Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1241:A1242
Extra
PDB:
ATOM 1 O3' G A1240 29.226 -89.257 -0.793 1.00 53.49 O
ATOM 2 P A A1241 28.711 -88.496 0.517 1.00 58.47 P
ATOM 3 OP1 A A1241 29.492 -89.010 1.672 1.00 61.07 O
ATOM 4 OP2 A A1241 27.228 -88.593 0.539 1.00 50.59 O
ATOM 5 O5' A A1241 29.156 -86.980 0.285 1.00 52.58 O
ATOM 6 C5' A A1241 28.966 -86.014 1.324 1.00 55.77 C
ATOM 7 C4' A A1241 29.106 -84.614 0.788 1.00 49.23 C
ATOM 8 O4' A A1241 28.334 -84.514 -0.440 1.00 51.30 O
ATOM 9 C3' A A1241 28.484 -83.521 1.655 1.00 45.83 C
ATOM 10 O3' A A1241 29.239 -82.956 2.753 1.00 44.31 O
ATOM 11 C2' A A1241 28.243 -82.404 0.640 1.00 54.48 C
ATOM 12 O2' A A1241 29.389 -81.596 0.445 1.00 62.34 O
ATOM 13 C1' A A1241 28.019 -83.157 -0.665 1.00 57.05 C
ATOM 14 N9 A A1241 26.692 -83.009 -1.277 1.00 58.26 N
ATOM 15 C8 A A1241 25.538 -83.683 -0.996 1.00 56.25 C
ATOM 16 N7 A A1241 24.527 -83.343 -1.768 1.00 63.17 N
ATOM 17 C5 A A1241 25.054 -82.370 -2.613 1.00 59.28 C
ATOM 18 C6 A A1241 24.491 -81.627 -3.690 1.00 57.44 C
ATOM 19 N6 A A1241 23.245 -81.776 -4.135 1.00 58.99 N
ATOM 20 N1 A A1241 25.280 -80.726 -4.308 1.00 55.54 N
ATOM 21 C2 A A1241 26.536 -80.595 -3.893 1.00 54.43 C
ATOM 22 N3 A A1241 27.181 -81.239 -2.914 1.00 56.79 N
ATOM 23 C4 A A1241 26.377 -82.132 -2.305 1.00 58.65 C
ATOM 24 P A A1242 30.850 -83.171 2.922 1.00 49.86 P
ATOM 25 OP1 A A1242 31.579 -83.051 1.639 1.00 46.61 O
ATOM 26 OP2 A A1242 31.128 -84.332 3.824 1.00 45.50 O
ATOM 27 O5' A A1242 31.250 -81.870 3.753 1.00 45.41 O
TER
ATOM 1 O3' A B1241 29.239 -82.956 2.753 1.00 44.31 O
ATOM 2 P A B1242 30.850 -83.171 2.922 1.00 49.86 P
ATOM 3 OP1 A B1242 31.579 -83.051 1.639 1.00 46.61 O
ATOM 4 OP2 A B1242 31.128 -84.332 3.824 1.00 45.50 O
ATOM 5 O5' A B1242 31.250 -81.870 3.753 1.00 45.41 O
ATOM 6 C5' A B1242 30.315 -81.295 4.667 1.00 50.60 C
ATOM 7 C4' A B1242 30.414 -79.782 4.669 1.00 52.83 C
ATOM 8 O4' A B1242 31.697 -79.389 5.198 1.00 47.35 O
ATOM 9 C3' A B1242 30.248 -79.053 3.341 1.00 49.52 C
ATOM 10 O3' A B1242 28.858 -78.745 3.234 1.00 54.08 O
ATOM 11 C2' A B1242 31.059 -77.776 3.568 1.00 47.70 C
ATOM 12 O2' A B1242 30.327 -76.816 4.294 1.00 47.34 O
ATOM 13 C1' A B1242 32.174 -78.265 4.498 1.00 47.61 C
ATOM 14 N9 A B1242 33.406 -78.679 3.844 1.00 46.01 N
ATOM 15 C8 A B1242 33.814 -79.978 3.659 1.00 45.81 C
ATOM 16 N7 A B1242 34.970 -80.087 3.070 1.00 41.56 N
ATOM 17 C5 A B1242 35.350 -78.776 2.839 1.00 44.51 C
ATOM 18 C6 A B1242 36.477 -78.234 2.241 1.00 45.22 C
ATOM 19 N6 A B1242 37.470 -78.994 1.761 1.00 45.64 N
ATOM 20 N1 A B1242 36.564 -76.887 2.151 1.00 45.67 N
ATOM 21 C2 A B1242 35.567 -76.153 2.653 1.00 44.74 C
ATOM 22 N3 A B1242 34.445 -76.553 3.252 1.00 45.67 N
ATOM 23 C4 A B1242 34.396 -77.896 3.310 1.00 45.51 C
ATOM 24 P U B1243 28.130 -78.701 1.801 1.00 56.09 P
ATOM 25 OP1 U B1243 26.849 -78.002 2.057 1.00 53.61 O
ATOM 26 OP2 U B1243 28.089 -80.050 1.245 1.00 48.53 O
ATOM 27 O5' U B1243 29.009 -77.736 0.887 1.00 49.91 O
TER
ATOM 2 P A A1241 28.711 -88.496 0.517 1.00 58.47 P
ATOM 3 OP1 A A1241 29.492 -89.010 1.672 1.00 61.07 O
ATOM 4 OP2 A A1241 27.228 -88.593 0.539 1.00 50.59 O
ATOM 5 O5' A A1241 29.156 -86.980 0.285 1.00 52.58 O
ATOM 6 C5' A A1241 28.966 -86.014 1.324 1.00 55.77 C
ATOM 7 C4' A A1241 29.106 -84.614 0.788 1.00 49.23 C
ATOM 8 O4' A A1241 28.334 -84.514 -0.440 1.00 51.30 O
ATOM 9 C3' A A1241 28.484 -83.521 1.655 1.00 45.83 C
ATOM 10 O3' A A1241 29.239 -82.956 2.753 1.00 44.31 O
ATOM 11 C2' A A1241 28.243 -82.404 0.640 1.00 54.48 C
ATOM 12 O2' A A1241 29.389 -81.596 0.445 1.00 62.34 O
ATOM 13 C1' A A1241 28.019 -83.157 -0.665 1.00 57.05 C
ATOM 14 N9 A A1241 26.692 -83.009 -1.277 1.00 58.26 N
ATOM 15 C8 A A1241 25.538 -83.683 -0.996 1.00 56.25 C
ATOM 16 N7 A A1241 24.527 -83.343 -1.768 1.00 63.17 N
ATOM 17 C5 A A1241 25.054 -82.370 -2.613 1.00 59.28 C
ATOM 18 C6 A A1241 24.491 -81.627 -3.690 1.00 57.44 C
ATOM 19 N6 A A1241 23.245 -81.776 -4.135 1.00 58.99 N
ATOM 20 N1 A A1241 25.280 -80.726 -4.308 1.00 55.54 N
ATOM 21 C2 A A1241 26.536 -80.595 -3.893 1.00 54.43 C
ATOM 22 N3 A A1241 27.181 -81.239 -2.914 1.00 56.79 N
ATOM 23 C4 A A1241 26.377 -82.132 -2.305 1.00 58.65 C
ATOM 24 P A A1242 30.850 -83.171 2.922 1.00 49.86 P
ATOM 25 OP1 A A1242 31.579 -83.051 1.639 1.00 46.61 O
ATOM 26 OP2 A A1242 31.128 -84.332 3.824 1.00 45.50 O
ATOM 27 O5' A A1242 31.250 -81.870 3.753 1.00 45.41 O
TER
ATOM 1 O3' A B1241 29.239 -82.956 2.753 1.00 44.31 O
ATOM 2 P A B1242 30.850 -83.171 2.922 1.00 49.86 P
ATOM 3 OP1 A B1242 31.579 -83.051 1.639 1.00 46.61 O
ATOM 4 OP2 A B1242 31.128 -84.332 3.824 1.00 45.50 O
ATOM 5 O5' A B1242 31.250 -81.870 3.753 1.00 45.41 O
ATOM 6 C5' A B1242 30.315 -81.295 4.667 1.00 50.60 C
ATOM 7 C4' A B1242 30.414 -79.782 4.669 1.00 52.83 C
ATOM 8 O4' A B1242 31.697 -79.389 5.198 1.00 47.35 O
ATOM 9 C3' A B1242 30.248 -79.053 3.341 1.00 49.52 C
ATOM 10 O3' A B1242 28.858 -78.745 3.234 1.00 54.08 O
ATOM 11 C2' A B1242 31.059 -77.776 3.568 1.00 47.70 C
ATOM 12 O2' A B1242 30.327 -76.816 4.294 1.00 47.34 O
ATOM 13 C1' A B1242 32.174 -78.265 4.498 1.00 47.61 C
ATOM 14 N9 A B1242 33.406 -78.679 3.844 1.00 46.01 N
ATOM 15 C8 A B1242 33.814 -79.978 3.659 1.00 45.81 C
ATOM 16 N7 A B1242 34.970 -80.087 3.070 1.00 41.56 N
ATOM 17 C5 A B1242 35.350 -78.776 2.839 1.00 44.51 C
ATOM 18 C6 A B1242 36.477 -78.234 2.241 1.00 45.22 C
ATOM 19 N6 A B1242 37.470 -78.994 1.761 1.00 45.64 N
ATOM 20 N1 A B1242 36.564 -76.887 2.151 1.00 45.67 N
ATOM 21 C2 A B1242 35.567 -76.153 2.653 1.00 44.74 C
ATOM 22 N3 A B1242 34.445 -76.553 3.252 1.00 45.67 N
ATOM 23 C4 A B1242 34.396 -77.896 3.310 1.00 45.51 C
ATOM 24 P U B1243 28.130 -78.701 1.801 1.00 56.09 P
ATOM 25 OP1 U B1243 26.849 -78.002 2.057 1.00 53.61 O
ATOM 26 OP2 U B1243 28.089 -80.050 1.245 1.00 48.53 O
ATOM 27 O5' U B1243 29.009 -77.736 0.887 1.00 49.91 O
TER
Atoms:
OP1: (29.492,-89.010,1.672)
OP2: (27.228,-88.593,0.539)
C3': (28.484,-83.521,1.655)
C1': (28.019,-83.157,-0.665)
C5': (28.966,-86.014,1.324)
O4': (28.334,-84.514,-0.440)
C8: (25.538,-83.683,-0.996)
O2': (29.389,-81.596,0.445)
C6: (24.491,-81.627,-3.690)
C5: (25.054,-82.370,-2.613)
C4: (26.377,-82.132,-2.305)
P: (28.711,-88.496,0.517)
C4': (29.106,-84.614,0.788)
C2': (28.243,-82.404,0.640)
C2: (26.536,-80.595,-3.893)
N1: (25.280,-80.726,-4.308)
N3: (27.181,-81.239,-2.914)
N6: (23.245,-81.776,-4.135)
N7: (24.527,-83.343,-1.768)
N9: (26.692,-83.009,-1.277)
O5': (29.156,-86.980,0.285)
O3': (29.239,-82.956,2.753)
OP2: (27.228,-88.593,0.539)
C3': (28.484,-83.521,1.655)
C1': (28.019,-83.157,-0.665)
C5': (28.966,-86.014,1.324)
O4': (28.334,-84.514,-0.440)
C8: (25.538,-83.683,-0.996)
O2': (29.389,-81.596,0.445)
C6: (24.491,-81.627,-3.690)
C5: (25.054,-82.370,-2.613)
C4: (26.377,-82.132,-2.305)
P: (28.711,-88.496,0.517)
C4': (29.106,-84.614,0.788)
C2': (28.243,-82.404,0.640)
C2: (26.536,-80.595,-3.893)
N1: (25.280,-80.726,-4.308)
N3: (27.181,-81.239,-2.914)
N6: (23.245,-81.776,-4.135)
N7: (24.527,-83.343,-1.768)
N9: (26.692,-83.009,-1.277)
O5': (29.156,-86.980,0.285)
O3': (29.239,-82.956,2.753)
OP1: (31.579,-83.051,1.639)
OP2: (31.128,-84.332,3.824)
C3': (30.248,-79.053,3.341)
C1': (32.174,-78.265,4.498)
C5': (30.315,-81.295,4.667)
O4': (31.697,-79.389,5.198)
C8: (33.814,-79.978,3.659)
O2': (30.327,-76.816,4.294)
C6: (36.477,-78.234,2.241)
C5: (35.350,-78.776,2.839)
C4: (34.396,-77.896,3.310)
P: (30.850,-83.171,2.922)
C4': (30.414,-79.782,4.669)
C2': (31.059,-77.776,3.568)
C2: (35.567,-76.153,2.653)
N1: (36.564,-76.887,2.151)
N3: (34.445,-76.553,3.252)
N6: (37.470,-78.994,1.761)
N7: (34.970,-80.087,3.070)
N9: (33.406,-78.679,3.844)
O5': (31.250,-81.870,3.753)
O3': (28.858,-78.745,3.234)
OP2: (31.128,-84.332,3.824)
C3': (30.248,-79.053,3.341)
C1': (32.174,-78.265,4.498)
C5': (30.315,-81.295,4.667)
O4': (31.697,-79.389,5.198)
C8: (33.814,-79.978,3.659)
O2': (30.327,-76.816,4.294)
C6: (36.477,-78.234,2.241)
C5: (35.350,-78.776,2.839)
C4: (34.396,-77.896,3.310)
P: (30.850,-83.171,2.922)
C4': (30.414,-79.782,4.669)
C2': (31.059,-77.776,3.568)
C2: (35.567,-76.153,2.653)
N1: (36.564,-76.887,2.151)
N3: (34.445,-76.553,3.252)
N6: (37.470,-78.994,1.761)
N7: (34.970,-80.087,3.070)
N9: (33.406,-78.679,3.844)
O5': (31.250,-81.870,3.753)
O3': (28.858,-78.745,3.234)
Image (generated by PyMOL):