Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11985:11964
Extra
PDB:
ATOM 1 O3' G A1984 -4.443 -5.801 122.897 1.00 53.78 O
ATOM 2 P A A1985 -6.015 -5.790 123.228 1.00 46.48 P
ATOM 3 OP1 A A1985 -6.330 -4.518 123.926 1.00 46.84 O
ATOM 4 OP2 A A1985 -6.308 -7.049 123.911 1.00 46.69 O
ATOM 5 O5' A A1985 -6.672 -5.804 121.785 1.00 46.13 O
ATOM 6 C5' A A1985 -6.642 -4.664 120.944 1.00 45.92 C
ATOM 7 C4' A A1985 -6.973 -5.040 119.525 1.00 45.52 C
ATOM 8 O4' A A1985 -5.971 -5.977 119.027 1.00 45.13 O
ATOM 9 C3' A A1985 -8.313 -5.729 119.348 1.00 45.68 C
ATOM 10 O3' A A1985 -8.841 -5.405 118.069 1.00 45.42 O
ATOM 11 C2' A A1985 -7.938 -7.199 119.376 1.00 45.54 C
ATOM 12 O2' A A1985 -8.854 -8.048 118.709 1.00 45.48 O
ATOM 13 C1' A A1985 -6.578 -7.190 118.682 1.00 45.07 C
ATOM 14 N9 A A1985 -5.722 -8.286 119.111 1.00 45.00 N
ATOM 15 C8 A A1985 -4.886 -8.409 120.183 1.00 45.18 C
ATOM 16 N7 A A1985 -4.319 -9.593 120.311 1.00 45.08 N
ATOM 17 C5 A A1985 -4.848 -10.304 119.258 1.00 44.83 C
ATOM 18 C6 A A1985 -4.642 -11.621 118.824 1.00 44.63 C
ATOM 19 N6 A A1985 -3.829 -12.525 119.416 1.00 44.66 N
ATOM 20 N1 A A1985 -5.348 -11.978 117.724 1.00 44.42 N
ATOM 21 C2 A A1985 -6.144 -11.090 117.120 1.00 44.41 C
ATOM 22 N3 A A1985 -6.408 -9.839 117.417 1.00 44.57 N
ATOM 23 C4 A A1985 -5.714 -9.510 118.518 1.00 44.78 C
ATOM 24 P C A1986 -9.922 -4.231 117.914 1.00 48.97 P
ATOM 25 OP1 C A1986 -10.833 -4.335 119.086 1.00 49.50 O
ATOM 26 OP2 C A1986 -10.496 -4.352 116.526 1.00 48.68 O
ATOM 27 O5' C A1986 -9.057 -2.902 118.025 1.00 48.92 O
TER
ATOM 1 O3' C B1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 2 P G B1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 3 OP1 G B1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 4 OP2 G B1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 5 O5' G B1964 -2.804 -15.586 119.758 1.00 48.36 O
ATOM 6 C5' G B1964 -1.792 -15.701 120.736 1.00 48.50 C
ATOM 7 C4' G B1964 -2.280 -15.356 122.119 1.00 49.02 C
ATOM 8 O4' G B1964 -3.070 -14.145 122.073 1.00 49.13 O
ATOM 9 C3' G B1964 -3.136 -16.410 122.811 1.00 49.39 C
ATOM 10 O3' G B1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 11 C2' G B1964 -4.522 -15.797 122.824 1.00 49.62 C
ATOM 12 O2' G B1964 -5.299 -16.200 123.929 1.00 50.12 O
ATOM 13 C1' G B1964 -4.205 -14.309 122.878 1.00 49.58 C
ATOM 14 N9 G B1964 -5.276 -13.451 122.365 1.00 49.60 N
ATOM 15 C8 G B1964 -6.296 -13.858 121.572 1.00 49.52 C
ATOM 16 N7 G B1964 -7.110 -12.894 121.291 1.00 49.59 N
ATOM 17 C5 G B1964 -6.618 -11.791 121.940 1.00 49.72 C
ATOM 18 C6 G B1964 -7.098 -10.456 121.999 1.00 49.86 C
ATOM 19 O6 G B1964 -8.101 -9.946 121.470 1.00 49.89 O
ATOM 20 N1 G B1964 -6.269 -9.647 122.774 1.00 49.98 N
ATOM 21 C2 G B1964 -5.138 -10.051 123.415 1.00 49.98 C
ATOM 22 N2 G B1964 -4.488 -9.111 124.121 1.00 50.13 N
ATOM 23 N3 G B1964 -4.719 -11.312 123.358 1.00 49.85 N
ATOM 24 C4 G B1964 -5.484 -12.121 122.610 1.00 49.73 C
ATOM 25 P A B1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 26 OP1 A B1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 27 OP2 A B1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 28 O5' A B1965 -0.259 -16.842 124.063 1.00 48.94 O
TER
ATOM 2 P A A1985 -6.015 -5.790 123.228 1.00 46.48 P
ATOM 3 OP1 A A1985 -6.330 -4.518 123.926 1.00 46.84 O
ATOM 4 OP2 A A1985 -6.308 -7.049 123.911 1.00 46.69 O
ATOM 5 O5' A A1985 -6.672 -5.804 121.785 1.00 46.13 O
ATOM 6 C5' A A1985 -6.642 -4.664 120.944 1.00 45.92 C
ATOM 7 C4' A A1985 -6.973 -5.040 119.525 1.00 45.52 C
ATOM 8 O4' A A1985 -5.971 -5.977 119.027 1.00 45.13 O
ATOM 9 C3' A A1985 -8.313 -5.729 119.348 1.00 45.68 C
ATOM 10 O3' A A1985 -8.841 -5.405 118.069 1.00 45.42 O
ATOM 11 C2' A A1985 -7.938 -7.199 119.376 1.00 45.54 C
ATOM 12 O2' A A1985 -8.854 -8.048 118.709 1.00 45.48 O
ATOM 13 C1' A A1985 -6.578 -7.190 118.682 1.00 45.07 C
ATOM 14 N9 A A1985 -5.722 -8.286 119.111 1.00 45.00 N
ATOM 15 C8 A A1985 -4.886 -8.409 120.183 1.00 45.18 C
ATOM 16 N7 A A1985 -4.319 -9.593 120.311 1.00 45.08 N
ATOM 17 C5 A A1985 -4.848 -10.304 119.258 1.00 44.83 C
ATOM 18 C6 A A1985 -4.642 -11.621 118.824 1.00 44.63 C
ATOM 19 N6 A A1985 -3.829 -12.525 119.416 1.00 44.66 N
ATOM 20 N1 A A1985 -5.348 -11.978 117.724 1.00 44.42 N
ATOM 21 C2 A A1985 -6.144 -11.090 117.120 1.00 44.41 C
ATOM 22 N3 A A1985 -6.408 -9.839 117.417 1.00 44.57 N
ATOM 23 C4 A A1985 -5.714 -9.510 118.518 1.00 44.78 C
ATOM 24 P C A1986 -9.922 -4.231 117.914 1.00 48.97 P
ATOM 25 OP1 C A1986 -10.833 -4.335 119.086 1.00 49.50 O
ATOM 26 OP2 C A1986 -10.496 -4.352 116.526 1.00 48.68 O
ATOM 27 O5' C A1986 -9.057 -2.902 118.025 1.00 48.92 O
TER
ATOM 1 O3' C B1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 2 P G B1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 3 OP1 G B1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 4 OP2 G B1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 5 O5' G B1964 -2.804 -15.586 119.758 1.00 48.36 O
ATOM 6 C5' G B1964 -1.792 -15.701 120.736 1.00 48.50 C
ATOM 7 C4' G B1964 -2.280 -15.356 122.119 1.00 49.02 C
ATOM 8 O4' G B1964 -3.070 -14.145 122.073 1.00 49.13 O
ATOM 9 C3' G B1964 -3.136 -16.410 122.811 1.00 49.39 C
ATOM 10 O3' G B1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 11 C2' G B1964 -4.522 -15.797 122.824 1.00 49.62 C
ATOM 12 O2' G B1964 -5.299 -16.200 123.929 1.00 50.12 O
ATOM 13 C1' G B1964 -4.205 -14.309 122.878 1.00 49.58 C
ATOM 14 N9 G B1964 -5.276 -13.451 122.365 1.00 49.60 N
ATOM 15 C8 G B1964 -6.296 -13.858 121.572 1.00 49.52 C
ATOM 16 N7 G B1964 -7.110 -12.894 121.291 1.00 49.59 N
ATOM 17 C5 G B1964 -6.618 -11.791 121.940 1.00 49.72 C
ATOM 18 C6 G B1964 -7.098 -10.456 121.999 1.00 49.86 C
ATOM 19 O6 G B1964 -8.101 -9.946 121.470 1.00 49.89 O
ATOM 20 N1 G B1964 -6.269 -9.647 122.774 1.00 49.98 N
ATOM 21 C2 G B1964 -5.138 -10.051 123.415 1.00 49.98 C
ATOM 22 N2 G B1964 -4.488 -9.111 124.121 1.00 50.13 N
ATOM 23 N3 G B1964 -4.719 -11.312 123.358 1.00 49.85 N
ATOM 24 C4 G B1964 -5.484 -12.121 122.610 1.00 49.73 C
ATOM 25 P A B1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 26 OP1 A B1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 27 OP2 A B1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 28 O5' A B1965 -0.259 -16.842 124.063 1.00 48.94 O
TER
Atoms:
OP1: (-6.330,-4.518,123.926)
OP2: (-6.308,-7.049,123.911)
C3': (-8.313,-5.729,119.348)
C1': (-6.578,-7.190,118.682)
C5': (-6.642,-4.664,120.944)
O4': (-5.971,-5.977,119.027)
C8: (-4.886,-8.409,120.183)
O2': (-8.854,-8.048,118.709)
C6: (-4.642,-11.621,118.824)
C5: (-4.848,-10.304,119.258)
C4: (-5.714,-9.510,118.518)
P: (-6.015,-5.790,123.228)
C4': (-6.973,-5.040,119.525)
C2': (-7.938,-7.199,119.376)
C2: (-6.144,-11.090,117.120)
N1: (-5.348,-11.978,117.724)
N3: (-6.408,-9.839,117.417)
N6: (-3.829,-12.525,119.416)
N7: (-4.319,-9.593,120.311)
N9: (-5.722,-8.286,119.111)
O5': (-6.672,-5.804,121.785)
O3': (-8.841,-5.405,118.069)
OP2: (-6.308,-7.049,123.911)
C3': (-8.313,-5.729,119.348)
C1': (-6.578,-7.190,118.682)
C5': (-6.642,-4.664,120.944)
O4': (-5.971,-5.977,119.027)
C8: (-4.886,-8.409,120.183)
O2': (-8.854,-8.048,118.709)
C6: (-4.642,-11.621,118.824)
C5: (-4.848,-10.304,119.258)
C4: (-5.714,-9.510,118.518)
P: (-6.015,-5.790,123.228)
C4': (-6.973,-5.040,119.525)
C2': (-7.938,-7.199,119.376)
C2: (-6.144,-11.090,117.120)
N1: (-5.348,-11.978,117.724)
N3: (-6.408,-9.839,117.417)
N6: (-3.829,-12.525,119.416)
N7: (-4.319,-9.593,120.311)
N9: (-5.722,-8.286,119.111)
O5': (-6.672,-5.804,121.785)
O3': (-8.841,-5.405,118.069)
OP1: (-2.808,-18.074,119.609)
OP2: (-4.540,-16.718,118.279)
C3': (-3.136,-16.410,122.811)
C1': (-4.205,-14.309,122.878)
C5': (-1.792,-15.701,120.736)
O6: (-8.101,-9.946,121.470)
O4': (-3.070,-14.145,122.073)
C8: (-6.296,-13.858,121.572)
C2: (-5.138,-10.051,123.415)
C6: (-7.098,-10.456,121.999)
C5: (-6.618,-11.791,121.940)
C4: (-5.484,-12.121,122.610)
P: (-3.159,-16.844,118.853)
C4': (-2.280,-15.356,122.119)
C2': (-4.522,-15.797,122.824)
O2': (-5.299,-16.200,123.929)
N1: (-6.269,-9.647,122.774)
N2: (-4.488,-9.111,124.121)
N3: (-4.719,-11.312,123.358)
N7: (-7.110,-12.894,121.291)
N9: (-5.276,-13.451,122.365)
O5': (-2.804,-15.586,119.758)
O3': (-2.712,-16.564,124.153)
OP2: (-4.540,-16.718,118.279)
C3': (-3.136,-16.410,122.811)
C1': (-4.205,-14.309,122.878)
C5': (-1.792,-15.701,120.736)
O6: (-8.101,-9.946,121.470)
O4': (-3.070,-14.145,122.073)
C8: (-6.296,-13.858,121.572)
C2: (-5.138,-10.051,123.415)
C6: (-7.098,-10.456,121.999)
C5: (-6.618,-11.791,121.940)
C4: (-5.484,-12.121,122.610)
P: (-3.159,-16.844,118.853)
C4': (-2.280,-15.356,122.119)
C2': (-4.522,-15.797,122.824)
O2': (-5.299,-16.200,123.929)
N1: (-6.269,-9.647,122.774)
N2: (-4.488,-9.111,124.121)
N3: (-4.719,-11.312,123.358)
N7: (-7.110,-12.894,121.291)
N9: (-5.276,-13.451,122.365)
O5': (-2.804,-15.586,119.758)
O3': (-2.712,-16.564,124.153)
Image (generated by PyMOL):