ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Y39:C26:C38

Extra

PDB:
ATOM 1 O3' A A 25 104.620 88.279 -3.095 1.00 67.49 O
ATOM 2 P A A 26 103.188 88.935 -3.410 1.00 67.59 P
ATOM 3 OP1 A A 26 102.718 88.423 -4.718 1.00 66.18 O
ATOM 4 OP2 A A 26 103.328 90.408 -3.192 1.00 64.34 O
ATOM 5 O5' A A 26 102.255 88.282 -2.298 1.00 66.10 O
ATOM 6 C5' A A 26 101.209 89.018 -1.687 1.00 67.43 C
ATOM 7 C4' A A 26 100.948 88.477 -0.304 1.00 67.19 C
ATOM 8 O4' A A 26 102.056 88.834 0.571 1.00 67.29 O
ATOM 9 C3' A A 26 99.761 89.062 0.436 1.00 66.58 C
ATOM 10 O3' A A 26 98.546 88.483 -0.021 1.00 66.85 O
ATOM 11 C2' A A 26 100.086 88.651 1.863 1.00 65.11 C
ATOM 12 O2' A A 26 99.914 87.261 2.042 1.00 64.71 O
ATOM 13 C1' A A 26 101.583 88.936 1.906 1.00 64.21 C
ATOM 14 N9 A A 26 101.912 90.258 2.440 1.00 61.37 N
ATOM 15 C8 A A 26 102.462 91.348 1.808 1.00 60.10 C
ATOM 16 N7 A A 26 102.661 92.375 2.604 1.00 59.04 N
ATOM 17 C5 A A 26 102.204 91.931 3.840 1.00 58.91 C
ATOM 18 C6 A A 26 102.135 92.544 5.106 1.00 58.10 C
ATOM 19 N6 A A 26 102.547 93.791 5.355 1.00 57.12 N
ATOM 20 N1 A A 26 101.616 91.822 6.122 1.00 57.72 N
ATOM 21 C2 A A 26 101.194 90.577 5.877 1.00 57.86 C
ATOM 22 N3 A A 26 101.204 89.895 4.739 1.00 58.10 N
ATOM 23 C4 A A 26 101.730 90.635 3.748 1.00 59.61 C
ATOM 24 P U A 27 97.307 89.434 -0.384 1.00 66.69 P
ATOM 25 OP1 U A 27 96.213 88.564 -0.890 1.00 66.43 O
ATOM 26 OP2 U A 27 97.817 90.565 -1.213 1.00 65.50 O
ATOM 27 O5' U A 27 96.860 90.062 1.008 1.00 68.67 O
TER

ATOM 1 O3' A B 37 99.980 95.062 9.136 1.00 54.87 O
ATOM 2 P G B 38 101.243 95.879 8.624 1.00 56.89 P
ATOM 3 OP1 G B 38 101.455 95.608 7.177 1.00 56.76 O
ATOM 4 OP2 G B 38 102.328 95.602 9.601 1.00 57.78 O
ATOM 5 O5' G B 38 100.828 97.401 8.817 1.00 56.73 O
ATOM 6 C5' G B 38 99.938 98.031 7.919 1.00 56.83 C
ATOM 7 C4' G B 38 99.640 99.419 8.404 1.00 57.21 C
ATOM 8 O4' G B 38 98.956 99.337 9.675 1.00 57.45 O
ATOM 9 C3' G B 38 100.851 100.296 8.655 1.00 58.36 C
ATOM 10 O3' G B 38 100.422 101.634 8.576 1.00 62.57 O
ATOM 11 C2' G B 38 101.134 100.060 10.127 1.00 57.91 C
ATOM 12 O2' G B 38 101.800 101.164 10.708 1.00 58.09 O
ATOM 13 C1' G B 38 99.713 99.993 10.673 1.00 56.17 C
ATOM 14 N9 G B 38 99.579 99.215 11.895 1.00 53.57 N
ATOM 15 C8 G B 38 99.382 97.858 11.971 1.00 53.03 C
ATOM 16 N7 G B 38 99.250 97.427 13.193 1.00 52.93 N
ATOM 17 C5 G B 38 99.380 98.565 13.972 1.00 53.53 C
ATOM 18 C6 G B 38 99.324 98.713 15.373 1.00 53.99 C
ATOM 19 O6 G B 38 99.135 97.831 16.230 1.00 56.95 O
ATOM 20 N1 G B 38 99.507 100.043 15.757 1.00 51.31 N
ATOM 21 C2 G B 38 99.710 101.090 14.895 1.00 51.30 C
ATOM 22 N2 G B 38 99.854 102.295 15.463 1.00 50.27 N
ATOM 23 N3 G B 38 99.764 100.963 13.570 1.00 51.86 N
ATOM 24 C4 G B 38 99.592 99.680 13.184 1.00 52.89 C
ATOM 25 P U B 39 100.047 102.271 7.162 1.00 65.20 P
ATOM 26 OP1 U B 39 98.568 102.171 7.042 1.00 65.60 O
ATOM 27 OP2 U B 39 100.911 101.621 6.136 1.00 64.17 O
ATOM 28 O5' U B 39 100.458 103.798 7.373 1.00 63.71 O
TER

Atoms:
OP1: (102.718,88.423,-4.718)
OP2: (103.328,90.408,-3.192)
C3': (99.761,89.062,0.436)
C1': (101.583,88.936,1.906)
C5': (101.209,89.018,-1.687)
O4': (102.056,88.834,0.571)
C8: (102.462,91.348,1.808)
O2': (99.914,87.261,2.042)
C6: (102.135,92.544,5.106)
C5: (102.204,91.931,3.840)
C4: (101.730,90.635,3.748)
P: (103.188,88.935,-3.410)
C4': (100.948,88.477,-0.304)
C2': (100.086,88.651,1.863)
C2: (101.194,90.577,5.877)
N1: (101.616,91.822,6.122)
N3: (101.204,89.895,4.739)
N6: (102.547,93.791,5.355)
N7: (102.661,92.375,2.604)
N9: (101.912,90.258,2.440)
O5': (102.255,88.282,-2.298)
O3': (98.546,88.483,-0.021)
OP1: (101.455,95.608,7.177)
OP2: (102.328,95.602,9.601)
C3': (100.851,100.296,8.655)
C1': (99.713,99.993,10.673)
C5': (99.938,98.031,7.919)
O6: (99.135,97.831,16.230)
O4': (98.956,99.337,9.675)
C8: (99.382,97.858,11.971)
C2: (99.710,101.090,14.895)
C6: (99.324,98.713,15.373)
C5: (99.380,98.565,13.972)
C4: (99.592,99.680,13.184)
P: (101.243,95.879,8.624)
C4': (99.640,99.419,8.404)
C2': (101.134,100.060,10.127)
O2': (101.800,101.164,10.708)
N1: (99.507,100.043,15.757)
N2: (99.854,102.295,15.463)
N3: (99.764,100.963,13.570)
N7: (99.250,97.427,13.193)
N9: (99.579,99.215,11.895)
O5': (100.828,97.401,8.817)
O3': (100.422,101.634,8.576)
Image (generated by PyMOL):
PyMOL image
show in jmol