Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OH5:A1235:A1236
Extra
PDB:
ATOM 1 O3' G A1234 29.672 -88.954 0.032 1.00 45.01 O
ATOM 2 P A A1235 29.028 -88.172 1.279 1.00 49.51 P
ATOM 3 OP1 A A1235 29.980 -88.321 2.423 1.00 51.11 O
ATOM 4 OP2 A A1235 27.643 -88.647 1.451 1.00 49.87 O
ATOM 5 O5' A A1235 29.030 -86.680 0.778 1.00 55.91 O
ATOM 6 C5' A A1235 30.253 -86.038 0.493 1.00 58.85 C
ATOM 7 C4' A A1235 30.146 -84.548 0.608 1.00 50.69 C
ATOM 8 O4' A A1235 29.261 -84.059 -0.423 1.00 44.78 O
ATOM 9 C3' A A1235 29.609 -84.016 1.943 1.00 39.92 C
ATOM 10 O3' A A1235 30.428 -82.948 2.404 1.00 49.97 O
ATOM 11 C2' A A1235 28.248 -83.449 1.576 1.00 44.31 C
ATOM 12 O2' A A1235 27.883 -82.336 2.347 1.00 51.30 O
ATOM 13 C1' A A1235 28.454 -83.063 0.120 1.00 45.84 C
ATOM 14 N9 A A1235 27.233 -82.982 -0.664 1.00 32.82 N
ATOM 15 C8 A A1235 26.021 -83.521 -0.443 1.00 43.31 C
ATOM 16 N7 A A1235 25.139 -83.184 -1.345 1.00 46.32 N
ATOM 17 C5 A A1235 25.818 -82.360 -2.210 1.00 38.77 C
ATOM 18 C6 A A1235 25.450 -81.675 -3.380 1.00 35.38 C
ATOM 19 N6 A A1235 24.257 -81.681 -3.953 1.00 38.55 N
ATOM 20 N1 A A1235 26.379 -80.950 -3.988 1.00 38.62 N
ATOM 21 C2 A A1235 27.591 -80.904 -3.438 1.00 38.61 C
ATOM 22 N3 A A1235 28.057 -81.495 -2.347 1.00 40.42 N
ATOM 23 C4 A A1235 27.107 -82.231 -1.782 1.00 37.12 C
ATOM 24 P A A1236 31.726 -83.236 3.310 1.00 52.17 P
ATOM 25 OP1 A A1236 32.910 -83.297 2.382 1.00 32.02 O
ATOM 26 OP2 A A1236 31.414 -84.411 4.159 1.00 61.60 O
ATOM 27 O5' A A1236 31.805 -81.936 4.213 1.00 33.69 O
TER
ATOM 1 O3' A B1235 30.428 -82.948 2.404 1.00 49.97 O
ATOM 2 P A B1236 31.726 -83.236 3.310 1.00 52.17 P
ATOM 3 OP1 A B1236 32.910 -83.297 2.382 1.00 32.02 O
ATOM 4 OP2 A B1236 31.414 -84.411 4.159 1.00 61.60 O
ATOM 5 O5' A B1236 31.805 -81.936 4.213 1.00 33.69 O
ATOM 6 C5' A B1236 30.628 -81.317 4.678 1.00 35.51 C
ATOM 7 C4' A B1236 30.853 -79.860 4.944 1.00 34.03 C
ATOM 8 O4' A B1236 32.182 -79.666 5.455 1.00 32.56 O
ATOM 9 C3' A B1236 30.753 -78.948 3.735 1.00 35.16 C
ATOM 10 O3' A B1236 29.422 -78.528 3.507 1.00 34.99 O
ATOM 11 C2' A B1236 31.686 -77.792 4.075 1.00 35.15 C
ATOM 12 O2' A B1236 30.991 -76.794 4.800 1.00 39.73 O
ATOM 13 C1' A B1236 32.698 -78.442 5.012 1.00 33.60 C
ATOM 14 N9 A B1236 33.986 -78.687 4.365 1.00 36.17 N
ATOM 15 C8 A B1236 34.721 -79.837 4.388 1.00 39.72 C
ATOM 16 N7 A B1236 35.857 -79.763 3.744 1.00 36.67 N
ATOM 17 C5 A B1236 35.872 -78.460 3.284 1.00 36.74 C
ATOM 18 C6 A B1236 36.814 -77.742 2.527 1.00 33.76 C
ATOM 19 N6 A B1236 37.966 -78.235 2.089 1.00 36.04 N
ATOM 20 N1 A B1236 36.535 -76.473 2.226 1.00 31.19 N
ATOM 21 C2 A B1236 35.381 -75.984 2.678 1.00 39.92 C
ATOM 22 N3 A B1236 34.408 -76.543 3.399 1.00 42.35 N
ATOM 23 C4 A B1236 34.730 -77.797 3.672 1.00 36.90 C
ATOM 24 P U B1237 28.661 -78.916 2.157 1.00 40.07 P
ATOM 25 OP1 U B1237 27.238 -78.578 2.354 1.00 56.34 O
ATOM 26 OP2 U B1237 29.032 -80.314 1.829 1.00 44.87 O
ATOM 27 O5' U B1237 29.290 -77.924 1.107 1.00 40.76 O
TER
ATOM 2 P A A1235 29.028 -88.172 1.279 1.00 49.51 P
ATOM 3 OP1 A A1235 29.980 -88.321 2.423 1.00 51.11 O
ATOM 4 OP2 A A1235 27.643 -88.647 1.451 1.00 49.87 O
ATOM 5 O5' A A1235 29.030 -86.680 0.778 1.00 55.91 O
ATOM 6 C5' A A1235 30.253 -86.038 0.493 1.00 58.85 C
ATOM 7 C4' A A1235 30.146 -84.548 0.608 1.00 50.69 C
ATOM 8 O4' A A1235 29.261 -84.059 -0.423 1.00 44.78 O
ATOM 9 C3' A A1235 29.609 -84.016 1.943 1.00 39.92 C
ATOM 10 O3' A A1235 30.428 -82.948 2.404 1.00 49.97 O
ATOM 11 C2' A A1235 28.248 -83.449 1.576 1.00 44.31 C
ATOM 12 O2' A A1235 27.883 -82.336 2.347 1.00 51.30 O
ATOM 13 C1' A A1235 28.454 -83.063 0.120 1.00 45.84 C
ATOM 14 N9 A A1235 27.233 -82.982 -0.664 1.00 32.82 N
ATOM 15 C8 A A1235 26.021 -83.521 -0.443 1.00 43.31 C
ATOM 16 N7 A A1235 25.139 -83.184 -1.345 1.00 46.32 N
ATOM 17 C5 A A1235 25.818 -82.360 -2.210 1.00 38.77 C
ATOM 18 C6 A A1235 25.450 -81.675 -3.380 1.00 35.38 C
ATOM 19 N6 A A1235 24.257 -81.681 -3.953 1.00 38.55 N
ATOM 20 N1 A A1235 26.379 -80.950 -3.988 1.00 38.62 N
ATOM 21 C2 A A1235 27.591 -80.904 -3.438 1.00 38.61 C
ATOM 22 N3 A A1235 28.057 -81.495 -2.347 1.00 40.42 N
ATOM 23 C4 A A1235 27.107 -82.231 -1.782 1.00 37.12 C
ATOM 24 P A A1236 31.726 -83.236 3.310 1.00 52.17 P
ATOM 25 OP1 A A1236 32.910 -83.297 2.382 1.00 32.02 O
ATOM 26 OP2 A A1236 31.414 -84.411 4.159 1.00 61.60 O
ATOM 27 O5' A A1236 31.805 -81.936 4.213 1.00 33.69 O
TER
ATOM 1 O3' A B1235 30.428 -82.948 2.404 1.00 49.97 O
ATOM 2 P A B1236 31.726 -83.236 3.310 1.00 52.17 P
ATOM 3 OP1 A B1236 32.910 -83.297 2.382 1.00 32.02 O
ATOM 4 OP2 A B1236 31.414 -84.411 4.159 1.00 61.60 O
ATOM 5 O5' A B1236 31.805 -81.936 4.213 1.00 33.69 O
ATOM 6 C5' A B1236 30.628 -81.317 4.678 1.00 35.51 C
ATOM 7 C4' A B1236 30.853 -79.860 4.944 1.00 34.03 C
ATOM 8 O4' A B1236 32.182 -79.666 5.455 1.00 32.56 O
ATOM 9 C3' A B1236 30.753 -78.948 3.735 1.00 35.16 C
ATOM 10 O3' A B1236 29.422 -78.528 3.507 1.00 34.99 O
ATOM 11 C2' A B1236 31.686 -77.792 4.075 1.00 35.15 C
ATOM 12 O2' A B1236 30.991 -76.794 4.800 1.00 39.73 O
ATOM 13 C1' A B1236 32.698 -78.442 5.012 1.00 33.60 C
ATOM 14 N9 A B1236 33.986 -78.687 4.365 1.00 36.17 N
ATOM 15 C8 A B1236 34.721 -79.837 4.388 1.00 39.72 C
ATOM 16 N7 A B1236 35.857 -79.763 3.744 1.00 36.67 N
ATOM 17 C5 A B1236 35.872 -78.460 3.284 1.00 36.74 C
ATOM 18 C6 A B1236 36.814 -77.742 2.527 1.00 33.76 C
ATOM 19 N6 A B1236 37.966 -78.235 2.089 1.00 36.04 N
ATOM 20 N1 A B1236 36.535 -76.473 2.226 1.00 31.19 N
ATOM 21 C2 A B1236 35.381 -75.984 2.678 1.00 39.92 C
ATOM 22 N3 A B1236 34.408 -76.543 3.399 1.00 42.35 N
ATOM 23 C4 A B1236 34.730 -77.797 3.672 1.00 36.90 C
ATOM 24 P U B1237 28.661 -78.916 2.157 1.00 40.07 P
ATOM 25 OP1 U B1237 27.238 -78.578 2.354 1.00 56.34 O
ATOM 26 OP2 U B1237 29.032 -80.314 1.829 1.00 44.87 O
ATOM 27 O5' U B1237 29.290 -77.924 1.107 1.00 40.76 O
TER
Atoms:
OP1: (29.980,-88.321,2.423)
OP2: (27.643,-88.647,1.451)
C3': (29.609,-84.016,1.943)
C1': (28.454,-83.063,0.120)
C5': (30.253,-86.038,0.493)
O4': (29.261,-84.059,-0.423)
C8: (26.021,-83.521,-0.443)
O2': (27.883,-82.336,2.347)
C6: (25.450,-81.675,-3.380)
C5: (25.818,-82.360,-2.210)
C4: (27.107,-82.231,-1.782)
P: (29.028,-88.172,1.279)
C4': (30.146,-84.548,0.608)
C2': (28.248,-83.449,1.576)
C2: (27.591,-80.904,-3.438)
N1: (26.379,-80.950,-3.988)
N3: (28.057,-81.495,-2.347)
N6: (24.257,-81.681,-3.953)
N7: (25.139,-83.184,-1.345)
N9: (27.233,-82.982,-0.664)
O5': (29.030,-86.680,0.778)
O3': (30.428,-82.948,2.404)
OP2: (27.643,-88.647,1.451)
C3': (29.609,-84.016,1.943)
C1': (28.454,-83.063,0.120)
C5': (30.253,-86.038,0.493)
O4': (29.261,-84.059,-0.423)
C8: (26.021,-83.521,-0.443)
O2': (27.883,-82.336,2.347)
C6: (25.450,-81.675,-3.380)
C5: (25.818,-82.360,-2.210)
C4: (27.107,-82.231,-1.782)
P: (29.028,-88.172,1.279)
C4': (30.146,-84.548,0.608)
C2': (28.248,-83.449,1.576)
C2: (27.591,-80.904,-3.438)
N1: (26.379,-80.950,-3.988)
N3: (28.057,-81.495,-2.347)
N6: (24.257,-81.681,-3.953)
N7: (25.139,-83.184,-1.345)
N9: (27.233,-82.982,-0.664)
O5': (29.030,-86.680,0.778)
O3': (30.428,-82.948,2.404)
OP1: (32.910,-83.297,2.382)
OP2: (31.414,-84.411,4.159)
C3': (30.753,-78.948,3.735)
C1': (32.698,-78.442,5.012)
C5': (30.628,-81.317,4.678)
O4': (32.182,-79.666,5.455)
C8: (34.721,-79.837,4.388)
O2': (30.991,-76.794,4.800)
C6: (36.814,-77.742,2.527)
C5: (35.872,-78.460,3.284)
C4: (34.730,-77.797,3.672)
P: (31.726,-83.236,3.310)
C4': (30.853,-79.860,4.944)
C2': (31.686,-77.792,4.075)
C2: (35.381,-75.984,2.678)
N1: (36.535,-76.473,2.226)
N3: (34.408,-76.543,3.399)
N6: (37.966,-78.235,2.089)
N7: (35.857,-79.763,3.744)
N9: (33.986,-78.687,4.365)
O5': (31.805,-81.936,4.213)
O3': (29.422,-78.528,3.507)
OP2: (31.414,-84.411,4.159)
C3': (30.753,-78.948,3.735)
C1': (32.698,-78.442,5.012)
C5': (30.628,-81.317,4.678)
O4': (32.182,-79.666,5.455)
C8: (34.721,-79.837,4.388)
O2': (30.991,-76.794,4.800)
C6: (36.814,-77.742,2.527)
C5: (35.872,-78.460,3.284)
C4: (34.730,-77.797,3.672)
P: (31.726,-83.236,3.310)
C4': (30.853,-79.860,4.944)
C2': (31.686,-77.792,4.075)
C2: (35.381,-75.984,2.678)
N1: (36.535,-76.473,2.226)
N3: (34.408,-76.543,3.399)
N6: (37.966,-78.235,2.089)
N7: (35.857,-79.763,3.744)
N9: (33.986,-78.687,4.365)
O5': (31.805,-81.936,4.213)
O3': (29.422,-78.528,3.507)
Image (generated by PyMOL):