ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:0334:0317

Extra

PDB:
ATOM 1 O3' G A 333 27.982 135.348 26.747 1.00 64.44 O
ATOM 2 P U A 334 27.988 134.117 25.716 1.00 65.57 P
ATOM 3 OP1 U A 334 29.302 133.433 25.807 1.00 66.38 O
ATOM 4 OP2 U A 334 27.537 134.650 24.408 1.00 66.83 O
ATOM 5 O5' U A 334 26.870 133.125 26.275 1.00 64.96 O
ATOM 6 C5' U A 334 27.145 132.234 27.383 1.00 62.24 C
ATOM 7 C4' U A 334 26.010 131.251 27.564 1.00 60.49 C
ATOM 8 O4' U A 334 24.807 131.953 27.968 1.00 60.40 O
ATOM 9 C3' U A 334 25.625 130.502 26.303 1.00 59.28 C
ATOM 10 O3' U A 334 26.452 129.361 26.134 1.00 58.31 O
ATOM 11 C2' U A 334 24.160 130.166 26.546 1.00 60.70 C
ATOM 12 O2' U A 334 23.962 129.050 27.389 1.00 60.78 O
ATOM 13 C1' U A 334 23.690 131.421 27.284 1.00 61.15 C
ATOM 14 N1 U A 334 23.150 132.469 26.402 1.00 63.67 N
ATOM 15 C2 U A 334 21.869 132.300 25.914 1.00 64.25 C
ATOM 16 O2 U A 334 21.192 131.323 26.175 1.00 65.38 O
ATOM 17 N3 U A 334 21.412 133.315 25.105 1.00 64.79 N
ATOM 18 C4 U A 334 22.094 134.457 24.733 1.00 64.78 C
ATOM 19 O4 U A 334 21.557 135.272 23.975 1.00 62.01 O
ATOM 20 C5 U A 334 23.417 134.558 25.275 1.00 65.90 C
ATOM 21 C6 U A 334 23.887 133.587 26.069 1.00 65.24 C
ATOM 22 P A A 335 27.011 128.999 24.679 1.00 57.80 P
ATOM 23 OP1 A A 335 28.051 127.944 24.803 1.00 56.77 O
ATOM 24 OP2 A A 335 27.344 130.276 24.012 1.00 59.18 O
ATOM 25 O5' A A 335 25.746 128.369 23.947 1.00 61.15 O
TER

ATOM 1 O3' U B 316 19.147 124.933 21.744 1.00 66.55 O
ATOM 2 P A B 317 18.712 124.785 23.286 1.00 65.48 P
ATOM 3 OP1 A B 317 19.586 123.733 23.871 1.00 62.93 O
ATOM 4 OP2 A B 317 17.232 124.625 23.335 1.00 64.88 O
ATOM 5 O5' A B 317 19.041 126.201 23.943 1.00 62.82 O
ATOM 6 C5' A B 317 20.248 126.412 24.693 1.00 61.27 C
ATOM 7 C4' A B 317 20.261 127.798 25.292 1.00 59.80 C
ATOM 8 O4' A B 317 20.189 128.773 24.218 1.00 60.44 O
ATOM 9 C3' A B 317 19.110 128.131 26.238 1.00 59.67 C
ATOM 10 O3' A B 317 19.537 129.127 27.188 1.00 61.37 O
ATOM 11 C2' A B 317 18.122 128.794 25.283 1.00 59.48 C
ATOM 12 O2' A B 317 17.177 129.634 25.914 1.00 60.15 O
ATOM 13 C1' A B 317 19.081 129.615 24.428 1.00 60.70 C
ATOM 14 N9 A B 317 18.591 130.091 23.134 1.00 62.72 N
ATOM 15 C8 A B 317 17.889 129.414 22.166 1.00 63.55 C
ATOM 16 N7 A B 317 17.585 130.147 21.124 1.00 64.67 N
ATOM 17 C5 A B 317 18.125 131.392 21.423 1.00 65.69 C
ATOM 18 C6 A B 317 18.138 132.615 20.724 1.00 65.79 C
ATOM 19 N6 A B 317 17.560 132.795 19.534 1.00 65.43 N
ATOM 20 N1 A B 317 18.771 133.662 21.300 1.00 65.68 N
ATOM 21 C2 A B 317 19.342 133.484 22.497 1.00 65.39 C
ATOM 22 N3 A B 317 19.390 132.390 23.254 1.00 64.63 N
ATOM 23 C4 A B 317 18.756 131.367 22.654 1.00 64.47 C
ATOM 24 P C B 318 20.344 128.715 28.530 1.00 60.21 P
ATOM 25 OP1 C B 318 20.364 129.949 29.355 1.00 59.21 O
ATOM 26 OP2 C B 318 21.629 128.048 28.160 1.00 56.64 O
ATOM 27 O5' C B 318 19.417 127.664 29.289 1.00 58.83 O
TER

Atoms:
C4: (22.094,134.457,24.733)
N3: (21.412,133.315,25.105)
OP1: (29.302,133.433,25.807)
OP2: (27.537,134.650,24.408)
C2: (21.869,132.300,25.914)
C1': (23.690,131.421,27.284)
C3': (25.625,130.502,26.303)
O5': (26.870,133.125,26.275)
O4': (24.807,131.953,27.968)
C5': (27.145,132.234,27.383)
P: (27.988,134.117,25.716)
C4': (26.010,131.251,27.564)
C2': (24.160,130.166,26.546)
O2': (23.962,129.050,27.389)
N1: (23.150,132.469,26.402)
O4: (21.557,135.272,23.975)
O2: (21.192,131.323,26.175)
C6: (23.887,133.587,26.069)
C5: (23.417,134.558,25.275)
O3': (26.452,129.361,26.134)
OP1: (19.586,123.733,23.871)
OP2: (17.232,124.625,23.335)
C3': (19.110,128.131,26.238)
C1': (19.081,129.615,24.428)
C5': (20.248,126.412,24.693)
O4': (20.189,128.773,24.218)
C8: (17.889,129.414,22.166)
O2': (17.177,129.634,25.914)
C6: (18.138,132.615,20.724)
C5: (18.125,131.392,21.423)
C4: (18.756,131.367,22.654)
P: (18.712,124.785,23.286)
C4': (20.261,127.798,25.292)
C2': (18.122,128.794,25.283)
C2: (19.342,133.484,22.497)
N1: (18.771,133.662,21.300)
N3: (19.390,132.390,23.254)
N6: (17.560,132.795,19.534)
N7: (17.585,130.147,21.124)
N9: (18.591,130.091,23.134)
O5': (19.041,126.201,23.943)
O3': (19.537,129.127,27.188)
Image (generated by PyMOL):
PyMOL image
show in jmol