Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E13:E30
Extra
PDB:
ATOM 1 O3' C A 12 -5.335 -17.150 19.921 1.00 22.20 O
ATOM 2 P A A 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 3 OP1 A A 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 4 OP2 A A 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 5 O5' A A 13 -7.172 -16.812 18.197 1.00 21.22 O
ATOM 6 C5' A A 13 -7.713 -16.723 16.889 1.00 19.57 C
ATOM 7 C4' A A 13 -9.214 -16.811 16.945 1.00 18.43 C
ATOM 8 O4' A A 13 -9.610 -18.092 17.509 1.00 16.61 O
ATOM 9 C3' A A 13 -9.900 -15.761 17.806 1.00 16.21 C
ATOM 10 O3' A A 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 11 C2' A A 13 -10.046 -16.472 19.139 1.00 14.69 C
ATOM 12 O2' A A 13 -11.099 -15.910 19.884 1.00 14.61 O
ATOM 13 C1' A A 13 -10.401 -17.875 18.659 1.00 13.90 C
ATOM 14 N9 A A 13 -10.161 -18.988 19.574 1.00 10.30 N
ATOM 15 C8 A A 13 -8.965 -19.574 19.886 1.00 9.30 C
ATOM 16 N7 A A 13 -9.084 -20.647 20.632 1.00 9.45 N
ATOM 17 C5 A A 13 -10.448 -20.750 20.852 1.00 5.68 C
ATOM 18 C6 A A 13 -11.221 -21.691 21.547 1.00 8.08 C
ATOM 19 N6 A A 13 -10.712 -22.763 22.168 1.00 4.89 N
ATOM 20 N1 A A 13 -12.559 -21.497 21.576 1.00 8.60 N
ATOM 21 C2 A A 13 -13.070 -20.430 20.939 1.00 7.59 C
ATOM 22 N3 A A 13 -12.444 -19.487 20.246 1.00 5.32 N
ATOM 23 C4 A A 13 -11.120 -19.712 20.236 1.00 6.82 C
ATOM 24 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 25 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 26 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 27 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
TER
ATOM 1 O3' G B 29 -20.157 -27.266 23.646 1.00 10.89 O
ATOM 2 P A B 30 -20.994 -28.068 24.744 1.00 12.62 P
ATOM 3 OP1 A B 30 -22.146 -28.745 24.094 1.00 15.82 O
ATOM 4 OP2 A B 30 -21.228 -27.154 25.891 1.00 14.93 O
ATOM 5 O5' A B 30 -19.963 -29.165 25.230 1.00 13.84 O
ATOM 6 C5' A B 30 -19.002 -28.834 26.207 1.00 17.50 C
ATOM 7 C4' A B 30 -17.677 -29.443 25.856 1.00 18.62 C
ATOM 8 O4' A B 30 -17.326 -29.122 24.488 1.00 17.55 O
ATOM 9 C3' A B 30 -16.520 -28.925 26.689 1.00 19.78 C
ATOM 10 O3' A B 30 -16.470 -29.623 27.929 1.00 24.77 O
ATOM 11 C2' A B 30 -15.329 -29.163 25.775 1.00 17.80 C
ATOM 12 O2' A B 30 -14.909 -30.509 25.783 1.00 18.32 O
ATOM 13 C1' A B 30 -15.941 -28.846 24.409 1.00 16.03 C
ATOM 14 N9 A B 30 -15.796 -27.448 24.018 1.00 14.87 N
ATOM 15 C8 A B 30 -16.769 -26.480 24.003 1.00 13.75 C
ATOM 16 N7 A B 30 -16.348 -25.315 23.570 1.00 13.54 N
ATOM 17 C5 A B 30 -15.004 -25.528 23.290 1.00 14.70 C
ATOM 18 C6 A B 30 -13.986 -24.681 22.790 1.00 15.76 C
ATOM 19 N6 A B 30 -14.168 -23.400 22.467 1.00 16.33 N
ATOM 20 N1 A B 30 -12.757 -25.208 22.629 1.00 15.58 N
ATOM 21 C2 A B 30 -12.572 -26.500 22.945 1.00 18.78 C
ATOM 22 N3 A B 30 -13.445 -27.395 23.419 1.00 15.25 N
ATOM 23 C4 A B 30 -14.653 -26.837 23.570 1.00 14.49 C
ATOM 24 P G B 31 -15.557 -29.058 29.120 1.00 29.46 P
ATOM 25 OP1 G B 31 -15.736 -29.909 30.330 1.00 26.98 O
ATOM 26 OP2 G B 31 -15.742 -27.589 29.216 1.00 29.71 O
ATOM 27 O5' G B 31 -14.092 -29.278 28.569 1.00 24.62 O
TER
ATOM 2 P A A 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 3 OP1 A A 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 4 OP2 A A 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 5 O5' A A 13 -7.172 -16.812 18.197 1.00 21.22 O
ATOM 6 C5' A A 13 -7.713 -16.723 16.889 1.00 19.57 C
ATOM 7 C4' A A 13 -9.214 -16.811 16.945 1.00 18.43 C
ATOM 8 O4' A A 13 -9.610 -18.092 17.509 1.00 16.61 O
ATOM 9 C3' A A 13 -9.900 -15.761 17.806 1.00 16.21 C
ATOM 10 O3' A A 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 11 C2' A A 13 -10.046 -16.472 19.139 1.00 14.69 C
ATOM 12 O2' A A 13 -11.099 -15.910 19.884 1.00 14.61 O
ATOM 13 C1' A A 13 -10.401 -17.875 18.659 1.00 13.90 C
ATOM 14 N9 A A 13 -10.161 -18.988 19.574 1.00 10.30 N
ATOM 15 C8 A A 13 -8.965 -19.574 19.886 1.00 9.30 C
ATOM 16 N7 A A 13 -9.084 -20.647 20.632 1.00 9.45 N
ATOM 17 C5 A A 13 -10.448 -20.750 20.852 1.00 5.68 C
ATOM 18 C6 A A 13 -11.221 -21.691 21.547 1.00 8.08 C
ATOM 19 N6 A A 13 -10.712 -22.763 22.168 1.00 4.89 N
ATOM 20 N1 A A 13 -12.559 -21.497 21.576 1.00 8.60 N
ATOM 21 C2 A A 13 -13.070 -20.430 20.939 1.00 7.59 C
ATOM 22 N3 A A 13 -12.444 -19.487 20.246 1.00 5.32 N
ATOM 23 C4 A A 13 -11.120 -19.712 20.236 1.00 6.82 C
ATOM 24 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 25 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 26 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 27 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
TER
ATOM 1 O3' G B 29 -20.157 -27.266 23.646 1.00 10.89 O
ATOM 2 P A B 30 -20.994 -28.068 24.744 1.00 12.62 P
ATOM 3 OP1 A B 30 -22.146 -28.745 24.094 1.00 15.82 O
ATOM 4 OP2 A B 30 -21.228 -27.154 25.891 1.00 14.93 O
ATOM 5 O5' A B 30 -19.963 -29.165 25.230 1.00 13.84 O
ATOM 6 C5' A B 30 -19.002 -28.834 26.207 1.00 17.50 C
ATOM 7 C4' A B 30 -17.677 -29.443 25.856 1.00 18.62 C
ATOM 8 O4' A B 30 -17.326 -29.122 24.488 1.00 17.55 O
ATOM 9 C3' A B 30 -16.520 -28.925 26.689 1.00 19.78 C
ATOM 10 O3' A B 30 -16.470 -29.623 27.929 1.00 24.77 O
ATOM 11 C2' A B 30 -15.329 -29.163 25.775 1.00 17.80 C
ATOM 12 O2' A B 30 -14.909 -30.509 25.783 1.00 18.32 O
ATOM 13 C1' A B 30 -15.941 -28.846 24.409 1.00 16.03 C
ATOM 14 N9 A B 30 -15.796 -27.448 24.018 1.00 14.87 N
ATOM 15 C8 A B 30 -16.769 -26.480 24.003 1.00 13.75 C
ATOM 16 N7 A B 30 -16.348 -25.315 23.570 1.00 13.54 N
ATOM 17 C5 A B 30 -15.004 -25.528 23.290 1.00 14.70 C
ATOM 18 C6 A B 30 -13.986 -24.681 22.790 1.00 15.76 C
ATOM 19 N6 A B 30 -14.168 -23.400 22.467 1.00 16.33 N
ATOM 20 N1 A B 30 -12.757 -25.208 22.629 1.00 15.58 N
ATOM 21 C2 A B 30 -12.572 -26.500 22.945 1.00 18.78 C
ATOM 22 N3 A B 30 -13.445 -27.395 23.419 1.00 15.25 N
ATOM 23 C4 A B 30 -14.653 -26.837 23.570 1.00 14.49 C
ATOM 24 P G B 31 -15.557 -29.058 29.120 1.00 29.46 P
ATOM 25 OP1 G B 31 -15.736 -29.909 30.330 1.00 26.98 O
ATOM 26 OP2 G B 31 -15.742 -27.589 29.216 1.00 29.71 O
ATOM 27 O5' G B 31 -14.092 -29.278 28.569 1.00 24.62 O
TER
Atoms:
OP1: (-6.003,-18.995,18.453)
OP2: (-4.836,-16.926,17.422)
C3': (-9.900,-15.761,17.806)
C1': (-10.401,-17.875,18.659)
C5': (-7.713,-16.723,16.889)
O4': (-9.610,-18.092,17.509)
C8: (-8.965,-19.574,19.886)
O2': (-11.099,-15.910,19.884)
C6: (-11.221,-21.691,21.547)
C5: (-10.448,-20.750,20.852)
C4: (-11.120,-19.712,20.236)
P: (-5.775,-17.525,18.422)
C4': (-9.214,-16.811,16.945)
C2': (-10.046,-16.472,19.139)
C2: (-13.070,-20.430,20.939)
N1: (-12.559,-21.497,21.576)
N3: (-12.444,-19.487,20.246)
N6: (-10.712,-22.763,22.168)
N7: (-9.084,-20.647,20.632)
N9: (-10.161,-18.988,19.574)
O5': (-7.172,-16.812,18.197)
O3': (-11.191,-15.608,17.268)
OP2: (-4.836,-16.926,17.422)
C3': (-9.900,-15.761,17.806)
C1': (-10.401,-17.875,18.659)
C5': (-7.713,-16.723,16.889)
O4': (-9.610,-18.092,17.509)
C8: (-8.965,-19.574,19.886)
O2': (-11.099,-15.910,19.884)
C6: (-11.221,-21.691,21.547)
C5: (-10.448,-20.750,20.852)
C4: (-11.120,-19.712,20.236)
P: (-5.775,-17.525,18.422)
C4': (-9.214,-16.811,16.945)
C2': (-10.046,-16.472,19.139)
C2: (-13.070,-20.430,20.939)
N1: (-12.559,-21.497,21.576)
N3: (-12.444,-19.487,20.246)
N6: (-10.712,-22.763,22.168)
N7: (-9.084,-20.647,20.632)
N9: (-10.161,-18.988,19.574)
O5': (-7.172,-16.812,18.197)
O3': (-11.191,-15.608,17.268)
OP1: (-22.146,-28.745,24.094)
OP2: (-21.228,-27.154,25.891)
C3': (-16.520,-28.925,26.689)
C1': (-15.941,-28.846,24.409)
C5': (-19.002,-28.834,26.207)
O4': (-17.326,-29.122,24.488)
C8: (-16.769,-26.480,24.003)
O2': (-14.909,-30.509,25.783)
C6: (-13.986,-24.681,22.790)
C5: (-15.004,-25.528,23.290)
C4: (-14.653,-26.837,23.570)
P: (-20.994,-28.068,24.744)
C4': (-17.677,-29.443,25.856)
C2': (-15.329,-29.163,25.775)
C2: (-12.572,-26.500,22.945)
N1: (-12.757,-25.208,22.629)
N3: (-13.445,-27.395,23.419)
N6: (-14.168,-23.400,22.467)
N7: (-16.348,-25.315,23.570)
N9: (-15.796,-27.448,24.018)
O5': (-19.963,-29.165,25.230)
O3': (-16.470,-29.623,27.929)
OP2: (-21.228,-27.154,25.891)
C3': (-16.520,-28.925,26.689)
C1': (-15.941,-28.846,24.409)
C5': (-19.002,-28.834,26.207)
O4': (-17.326,-29.122,24.488)
C8: (-16.769,-26.480,24.003)
O2': (-14.909,-30.509,25.783)
C6: (-13.986,-24.681,22.790)
C5: (-15.004,-25.528,23.290)
C4: (-14.653,-26.837,23.570)
P: (-20.994,-28.068,24.744)
C4': (-17.677,-29.443,25.856)
C2': (-15.329,-29.163,25.775)
C2: (-12.572,-26.500,22.945)
N1: (-12.757,-25.208,22.629)
N3: (-13.445,-27.395,23.419)
N6: (-14.168,-23.400,22.467)
N7: (-16.348,-25.315,23.570)
N9: (-15.796,-27.448,24.018)
O5': (-19.963,-29.165,25.230)
O3': (-16.470,-29.623,27.929)
Image (generated by PyMOL):