Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E13:E12
Extra
PDB:
ATOM 1 O3' C A 12 -5.335 -17.150 19.921 1.00 22.20 O
ATOM 2 P A A 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 3 OP1 A A 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 4 OP2 A A 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 5 O5' A A 13 -7.172 -16.812 18.197 1.00 21.22 O
ATOM 6 C5' A A 13 -7.713 -16.723 16.889 1.00 19.57 C
ATOM 7 C4' A A 13 -9.214 -16.811 16.945 1.00 18.43 C
ATOM 8 O4' A A 13 -9.610 -18.092 17.509 1.00 16.61 O
ATOM 9 C3' A A 13 -9.900 -15.761 17.806 1.00 16.21 C
ATOM 10 O3' A A 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 11 C2' A A 13 -10.046 -16.472 19.139 1.00 14.69 C
ATOM 12 O2' A A 13 -11.099 -15.910 19.884 1.00 14.61 O
ATOM 13 C1' A A 13 -10.401 -17.875 18.659 1.00 13.90 C
ATOM 14 N9 A A 13 -10.161 -18.988 19.574 1.00 10.30 N
ATOM 15 C8 A A 13 -8.965 -19.574 19.886 1.00 9.30 C
ATOM 16 N7 A A 13 -9.084 -20.647 20.632 1.00 9.45 N
ATOM 17 C5 A A 13 -10.448 -20.750 20.852 1.00 5.68 C
ATOM 18 C6 A A 13 -11.221 -21.691 21.547 1.00 8.08 C
ATOM 19 N6 A A 13 -10.712 -22.763 22.168 1.00 4.89 N
ATOM 20 N1 A A 13 -12.559 -21.497 21.576 1.00 8.60 N
ATOM 21 C2 A A 13 -13.070 -20.430 20.939 1.00 7.59 C
ATOM 22 N3 A A 13 -12.444 -19.487 20.246 1.00 5.32 N
ATOM 23 C4 A A 13 -11.120 -19.712 20.236 1.00 6.82 C
ATOM 24 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 25 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 26 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 27 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
TER
ATOM 1 O3' G B 11 -9.375 -13.007 22.137 1.00 21.17 O
ATOM 2 P C B 12 -8.402 -13.503 20.972 1.00 19.61 P
ATOM 3 OP1 C B 12 -7.378 -12.470 20.696 1.00 21.33 O
ATOM 4 OP2 C B 12 -9.341 -13.906 19.899 1.00 24.26 O
ATOM 5 O5' C B 12 -7.704 -14.788 21.595 1.00 16.92 O
ATOM 6 C5' C B 12 -6.314 -14.824 21.843 1.00 15.52 C
ATOM 7 C4' C B 12 -5.892 -16.243 22.086 1.00 18.31 C
ATOM 8 O4' C B 12 -6.571 -16.746 23.272 1.00 19.94 O
ATOM 9 C3' C B 12 -6.286 -17.208 20.980 1.00 20.81 C
ATOM 10 O3' C B 12 -5.335 -17.150 19.921 1.00 22.20 O
ATOM 11 C2' C B 12 -6.386 -18.547 21.718 1.00 21.14 C
ATOM 12 O2' C B 12 -5.171 -19.244 21.902 1.00 22.72 O
ATOM 13 C1' C B 12 -6.927 -18.106 23.085 1.00 18.50 C
ATOM 14 N1 C B 12 -8.388 -18.208 23.193 1.00 17.00 N
ATOM 15 C2 C B 12 -8.933 -19.324 23.821 1.00 17.97 C
ATOM 16 O2 C B 12 -8.171 -20.197 24.249 1.00 18.04 O
ATOM 17 N3 C B 12 -10.274 -19.429 23.937 1.00 16.52 N
ATOM 18 C4 C B 12 -11.060 -18.476 23.435 1.00 14.23 C
ATOM 19 N4 C B 12 -12.371 -18.628 23.562 1.00 15.08 N
ATOM 20 C5 C B 12 -10.531 -17.327 22.780 1.00 12.98 C
ATOM 21 C6 C B 12 -9.202 -17.231 22.687 1.00 14.01 C
ATOM 22 P A B 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 23 OP1 A B 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 24 OP2 A B 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 25 O5' A B 13 -7.172 -16.812 18.197 1.00 21.22 O
TER
ATOM 2 P A A 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 3 OP1 A A 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 4 OP2 A A 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 5 O5' A A 13 -7.172 -16.812 18.197 1.00 21.22 O
ATOM 6 C5' A A 13 -7.713 -16.723 16.889 1.00 19.57 C
ATOM 7 C4' A A 13 -9.214 -16.811 16.945 1.00 18.43 C
ATOM 8 O4' A A 13 -9.610 -18.092 17.509 1.00 16.61 O
ATOM 9 C3' A A 13 -9.900 -15.761 17.806 1.00 16.21 C
ATOM 10 O3' A A 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 11 C2' A A 13 -10.046 -16.472 19.139 1.00 14.69 C
ATOM 12 O2' A A 13 -11.099 -15.910 19.884 1.00 14.61 O
ATOM 13 C1' A A 13 -10.401 -17.875 18.659 1.00 13.90 C
ATOM 14 N9 A A 13 -10.161 -18.988 19.574 1.00 10.30 N
ATOM 15 C8 A A 13 -8.965 -19.574 19.886 1.00 9.30 C
ATOM 16 N7 A A 13 -9.084 -20.647 20.632 1.00 9.45 N
ATOM 17 C5 A A 13 -10.448 -20.750 20.852 1.00 5.68 C
ATOM 18 C6 A A 13 -11.221 -21.691 21.547 1.00 8.08 C
ATOM 19 N6 A A 13 -10.712 -22.763 22.168 1.00 4.89 N
ATOM 20 N1 A A 13 -12.559 -21.497 21.576 1.00 8.60 N
ATOM 21 C2 A A 13 -13.070 -20.430 20.939 1.00 7.59 C
ATOM 22 N3 A A 13 -12.444 -19.487 20.246 1.00 5.32 N
ATOM 23 C4 A A 13 -11.120 -19.712 20.236 1.00 6.82 C
ATOM 24 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 25 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 26 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 27 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
TER
ATOM 1 O3' G B 11 -9.375 -13.007 22.137 1.00 21.17 O
ATOM 2 P C B 12 -8.402 -13.503 20.972 1.00 19.61 P
ATOM 3 OP1 C B 12 -7.378 -12.470 20.696 1.00 21.33 O
ATOM 4 OP2 C B 12 -9.341 -13.906 19.899 1.00 24.26 O
ATOM 5 O5' C B 12 -7.704 -14.788 21.595 1.00 16.92 O
ATOM 6 C5' C B 12 -6.314 -14.824 21.843 1.00 15.52 C
ATOM 7 C4' C B 12 -5.892 -16.243 22.086 1.00 18.31 C
ATOM 8 O4' C B 12 -6.571 -16.746 23.272 1.00 19.94 O
ATOM 9 C3' C B 12 -6.286 -17.208 20.980 1.00 20.81 C
ATOM 10 O3' C B 12 -5.335 -17.150 19.921 1.00 22.20 O
ATOM 11 C2' C B 12 -6.386 -18.547 21.718 1.00 21.14 C
ATOM 12 O2' C B 12 -5.171 -19.244 21.902 1.00 22.72 O
ATOM 13 C1' C B 12 -6.927 -18.106 23.085 1.00 18.50 C
ATOM 14 N1 C B 12 -8.388 -18.208 23.193 1.00 17.00 N
ATOM 15 C2 C B 12 -8.933 -19.324 23.821 1.00 17.97 C
ATOM 16 O2 C B 12 -8.171 -20.197 24.249 1.00 18.04 O
ATOM 17 N3 C B 12 -10.274 -19.429 23.937 1.00 16.52 N
ATOM 18 C4 C B 12 -11.060 -18.476 23.435 1.00 14.23 C
ATOM 19 N4 C B 12 -12.371 -18.628 23.562 1.00 15.08 N
ATOM 20 C5 C B 12 -10.531 -17.327 22.780 1.00 12.98 C
ATOM 21 C6 C B 12 -9.202 -17.231 22.687 1.00 14.01 C
ATOM 22 P A B 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 23 OP1 A B 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 24 OP2 A B 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 25 O5' A B 13 -7.172 -16.812 18.197 1.00 21.22 O
TER
Atoms:
OP1: (-6.003,-18.995,18.453)
OP2: (-4.836,-16.926,17.422)
C3': (-9.900,-15.761,17.806)
C1': (-10.401,-17.875,18.659)
C5': (-7.713,-16.723,16.889)
O4': (-9.610,-18.092,17.509)
C8: (-8.965,-19.574,19.886)
O2': (-11.099,-15.910,19.884)
C6: (-11.221,-21.691,21.547)
C5: (-10.448,-20.750,20.852)
C4: (-11.120,-19.712,20.236)
P: (-5.775,-17.525,18.422)
C4': (-9.214,-16.811,16.945)
C2': (-10.046,-16.472,19.139)
C2: (-13.070,-20.430,20.939)
N1: (-12.559,-21.497,21.576)
N3: (-12.444,-19.487,20.246)
N6: (-10.712,-22.763,22.168)
N7: (-9.084,-20.647,20.632)
N9: (-10.161,-18.988,19.574)
O5': (-7.172,-16.812,18.197)
O3': (-11.191,-15.608,17.268)
OP2: (-4.836,-16.926,17.422)
C3': (-9.900,-15.761,17.806)
C1': (-10.401,-17.875,18.659)
C5': (-7.713,-16.723,16.889)
O4': (-9.610,-18.092,17.509)
C8: (-8.965,-19.574,19.886)
O2': (-11.099,-15.910,19.884)
C6: (-11.221,-21.691,21.547)
C5: (-10.448,-20.750,20.852)
C4: (-11.120,-19.712,20.236)
P: (-5.775,-17.525,18.422)
C4': (-9.214,-16.811,16.945)
C2': (-10.046,-16.472,19.139)
C2: (-13.070,-20.430,20.939)
N1: (-12.559,-21.497,21.576)
N3: (-12.444,-19.487,20.246)
N6: (-10.712,-22.763,22.168)
N7: (-9.084,-20.647,20.632)
N9: (-10.161,-18.988,19.574)
O5': (-7.172,-16.812,18.197)
O3': (-11.191,-15.608,17.268)
C2: (-8.933,-19.324,23.821)
OP1: (-7.378,-12.470,20.696)
OP2: (-9.341,-13.906,19.899)
C4: (-11.060,-18.476,23.435)
O5': (-7.704,-14.788,21.595)
C3': (-6.286,-17.208,20.980)
C1': (-6.927,-18.106,23.085)
O4': (-6.571,-16.746,23.272)
C5': (-6.314,-14.824,21.843)
P: (-8.402,-13.503,20.972)
O2: (-8.171,-20.197,24.249)
C4': (-5.892,-16.243,22.086)
C2': (-6.386,-18.547,21.718)
O2': (-5.171,-19.244,21.902)
N1: (-8.388,-18.208,23.193)
N3: (-10.274,-19.429,23.937)
N4: (-12.371,-18.628,23.562)
C6: (-9.202,-17.231,22.687)
C5: (-10.531,-17.327,22.780)
O3': (-5.335,-17.150,19.921)
OP1: (-7.378,-12.470,20.696)
OP2: (-9.341,-13.906,19.899)
C4: (-11.060,-18.476,23.435)
O5': (-7.704,-14.788,21.595)
C3': (-6.286,-17.208,20.980)
C1': (-6.927,-18.106,23.085)
O4': (-6.571,-16.746,23.272)
C5': (-6.314,-14.824,21.843)
P: (-8.402,-13.503,20.972)
O2: (-8.171,-20.197,24.249)
C4': (-5.892,-16.243,22.086)
C2': (-6.386,-18.547,21.718)
O2': (-5.171,-19.244,21.902)
N1: (-8.388,-18.208,23.193)
N3: (-10.274,-19.429,23.937)
N4: (-12.371,-18.628,23.562)
C6: (-9.202,-17.231,22.687)
C5: (-10.531,-17.327,22.780)
O3': (-5.335,-17.150,19.921)
Image (generated by PyMOL):