.80 O
ATOM 24 OP2 C A 36 -2.675 -11.471 14.531 1.00 45.28 O
ATOM 25 O5' C A 36 -4.040 -13.311 13.469 1.00 46.83 O
TER
ATOM 1 O3' U B 61 5.779 -18.532 11.831 1.00 48.97 O
ATOM 2 P A B 62 5.986 -18.521 10.238 1.00 48.11 P
ATOM 3 OP1 A B 62 5.437 -19.788 9.710 1.00 48.94 O
ATOM 4 OP2 A B 62 7.383 -18.144 9.954 1.00 49.98 O
ATOM 5 O5' A B 62 5.059 -17.327 9.746 1.00 48.92 O
ATOM 6 C5' A B 62 3.648 -17.328 9.951 1.00 48.57 C
ATOM 7 C4' A B 62 3.113 -15.959 9.592 1.00 48.76 C
ATOM 8 O4' A B 62 3.727 -14.981 10.466 1.00 48.39 O
ATOM 9 C3' A B 62 3.500 -15.468 8.203 1.00 49.10 C
ATOM 10 O3' A B 62 2.633 -16.007 7.205 1.00 49.68 O
ATOM 11 C2' A B 62 3.347 -13.956 8.362 1.00 49.26 C
ATOM 12 O2' A B 62 1.999 -13.529 8.296 1.00 48.59 O
ATOM 13 C1' A B 62 3.895 -13.752 9.772 1.00 48.00 C
ATOM 14 N9 A B 62 5.306 -13.369 9.828 1.00 47.65 N
ATOM 15 C8 A B 62 6.362 -14.195 10.094 1.00 47.51 C
ATOM 16 N7 A B 62 7.527 -13.596 10.095 1.00 47.33 N
ATOM 17 C5 A B 62 7.217 -12.279 9.811 1.00 47.36 C
ATOM 18 C6 A B 62 8.014 -11.125 9.668 1.00 46.90 C
ATOM 19 N6 A B 62 9.334 -11.140 9.807 1.00 46.85 N
ATOM 20 N1 A B 62 7.399 -9.957 9.371 1.00 47.53 N
ATOM 21 C2 A B 62 6.067 -9.941 9.235 1.00 47.22 C
ATOM 22 N3 A B 62 5.219 -10.962 9.353 1.00 47.56 N
ATOM 23 C4 A B 62 5.853 -12.115 9.643 1.00 47.53 C
ATOM 24 P U B 63 3.134 -16.230 5.696 1.00 49.51 P
ATOM 25 OP1 U B 63 2.109 -17.053 5.017 1.00 50.11 O
ATOM 26 OP2 U B 63 4.542 -16.677 5.716 1.00 50.53 O
ATOM 27 O5' U B 63 3.110 -14.772 5.076 1.00 48.62 O
TER
ATOM 2 P U A 35 -4.715 -6.649 10.022 1.00 50.03 P
ATOM 3 OP1 U A 35 -6.172 -6.935 10.014 1.00 49.92 O
ATOM 4 OP2 U A 35 -4.181 -5.574 10.888 1.00 49.55 O
ATOM 5 O5' U A 35 -3.947 -7.997 10.373 1.00 48.90 O
ATOM 6 C5' U A 35 -4.221 -9.231 9.724 1.00 47.48 C
ATOM 7 C4' U A 35 -3.112 -10.179 10.132 1.00 47.41 C
ATOM 8 O4' U A 35 -1.857 -9.719 9.574 1.00 47.11 O
ATOM 9 C3' U A 35 -2.882 -10.220 11.639 1.00 47.28 C
ATOM 10 O3' U A 35 -2.994 -11.547 12.094 1.00 46.70 O
ATOM 11 C2' U A 35 -1.489 -9.630 11.851 1.00 47.26 C
ATOM 12 O2' U A 35 -0.784 -10.194 12.938 1.00 47.06 O
ATOM 13 C1' U A 35 -0.863 -10.026 10.522 1.00 48.30 C
ATOM 14 N1 U A 35 0.414 -9.345 10.156 1.00 48.29 N
ATOM 15 C2 U A 35 1.448 -10.127 9.687 1.00 48.50 C
ATOM 16 O2 U A 35 1.355 -11.336 9.560 1.00 49.15 O
ATOM 17 N3 U A 35 2.594 -9.435 9.365 1.00 48.75 N
ATOM 18 C4 U A 35 2.788 -8.064 9.468 1.00 48.76 C
ATOM 19 O4 U A 35 3.859 -7.572 9.145 1.00 49.37 O
ATOM 20 C5 U A 35 1.664 -7.316 9.967 1.00 49.16 C
ATOM 21 C6 U A 35 0.539 -7.973 10.280 1.00 48.72 C
ATOM 22 P C A 36 -3.700 -11.762 13.504 1.00 46.49 P
ATOM 23 OP1 C A 36 -5.019 -11.085 13.530 1.00 45.80 O
ATOM 24 OP2 C A 36 -2.675 -11.471 14.531 1.00 45.28 O
ATOM 25 O5' C A 36 -4.040 -13.311 13.469 1.00 46.83 O
TER
ATOM 1 O3' U B 61 5.779 -18.532 11.831 1.00 48.97 O
ATOM 2 P A B 62 5.986 -18.521 10.238 1.00 48.11 P
ATOM 3 OP1 A B 62 5.437 -19.788 9.710 1.00 48.94 O
ATOM 4 OP2 A B 62 7.383 -18.144 9.954 1.00 49.98 O
ATOM 5 O5' A B 62 5.059 -17.327 9.746 1.00 48.92 O
ATOM 6 C5' A B 62 3.648 -17.328 9.951 1.00 48.57 C
ATOM 7 C4' A B 62 3.113 -15.959 9.592 1.00 48.76 C
ATOM 8 O4' A B 62 3.727 -14.981 10.466 1.00 48.39 O
ATOM 9 C3' A B 62 3.500 -15.468 8.203 1.00 49.10 C
ATOM 10 O3' A B 62 2.633 -16.007 7.205 1.00 49.68 O
ATOM 11 C2' A B 62 3.347 -13.956 8.362 1.00 49.26 C
ATOM 12 O2' A B 62 1.999 -13.529 8.296 1.00 48.59 O
ATOM 13 C1' A B 62 3.895 -13.752 9.772 1.00 48.00 C
ATOM 14 N9 A B 62 5.306 -13.369 9.828 1.00 47.65 N
ATOM 15 C8 A B 62 6.362 -14.195 10.094 1.00 47.51 C
ATOM 16 N7 A B 62 7.527 -13.596 10.095 1.00 47.33 N
ATOM 17 C5 A B 62 7.217 -12.279 9.811 1.00 47.36 C
ATOM 18 C6 A B 62 8.014 -11.125 9.668 1.00 46.90 C
ATOM 19 N6 A B 62 9.334 -11.140 9.807 1.00 46.85 N
ATOM 20 N1 A B 62 7.399 -9.957 9.371 1.00 47.53 N
ATOM 21 C2 A B 62 6.067 -9.941 9.235 1.00 47.22 C
ATOM 22 N3 A B 62 5.219 -10.962 9.353 1.00 47.56 N
ATOM 23 C4 A B 62 5.853 -12.115 9.643 1.00 47.53 C
ATOM 24 P U B 63 3.134 -16.230 5.696 1.00 49.51 P
ATOM 25 OP1 U B 63 2.109 -17.053 5.017 1.00 50.11 O
ATOM 26 OP2 U B 63 4.542 -16.677 5.716 1.00 50.53 O
ATOM 27 O5' U B 63 3.110 -14.772 5.076 1.00 48.62 O
TER
Atoms:
C4: (2.788,-8.064,9.468)
N3: (2.594,-9.435,9.365)
OP1: (-6.172,-6.935,10.014)
OP2: (-4.181,-5.574,10.888)
C2: (1.448,-10.127,9.687)
C1': (-0.863,-10.026,10.522)
C3': (-2.882,-10.220,11.639)
O5': (-3.947,-7.997,10.373)
O4': (-1.857,-9.719,9.574)
C5': (-4.221,-9.231,9.724)
P: (-4.715,-6.649,10.022)
C4': (-3.112,-10.179,10.132)
C2': (-1.489,-9.630,11.851)
O2': (-0.784,-10.194,12.938)
N1: (0.414,-9.345,10.156)
O4: (3.859,-7.572,9.145)
O2: (1.355,-11.336,9.560)
C6: (0.539,-7.973,10.280)
C5: (1.664,-7.316,9.967)
O3': (-2.994,-11.547,12.094)
N3: (2.594,-9.435,9.365)
OP1: (-6.172,-6.935,10.014)
OP2: (-4.181,-5.574,10.888)
C2: (1.448,-10.127,9.687)
C1': (-0.863,-10.026,10.522)
C3': (-2.882,-10.220,11.639)
O5': (-3.947,-7.997,10.373)
O4': (-1.857,-9.719,9.574)
C5': (-4.221,-9.231,9.724)
P: (-4.715,-6.649,10.022)
C4': (-3.112,-10.179,10.132)
C2': (-1.489,-9.630,11.851)
O2': (-0.784,-10.194,12.938)
N1: (0.414,-9.345,10.156)
O4: (3.859,-7.572,9.145)
O2: (1.355,-11.336,9.560)
C6: (0.539,-7.973,10.280)
C5: (1.664,-7.316,9.967)
O3': (-2.994,-11.547,12.094)
OP1: (5.437,-19.788,9.710)
OP2: (7.383,-18.144,9.954)
C3': (3.500,-15.468,8.203)
C1': (3.895,-13.752,9.772)
C5': (3.648,-17.328,9.951)
O4': (3.727,-14.981,10.466)
C8: (6.362,-14.195,10.094)
O2': (1.999,-13.529,8.296)
C6: (8.014,-11.125,9.668)
C5: (7.217,-12.279,9.811)
C4: (5.853,-12.115,9.643)
P: (5.986,-18.521,10.238)
C4': (3.113,-15.959,9.592)
C2': (3.347,-13.956,8.362)
C2: (6.067,-9.941,9.235)
N1: (7.399,-9.957,9.371)
N3: (5.219,-10.962,9.353)
N6: (9.334,-11.140,9.807)
N7: (7.527,-13.596,10.095)
N9: (5.306,-13.369,9.828)
O5': (5.059,-17.327,9.746)
O3': (2.633,-16.007,7.205)
OP2: (7.383,-18.144,9.954)
C3': (3.500,-15.468,8.203)
C1': (3.895,-13.752,9.772)
C5': (3.648,-17.328,9.951)
O4': (3.727,-14.981,10.466)
C8: (6.362,-14.195,10.094)
O2': (1.999,-13.529,8.296)
C6: (8.014,-11.125,9.668)
C5: (7.217,-12.279,9.811)
C4: (5.853,-12.115,9.643)
P: (5.986,-18.521,10.238)
C4': (3.113,-15.959,9.592)
C2': (3.347,-13.956,8.362)
C2: (6.067,-9.941,9.235)
N1: (7.399,-9.957,9.371)
N3: (5.219,-10.962,9.353)
N6: (9.334,-11.140,9.807)
N7: (7.527,-13.596,10.095)
N9: (5.306,-13.369,9.828)
O5': (5.059,-17.327,9.746)
O3': (2.633,-16.007,7.205)
Image (generated by PyMOL):