Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OHJ:A1235:A1236
Extra
PDB:
ATOM 1 O3' G A1234 29.899 -88.836 0.161 1.00 55.75 O
ATOM 2 P A A1235 29.233 -88.005 1.381 1.00 56.67 P
ATOM 3 OP1 A A1235 30.126 -88.167 2.574 1.00 40.16 O
ATOM 4 OP2 A A1235 27.807 -88.420 1.495 1.00 50.64 O
ATOM 5 O5' A A1235 29.310 -86.533 0.860 1.00 62.15 O
ATOM 6 C5' A A1235 30.552 -85.943 0.572 1.00 62.14 C
ATOM 7 C4' A A1235 30.476 -84.456 0.701 1.00 58.24 C
ATOM 8 O4' A A1235 29.582 -83.943 -0.314 1.00 58.94 O
ATOM 9 C3' A A1235 29.938 -83.944 2.043 1.00 50.16 C
ATOM 10 O3' A A1235 30.711 -82.846 2.477 1.00 57.00 O
ATOM 11 C2' A A1235 28.557 -83.432 1.702 1.00 43.56 C
ATOM 12 O2' A A1235 28.148 -82.362 2.505 1.00 60.00 O
ATOM 13 C1' A A1235 28.746 -82.983 0.274 1.00 50.04 C
ATOM 14 N9 A A1235 27.505 -82.885 -0.491 1.00 39.34 N
ATOM 15 C8 A A1235 26.289 -83.438 -0.239 1.00 40.89 C
ATOM 16 N7 A A1235 25.386 -83.084 -1.110 1.00 43.65 N
ATOM 17 C5 A A1235 26.032 -82.227 -1.976 1.00 38.29 C
ATOM 18 C6 A A1235 25.630 -81.520 -3.125 1.00 34.51 C
ATOM 19 N6 A A1235 24.423 -81.509 -3.672 1.00 33.49 N
ATOM 20 N1 A A1235 26.549 -80.777 -3.738 1.00 38.90 N
ATOM 21 C2 A A1235 27.783 -80.742 -3.231 1.00 36.77 C
ATOM 22 N3 A A1235 28.286 -81.352 -2.169 1.00 38.53 N
ATOM 23 C4 A A1235 27.339 -82.096 -1.588 1.00 38.60 C
ATOM 24 P A A1236 32.060 -83.070 3.308 1.00 47.90 P
ATOM 25 OP1 A A1236 33.193 -82.960 2.323 1.00 39.30 O
ATOM 26 OP2 A A1236 31.908 -84.330 4.100 1.00 40.68 O
ATOM 27 O5' A A1236 32.043 -81.818 4.279 1.00 32.66 O
TER
ATOM 1 O3' A B1235 30.711 -82.846 2.477 1.00 57.00 O
ATOM 2 P A B1236 32.060 -83.070 3.308 1.00 47.90 P
ATOM 3 OP1 A B1236 33.193 -82.960 2.323 1.00 39.30 O
ATOM 4 OP2 A B1236 31.908 -84.330 4.100 1.00 40.68 O
ATOM 5 O5' A B1236 32.043 -81.818 4.279 1.00 32.66 O
ATOM 6 C5' A B1236 30.823 -81.200 4.610 1.00 33.00 C
ATOM 7 C4' A B1236 31.026 -79.764 4.985 1.00 37.14 C
ATOM 8 O4' A B1236 32.336 -79.593 5.558 1.00 36.74 O
ATOM 9 C3' A B1236 30.956 -78.774 3.837 1.00 40.46 C
ATOM 10 O3' A B1236 29.624 -78.346 3.593 1.00 41.42 O
ATOM 11 C2' A B1236 31.885 -77.642 4.266 1.00 32.97 C
ATOM 12 O2' A B1236 31.185 -76.691 5.050 1.00 33.37 O
ATOM 13 C1' A B1236 32.886 -78.361 5.163 1.00 34.87 C
ATOM 14 N9 A B1236 34.177 -78.609 4.491 1.00 38.48 N
ATOM 15 C8 A B1236 34.933 -79.764 4.489 1.00 36.22 C
ATOM 16 N7 A B1236 36.060 -79.675 3.829 1.00 28.30 N
ATOM 17 C5 A B1236 36.054 -78.364 3.381 1.00 30.83 C
ATOM 18 C6 A B1236 36.969 -77.621 2.611 1.00 33.96 C
ATOM 19 N6 A B1236 38.133 -78.077 2.135 1.00 31.52 N
ATOM 20 N1 A B1236 36.652 -76.345 2.328 1.00 38.82 N
ATOM 21 C2 A B1236 35.503 -75.855 2.810 1.00 40.52 C
ATOM 22 N3 A B1236 34.560 -76.441 3.541 1.00 38.19 N
ATOM 23 C4 A B1236 34.908 -77.702 3.790 1.00 34.11 C
ATOM 24 P U B1237 28.845 -78.823 2.277 1.00 32.66 P
ATOM 25 OP1 U B1237 27.402 -78.560 2.503 1.00 48.77 O
ATOM 26 OP2 U B1237 29.285 -80.208 1.976 1.00 43.40 O
ATOM 27 O5' U B1237 29.400 -77.823 1.194 1.00 36.97 O
TER
ATOM 2 P A A1235 29.233 -88.005 1.381 1.00 56.67 P
ATOM 3 OP1 A A1235 30.126 -88.167 2.574 1.00 40.16 O
ATOM 4 OP2 A A1235 27.807 -88.420 1.495 1.00 50.64 O
ATOM 5 O5' A A1235 29.310 -86.533 0.860 1.00 62.15 O
ATOM 6 C5' A A1235 30.552 -85.943 0.572 1.00 62.14 C
ATOM 7 C4' A A1235 30.476 -84.456 0.701 1.00 58.24 C
ATOM 8 O4' A A1235 29.582 -83.943 -0.314 1.00 58.94 O
ATOM 9 C3' A A1235 29.938 -83.944 2.043 1.00 50.16 C
ATOM 10 O3' A A1235 30.711 -82.846 2.477 1.00 57.00 O
ATOM 11 C2' A A1235 28.557 -83.432 1.702 1.00 43.56 C
ATOM 12 O2' A A1235 28.148 -82.362 2.505 1.00 60.00 O
ATOM 13 C1' A A1235 28.746 -82.983 0.274 1.00 50.04 C
ATOM 14 N9 A A1235 27.505 -82.885 -0.491 1.00 39.34 N
ATOM 15 C8 A A1235 26.289 -83.438 -0.239 1.00 40.89 C
ATOM 16 N7 A A1235 25.386 -83.084 -1.110 1.00 43.65 N
ATOM 17 C5 A A1235 26.032 -82.227 -1.976 1.00 38.29 C
ATOM 18 C6 A A1235 25.630 -81.520 -3.125 1.00 34.51 C
ATOM 19 N6 A A1235 24.423 -81.509 -3.672 1.00 33.49 N
ATOM 20 N1 A A1235 26.549 -80.777 -3.738 1.00 38.90 N
ATOM 21 C2 A A1235 27.783 -80.742 -3.231 1.00 36.77 C
ATOM 22 N3 A A1235 28.286 -81.352 -2.169 1.00 38.53 N
ATOM 23 C4 A A1235 27.339 -82.096 -1.588 1.00 38.60 C
ATOM 24 P A A1236 32.060 -83.070 3.308 1.00 47.90 P
ATOM 25 OP1 A A1236 33.193 -82.960 2.323 1.00 39.30 O
ATOM 26 OP2 A A1236 31.908 -84.330 4.100 1.00 40.68 O
ATOM 27 O5' A A1236 32.043 -81.818 4.279 1.00 32.66 O
TER
ATOM 1 O3' A B1235 30.711 -82.846 2.477 1.00 57.00 O
ATOM 2 P A B1236 32.060 -83.070 3.308 1.00 47.90 P
ATOM 3 OP1 A B1236 33.193 -82.960 2.323 1.00 39.30 O
ATOM 4 OP2 A B1236 31.908 -84.330 4.100 1.00 40.68 O
ATOM 5 O5' A B1236 32.043 -81.818 4.279 1.00 32.66 O
ATOM 6 C5' A B1236 30.823 -81.200 4.610 1.00 33.00 C
ATOM 7 C4' A B1236 31.026 -79.764 4.985 1.00 37.14 C
ATOM 8 O4' A B1236 32.336 -79.593 5.558 1.00 36.74 O
ATOM 9 C3' A B1236 30.956 -78.774 3.837 1.00 40.46 C
ATOM 10 O3' A B1236 29.624 -78.346 3.593 1.00 41.42 O
ATOM 11 C2' A B1236 31.885 -77.642 4.266 1.00 32.97 C
ATOM 12 O2' A B1236 31.185 -76.691 5.050 1.00 33.37 O
ATOM 13 C1' A B1236 32.886 -78.361 5.163 1.00 34.87 C
ATOM 14 N9 A B1236 34.177 -78.609 4.491 1.00 38.48 N
ATOM 15 C8 A B1236 34.933 -79.764 4.489 1.00 36.22 C
ATOM 16 N7 A B1236 36.060 -79.675 3.829 1.00 28.30 N
ATOM 17 C5 A B1236 36.054 -78.364 3.381 1.00 30.83 C
ATOM 18 C6 A B1236 36.969 -77.621 2.611 1.00 33.96 C
ATOM 19 N6 A B1236 38.133 -78.077 2.135 1.00 31.52 N
ATOM 20 N1 A B1236 36.652 -76.345 2.328 1.00 38.82 N
ATOM 21 C2 A B1236 35.503 -75.855 2.810 1.00 40.52 C
ATOM 22 N3 A B1236 34.560 -76.441 3.541 1.00 38.19 N
ATOM 23 C4 A B1236 34.908 -77.702 3.790 1.00 34.11 C
ATOM 24 P U B1237 28.845 -78.823 2.277 1.00 32.66 P
ATOM 25 OP1 U B1237 27.402 -78.560 2.503 1.00 48.77 O
ATOM 26 OP2 U B1237 29.285 -80.208 1.976 1.00 43.40 O
ATOM 27 O5' U B1237 29.400 -77.823 1.194 1.00 36.97 O
TER
Atoms:
OP1: (30.126,-88.167,2.574)
OP2: (27.807,-88.420,1.495)
C3': (29.938,-83.944,2.043)
C1': (28.746,-82.983,0.274)
C5': (30.552,-85.943,0.572)
O4': (29.582,-83.943,-0.314)
C8: (26.289,-83.438,-0.239)
O2': (28.148,-82.362,2.505)
C6: (25.630,-81.520,-3.125)
C5: (26.032,-82.227,-1.976)
C4: (27.339,-82.096,-1.588)
P: (29.233,-88.005,1.381)
C4': (30.476,-84.456,0.701)
C2': (28.557,-83.432,1.702)
C2: (27.783,-80.742,-3.231)
N1: (26.549,-80.777,-3.738)
N3: (28.286,-81.352,-2.169)
N6: (24.423,-81.509,-3.672)
N7: (25.386,-83.084,-1.110)
N9: (27.505,-82.885,-0.491)
O5': (29.310,-86.533,0.860)
O3': (30.711,-82.846,2.477)
OP2: (27.807,-88.420,1.495)
C3': (29.938,-83.944,2.043)
C1': (28.746,-82.983,0.274)
C5': (30.552,-85.943,0.572)
O4': (29.582,-83.943,-0.314)
C8: (26.289,-83.438,-0.239)
O2': (28.148,-82.362,2.505)
C6: (25.630,-81.520,-3.125)
C5: (26.032,-82.227,-1.976)
C4: (27.339,-82.096,-1.588)
P: (29.233,-88.005,1.381)
C4': (30.476,-84.456,0.701)
C2': (28.557,-83.432,1.702)
C2: (27.783,-80.742,-3.231)
N1: (26.549,-80.777,-3.738)
N3: (28.286,-81.352,-2.169)
N6: (24.423,-81.509,-3.672)
N7: (25.386,-83.084,-1.110)
N9: (27.505,-82.885,-0.491)
O5': (29.310,-86.533,0.860)
O3': (30.711,-82.846,2.477)
OP1: (33.193,-82.960,2.323)
OP2: (31.908,-84.330,4.100)
C3': (30.956,-78.774,3.837)
C1': (32.886,-78.361,5.163)
C5': (30.823,-81.200,4.610)
O4': (32.336,-79.593,5.558)
C8: (34.933,-79.764,4.489)
O2': (31.185,-76.691,5.050)
C6: (36.969,-77.621,2.611)
C5: (36.054,-78.364,3.381)
C4: (34.908,-77.702,3.790)
P: (32.060,-83.070,3.308)
C4': (31.026,-79.764,4.985)
C2': (31.885,-77.642,4.266)
C2: (35.503,-75.855,2.810)
N1: (36.652,-76.345,2.328)
N3: (34.560,-76.441,3.541)
N6: (38.133,-78.077,2.135)
N7: (36.060,-79.675,3.829)
N9: (34.177,-78.609,4.491)
O5': (32.043,-81.818,4.279)
O3': (29.624,-78.346,3.593)
OP2: (31.908,-84.330,4.100)
C3': (30.956,-78.774,3.837)
C1': (32.886,-78.361,5.163)
C5': (30.823,-81.200,4.610)
O4': (32.336,-79.593,5.558)
C8: (34.933,-79.764,4.489)
O2': (31.185,-76.691,5.050)
C6: (36.969,-77.621,2.611)
C5: (36.054,-78.364,3.381)
C4: (34.908,-77.702,3.790)
P: (32.060,-83.070,3.308)
C4': (31.026,-79.764,4.985)
C2': (31.885,-77.642,4.266)
C2: (35.503,-75.855,2.810)
N1: (36.652,-76.345,2.328)
N3: (34.560,-76.441,3.541)
N6: (38.133,-78.077,2.135)
N7: (36.060,-79.675,3.829)
N9: (34.177,-78.609,4.491)
O5': (32.043,-81.818,4.279)
O3': (29.624,-78.346,3.593)
Image (generated by PyMOL):