Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C13:C30
Extra
PDB:
ATOM 1 O3' C A 12 -24.521 -33.954 -9.425 1.00 22.06 O
ATOM 2 P A A 13 -23.374 -33.393 -8.473 1.00 23.71 P
ATOM 3 OP1 A A 13 -23.571 -31.920 -8.450 1.00 23.79 O
ATOM 4 OP2 A A 13 -22.073 -33.963 -8.900 1.00 23.09 O
ATOM 5 O5' A A 13 -23.735 -34.002 -7.051 1.00 21.11 O
ATOM 6 C5' A A 13 -22.764 -34.080 -6.014 1.00 17.08 C
ATOM 7 C4' A A 13 -23.454 -34.161 -4.676 1.00 15.52 C
ATOM 8 O4' A A 13 -24.152 -32.916 -4.430 1.00 16.56 O
ATOM 9 C3' A A 13 -24.519 -35.242 -4.554 1.00 12.17 C
ATOM 10 O3' A A 13 -24.658 -35.497 -3.174 1.00 8.19 O
ATOM 11 C2' A A 13 -25.768 -34.509 -5.001 1.00 12.79 C
ATOM 12 O2' A A 13 -26.927 -35.117 -4.508 1.00 15.59 O
ATOM 13 C1' A A 13 -25.540 -33.166 -4.319 1.00 14.53 C
ATOM 14 N9 A A 13 -26.229 -32.006 -4.873 1.00 15.07 N
ATOM 15 C8 A A 13 -25.941 -31.338 -6.037 1.00 17.54 C
ATOM 16 N7 A A 13 -26.646 -30.245 -6.205 1.00 18.76 N
ATOM 17 C5 A A 13 -27.473 -30.209 -5.091 1.00 15.01 C
ATOM 18 C6 A A 13 -28.423 -29.279 -4.657 1.00 14.85 C
ATOM 19 N6 A A 13 -28.688 -28.141 -5.302 1.00 18.27 N
ATOM 20 N1 A A 13 -29.084 -29.544 -3.513 1.00 13.15 N
ATOM 21 C2 A A 13 -28.776 -30.660 -2.839 1.00 15.25 C
ATOM 22 N3 A A 13 -27.878 -31.600 -3.130 1.00 14.25 N
ATOM 23 C4 A A 13 -27.253 -31.308 -4.282 1.00 14.62 C
ATOM 24 P U A 14 -24.596 -36.997 -2.620 1.00 13.76 P
ATOM 25 OP1 U A 14 -23.295 -37.600 -3.016 1.00 12.03 O
ATOM 26 OP2 U A 14 -25.868 -37.698 -2.950 1.00 11.94 O
ATOM 27 O5' U A 14 -24.553 -36.785 -1.041 1.00 17.88 O
TER
ATOM 1 O3' G B 29 -34.177 -23.569 2.495 1.00 16.79 O
ATOM 2 P A B 30 -35.501 -22.738 2.815 1.00 19.67 P
ATOM 3 OP1 A B 30 -35.329 -22.103 4.142 1.00 22.70 O
ATOM 4 OP2 A B 30 -36.688 -23.608 2.556 1.00 22.88 O
ATOM 5 O5' A B 30 -35.482 -21.622 1.694 1.00 19.31 O
ATOM 6 C5' A B 30 -35.946 -21.946 0.401 1.00 21.21 C
ATOM 7 C4' A B 30 -35.036 -21.384 -0.656 1.00 21.01 C
ATOM 8 O4' A B 30 -33.660 -21.760 -0.416 1.00 19.81 O
ATOM 9 C3' A B 30 -35.335 -21.915 -2.042 1.00 22.45 C
ATOM 10 O3' A B 30 -36.407 -21.205 -2.610 1.00 27.11 O
ATOM 11 C2' A B 30 -34.024 -21.710 -2.772 1.00 20.84 C
ATOM 12 O2' A B 30 -33.896 -20.383 -3.238 1.00 19.75 O
ATOM 13 C1' A B 30 -33.019 -22.020 -1.659 1.00 20.34 C
ATOM 14 N9 A B 30 -32.586 -23.415 -1.640 1.00 20.33 N
ATOM 15 C8 A B 30 -32.942 -24.371 -0.719 1.00 21.64 C
ATOM 16 N7 A B 30 -32.389 -25.542 -0.926 1.00 19.86 N
ATOM 17 C5 A B 30 -31.622 -25.348 -2.065 1.00 18.44 C
ATOM 18 C6 A B 30 -30.790 -26.211 -2.798 1.00 15.68 C
ATOM 19 N6 A B 30 -30.599 -27.491 -2.488 1.00 12.01 N
ATOM 20 N1 A B 30 -30.157 -25.706 -3.875 1.00 16.97 N
ATOM 21 C2 A B 30 -30.363 -24.416 -4.193 1.00 20.91 C
ATOM 22 N3 A B 30 -31.133 -23.503 -3.587 1.00 18.83 N
ATOM 23 C4 A B 30 -31.738 -24.040 -2.518 1.00 19.10 C
ATOM 24 P G B 31 -37.163 -21.830 -3.857 1.00 32.39 P
ATOM 25 OP1 G B 31 -38.226 -20.876 -4.269 1.00 35.61 O
ATOM 26 OP2 G B 31 -37.520 -23.228 -3.505 1.00 29.23 O
ATOM 27 O5' G B 31 -36.022 -21.853 -4.959 1.00 30.95 O
TER
ATOM 2 P A A 13 -23.374 -33.393 -8.473 1.00 23.71 P
ATOM 3 OP1 A A 13 -23.571 -31.920 -8.450 1.00 23.79 O
ATOM 4 OP2 A A 13 -22.073 -33.963 -8.900 1.00 23.09 O
ATOM 5 O5' A A 13 -23.735 -34.002 -7.051 1.00 21.11 O
ATOM 6 C5' A A 13 -22.764 -34.080 -6.014 1.00 17.08 C
ATOM 7 C4' A A 13 -23.454 -34.161 -4.676 1.00 15.52 C
ATOM 8 O4' A A 13 -24.152 -32.916 -4.430 1.00 16.56 O
ATOM 9 C3' A A 13 -24.519 -35.242 -4.554 1.00 12.17 C
ATOM 10 O3' A A 13 -24.658 -35.497 -3.174 1.00 8.19 O
ATOM 11 C2' A A 13 -25.768 -34.509 -5.001 1.00 12.79 C
ATOM 12 O2' A A 13 -26.927 -35.117 -4.508 1.00 15.59 O
ATOM 13 C1' A A 13 -25.540 -33.166 -4.319 1.00 14.53 C
ATOM 14 N9 A A 13 -26.229 -32.006 -4.873 1.00 15.07 N
ATOM 15 C8 A A 13 -25.941 -31.338 -6.037 1.00 17.54 C
ATOM 16 N7 A A 13 -26.646 -30.245 -6.205 1.00 18.76 N
ATOM 17 C5 A A 13 -27.473 -30.209 -5.091 1.00 15.01 C
ATOM 18 C6 A A 13 -28.423 -29.279 -4.657 1.00 14.85 C
ATOM 19 N6 A A 13 -28.688 -28.141 -5.302 1.00 18.27 N
ATOM 20 N1 A A 13 -29.084 -29.544 -3.513 1.00 13.15 N
ATOM 21 C2 A A 13 -28.776 -30.660 -2.839 1.00 15.25 C
ATOM 22 N3 A A 13 -27.878 -31.600 -3.130 1.00 14.25 N
ATOM 23 C4 A A 13 -27.253 -31.308 -4.282 1.00 14.62 C
ATOM 24 P U A 14 -24.596 -36.997 -2.620 1.00 13.76 P
ATOM 25 OP1 U A 14 -23.295 -37.600 -3.016 1.00 12.03 O
ATOM 26 OP2 U A 14 -25.868 -37.698 -2.950 1.00 11.94 O
ATOM 27 O5' U A 14 -24.553 -36.785 -1.041 1.00 17.88 O
TER
ATOM 1 O3' G B 29 -34.177 -23.569 2.495 1.00 16.79 O
ATOM 2 P A B 30 -35.501 -22.738 2.815 1.00 19.67 P
ATOM 3 OP1 A B 30 -35.329 -22.103 4.142 1.00 22.70 O
ATOM 4 OP2 A B 30 -36.688 -23.608 2.556 1.00 22.88 O
ATOM 5 O5' A B 30 -35.482 -21.622 1.694 1.00 19.31 O
ATOM 6 C5' A B 30 -35.946 -21.946 0.401 1.00 21.21 C
ATOM 7 C4' A B 30 -35.036 -21.384 -0.656 1.00 21.01 C
ATOM 8 O4' A B 30 -33.660 -21.760 -0.416 1.00 19.81 O
ATOM 9 C3' A B 30 -35.335 -21.915 -2.042 1.00 22.45 C
ATOM 10 O3' A B 30 -36.407 -21.205 -2.610 1.00 27.11 O
ATOM 11 C2' A B 30 -34.024 -21.710 -2.772 1.00 20.84 C
ATOM 12 O2' A B 30 -33.896 -20.383 -3.238 1.00 19.75 O
ATOM 13 C1' A B 30 -33.019 -22.020 -1.659 1.00 20.34 C
ATOM 14 N9 A B 30 -32.586 -23.415 -1.640 1.00 20.33 N
ATOM 15 C8 A B 30 -32.942 -24.371 -0.719 1.00 21.64 C
ATOM 16 N7 A B 30 -32.389 -25.542 -0.926 1.00 19.86 N
ATOM 17 C5 A B 30 -31.622 -25.348 -2.065 1.00 18.44 C
ATOM 18 C6 A B 30 -30.790 -26.211 -2.798 1.00 15.68 C
ATOM 19 N6 A B 30 -30.599 -27.491 -2.488 1.00 12.01 N
ATOM 20 N1 A B 30 -30.157 -25.706 -3.875 1.00 16.97 N
ATOM 21 C2 A B 30 -30.363 -24.416 -4.193 1.00 20.91 C
ATOM 22 N3 A B 30 -31.133 -23.503 -3.587 1.00 18.83 N
ATOM 23 C4 A B 30 -31.738 -24.040 -2.518 1.00 19.10 C
ATOM 24 P G B 31 -37.163 -21.830 -3.857 1.00 32.39 P
ATOM 25 OP1 G B 31 -38.226 -20.876 -4.269 1.00 35.61 O
ATOM 26 OP2 G B 31 -37.520 -23.228 -3.505 1.00 29.23 O
ATOM 27 O5' G B 31 -36.022 -21.853 -4.959 1.00 30.95 O
TER
Atoms:
OP1: (-23.571,-31.920,-8.450)
OP2: (-22.073,-33.963,-8.900)
C3': (-24.519,-35.242,-4.554)
C1': (-25.540,-33.166,-4.319)
C5': (-22.764,-34.080,-6.014)
O4': (-24.152,-32.916,-4.430)
C8: (-25.941,-31.338,-6.037)
O2': (-26.927,-35.117,-4.508)
C6: (-28.423,-29.279,-4.657)
C5: (-27.473,-30.209,-5.091)
C4: (-27.253,-31.308,-4.282)
P: (-23.374,-33.393,-8.473)
C4': (-23.454,-34.161,-4.676)
C2': (-25.768,-34.509,-5.001)
C2: (-28.776,-30.660,-2.839)
N1: (-29.084,-29.544,-3.513)
N3: (-27.878,-31.600,-3.130)
N6: (-28.688,-28.141,-5.302)
N7: (-26.646,-30.245,-6.205)
N9: (-26.229,-32.006,-4.873)
O5': (-23.735,-34.002,-7.051)
O3': (-24.658,-35.497,-3.174)
OP2: (-22.073,-33.963,-8.900)
C3': (-24.519,-35.242,-4.554)
C1': (-25.540,-33.166,-4.319)
C5': (-22.764,-34.080,-6.014)
O4': (-24.152,-32.916,-4.430)
C8: (-25.941,-31.338,-6.037)
O2': (-26.927,-35.117,-4.508)
C6: (-28.423,-29.279,-4.657)
C5: (-27.473,-30.209,-5.091)
C4: (-27.253,-31.308,-4.282)
P: (-23.374,-33.393,-8.473)
C4': (-23.454,-34.161,-4.676)
C2': (-25.768,-34.509,-5.001)
C2: (-28.776,-30.660,-2.839)
N1: (-29.084,-29.544,-3.513)
N3: (-27.878,-31.600,-3.130)
N6: (-28.688,-28.141,-5.302)
N7: (-26.646,-30.245,-6.205)
N9: (-26.229,-32.006,-4.873)
O5': (-23.735,-34.002,-7.051)
O3': (-24.658,-35.497,-3.174)
OP1: (-35.329,-22.103,4.142)
OP2: (-36.688,-23.608,2.556)
C3': (-35.335,-21.915,-2.042)
C1': (-33.019,-22.020,-1.659)
C5': (-35.946,-21.946,0.401)
O4': (-33.660,-21.760,-0.416)
C8: (-32.942,-24.371,-0.719)
O2': (-33.896,-20.383,-3.238)
C6: (-30.790,-26.211,-2.798)
C5: (-31.622,-25.348,-2.065)
C4: (-31.738,-24.040,-2.518)
P: (-35.501,-22.738,2.815)
C4': (-35.036,-21.384,-0.656)
C2': (-34.024,-21.710,-2.772)
C2: (-30.363,-24.416,-4.193)
N1: (-30.157,-25.706,-3.875)
N3: (-31.133,-23.503,-3.587)
N6: (-30.599,-27.491,-2.488)
N7: (-32.389,-25.542,-0.926)
N9: (-32.586,-23.415,-1.640)
O5': (-35.482,-21.622,1.694)
O3': (-36.407,-21.205,-2.610)
OP2: (-36.688,-23.608,2.556)
C3': (-35.335,-21.915,-2.042)
C1': (-33.019,-22.020,-1.659)
C5': (-35.946,-21.946,0.401)
O4': (-33.660,-21.760,-0.416)
C8: (-32.942,-24.371,-0.719)
O2': (-33.896,-20.383,-3.238)
C6: (-30.790,-26.211,-2.798)
C5: (-31.622,-25.348,-2.065)
C4: (-31.738,-24.040,-2.518)
P: (-35.501,-22.738,2.815)
C4': (-35.036,-21.384,-0.656)
C2': (-34.024,-21.710,-2.772)
C2: (-30.363,-24.416,-4.193)
N1: (-30.157,-25.706,-3.875)
N3: (-31.133,-23.503,-3.587)
N6: (-30.599,-27.491,-2.488)
N7: (-32.389,-25.542,-0.926)
N9: (-32.586,-23.415,-1.640)
O5': (-35.482,-21.622,1.694)
O3': (-36.407,-21.205,-2.610)
Image (generated by PyMOL):