Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12499:12414
Extra
PDB:
ATOM 1 O3' A A2498 24.270 -89.178 48.298 1.00 59.94 O
ATOM 2 P A A2499 24.898 -87.920 49.086 1.00 62.98 P
ATOM 3 OP1 A A2499 25.527 -88.450 50.329 1.00 63.03 O
ATOM 4 OP2 A A2499 23.809 -86.907 49.217 1.00 62.54 O
ATOM 5 O5' A A2499 26.030 -87.417 48.065 1.00 62.81 O
ATOM 6 C5' A A2499 27.101 -88.280 47.665 1.00 63.24 C
ATOM 7 C4' A A2499 27.714 -87.834 46.356 1.00 63.18 C
ATOM 8 O4' A A2499 26.665 -87.670 45.378 1.00 63.32 O
ATOM 9 C3' A A2499 28.429 -86.490 46.383 1.00 62.48 C
ATOM 10 O3' A A2499 29.786 -86.603 46.775 1.00 62.41 O
ATOM 11 C2' A A2499 28.239 -85.941 44.967 1.00 62.45 C
ATOM 12 O2' A A2499 29.217 -86.476 44.090 1.00 62.81 O
ATOM 13 C1' A A2499 26.887 -86.530 44.584 1.00 62.88 C
ATOM 14 N9 A A2499 25.748 -85.599 44.780 1.00 62.46 N
ATOM 15 C8 A A2499 24.806 -85.551 45.796 1.00 62.33 C
ATOM 16 N7 A A2499 23.884 -84.636 45.606 1.00 61.99 N
ATOM 17 C5 A A2499 24.196 -84.064 44.369 1.00 61.91 C
ATOM 18 C6 A A2499 23.623 -83.052 43.559 1.00 61.61 C
ATOM 19 N6 A A2499 22.530 -82.331 43.833 1.00 61.32 N
ATOM 20 N1 A A2499 24.191 -82.765 42.387 1.00 61.65 N
ATOM 21 C2 A A2499 25.274 -83.439 42.054 1.00 61.95 C
ATOM 22 N3 A A2499 25.928 -84.397 42.702 1.00 62.24 N
ATOM 23 C4 A A2499 25.325 -84.667 43.862 1.00 62.20 C
ATOM 24 P A A2500 30.487 -85.430 47.640 1.00 54.79 P
ATOM 25 OP1 A A2500 31.641 -86.053 48.347 1.00 54.95 O
ATOM 26 OP2 A A2500 29.418 -84.771 48.452 1.00 54.40 O
ATOM 27 O5' A A2500 31.022 -84.450 46.509 1.00 54.47 O
TER
ATOM 1 O3' G B2413 19.942 -80.486 44.632 1.00 64.09 O
ATOM 2 P G B2414 19.653 -79.852 43.176 1.00 60.02 P
ATOM 3 OP1 G B2414 20.628 -80.444 42.255 1.00 60.36 O
ATOM 4 OP2 G B2414 19.636 -78.401 43.318 1.00 59.35 O
ATOM 5 O5' G B2414 18.177 -80.352 42.842 1.00 60.45 O
ATOM 6 C5' G B2414 17.762 -81.680 43.129 1.00 61.04 C
ATOM 7 C4' G B2414 16.259 -81.848 42.978 1.00 61.31 C
ATOM 8 O4' G B2414 15.565 -81.320 44.139 1.00 60.93 O
ATOM 9 C3' G B2414 15.600 -81.139 41.803 1.00 61.28 C
ATOM 10 O3' G B2414 15.757 -81.842 40.588 1.00 61.82 O
ATOM 11 C2' G B2414 14.157 -81.068 42.249 1.00 61.33 C
ATOM 12 O2' G B2414 13.533 -82.335 42.056 1.00 62.03 O
ATOM 13 C1' G B2414 14.307 -80.820 43.750 1.00 60.92 C
ATOM 14 N9 G B2414 14.243 -79.378 44.100 1.00 60.22 N
ATOM 15 C8 G B2414 15.337 -78.555 44.289 1.00 59.70 C
ATOM 16 N7 G B2414 15.018 -77.329 44.578 1.00 59.16 N
ATOM 17 C5 G B2414 13.662 -77.331 44.617 1.00 59.31 C
ATOM 18 C6 G B2414 12.845 -76.251 44.902 1.00 58.91 C
ATOM 19 O6 G B2414 13.188 -75.104 45.185 1.00 58.34 O
ATOM 20 N1 G B2414 11.515 -76.627 44.820 1.00 59.25 N
ATOM 21 C2 G B2414 11.070 -77.891 44.506 1.00 59.91 C
ATOM 22 N2 G B2414 9.752 -78.004 44.508 1.00 60.14 N
ATOM 23 N3 G B2414 11.834 -78.937 44.241 1.00 60.31 N
ATOM 24 C4 G B2414 13.133 -78.571 44.326 1.00 59.97 C
ATOM 25 P G B2415 15.486 -81.109 39.192 1.00 57.16 P
ATOM 26 OP1 G B2415 15.689 -82.128 38.145 1.00 57.83 O
ATOM 27 OP2 G B2415 16.310 -79.882 39.162 1.00 56.52 O
ATOM 28 O5' G B2415 13.930 -80.696 39.281 1.00 57.14 O
TER
ATOM 2 P A A2499 24.898 -87.920 49.086 1.00 62.98 P
ATOM 3 OP1 A A2499 25.527 -88.450 50.329 1.00 63.03 O
ATOM 4 OP2 A A2499 23.809 -86.907 49.217 1.00 62.54 O
ATOM 5 O5' A A2499 26.030 -87.417 48.065 1.00 62.81 O
ATOM 6 C5' A A2499 27.101 -88.280 47.665 1.00 63.24 C
ATOM 7 C4' A A2499 27.714 -87.834 46.356 1.00 63.18 C
ATOM 8 O4' A A2499 26.665 -87.670 45.378 1.00 63.32 O
ATOM 9 C3' A A2499 28.429 -86.490 46.383 1.00 62.48 C
ATOM 10 O3' A A2499 29.786 -86.603 46.775 1.00 62.41 O
ATOM 11 C2' A A2499 28.239 -85.941 44.967 1.00 62.45 C
ATOM 12 O2' A A2499 29.217 -86.476 44.090 1.00 62.81 O
ATOM 13 C1' A A2499 26.887 -86.530 44.584 1.00 62.88 C
ATOM 14 N9 A A2499 25.748 -85.599 44.780 1.00 62.46 N
ATOM 15 C8 A A2499 24.806 -85.551 45.796 1.00 62.33 C
ATOM 16 N7 A A2499 23.884 -84.636 45.606 1.00 61.99 N
ATOM 17 C5 A A2499 24.196 -84.064 44.369 1.00 61.91 C
ATOM 18 C6 A A2499 23.623 -83.052 43.559 1.00 61.61 C
ATOM 19 N6 A A2499 22.530 -82.331 43.833 1.00 61.32 N
ATOM 20 N1 A A2499 24.191 -82.765 42.387 1.00 61.65 N
ATOM 21 C2 A A2499 25.274 -83.439 42.054 1.00 61.95 C
ATOM 22 N3 A A2499 25.928 -84.397 42.702 1.00 62.24 N
ATOM 23 C4 A A2499 25.325 -84.667 43.862 1.00 62.20 C
ATOM 24 P A A2500 30.487 -85.430 47.640 1.00 54.79 P
ATOM 25 OP1 A A2500 31.641 -86.053 48.347 1.00 54.95 O
ATOM 26 OP2 A A2500 29.418 -84.771 48.452 1.00 54.40 O
ATOM 27 O5' A A2500 31.022 -84.450 46.509 1.00 54.47 O
TER
ATOM 1 O3' G B2413 19.942 -80.486 44.632 1.00 64.09 O
ATOM 2 P G B2414 19.653 -79.852 43.176 1.00 60.02 P
ATOM 3 OP1 G B2414 20.628 -80.444 42.255 1.00 60.36 O
ATOM 4 OP2 G B2414 19.636 -78.401 43.318 1.00 59.35 O
ATOM 5 O5' G B2414 18.177 -80.352 42.842 1.00 60.45 O
ATOM 6 C5' G B2414 17.762 -81.680 43.129 1.00 61.04 C
ATOM 7 C4' G B2414 16.259 -81.848 42.978 1.00 61.31 C
ATOM 8 O4' G B2414 15.565 -81.320 44.139 1.00 60.93 O
ATOM 9 C3' G B2414 15.600 -81.139 41.803 1.00 61.28 C
ATOM 10 O3' G B2414 15.757 -81.842 40.588 1.00 61.82 O
ATOM 11 C2' G B2414 14.157 -81.068 42.249 1.00 61.33 C
ATOM 12 O2' G B2414 13.533 -82.335 42.056 1.00 62.03 O
ATOM 13 C1' G B2414 14.307 -80.820 43.750 1.00 60.92 C
ATOM 14 N9 G B2414 14.243 -79.378 44.100 1.00 60.22 N
ATOM 15 C8 G B2414 15.337 -78.555 44.289 1.00 59.70 C
ATOM 16 N7 G B2414 15.018 -77.329 44.578 1.00 59.16 N
ATOM 17 C5 G B2414 13.662 -77.331 44.617 1.00 59.31 C
ATOM 18 C6 G B2414 12.845 -76.251 44.902 1.00 58.91 C
ATOM 19 O6 G B2414 13.188 -75.104 45.185 1.00 58.34 O
ATOM 20 N1 G B2414 11.515 -76.627 44.820 1.00 59.25 N
ATOM 21 C2 G B2414 11.070 -77.891 44.506 1.00 59.91 C
ATOM 22 N2 G B2414 9.752 -78.004 44.508 1.00 60.14 N
ATOM 23 N3 G B2414 11.834 -78.937 44.241 1.00 60.31 N
ATOM 24 C4 G B2414 13.133 -78.571 44.326 1.00 59.97 C
ATOM 25 P G B2415 15.486 -81.109 39.192 1.00 57.16 P
ATOM 26 OP1 G B2415 15.689 -82.128 38.145 1.00 57.83 O
ATOM 27 OP2 G B2415 16.310 -79.882 39.162 1.00 56.52 O
ATOM 28 O5' G B2415 13.930 -80.696 39.281 1.00 57.14 O
TER
Atoms:
OP1: (25.527,-88.450,50.329)
OP2: (23.809,-86.907,49.217)
C3': (28.429,-86.490,46.383)
C1': (26.887,-86.530,44.584)
C5': (27.101,-88.280,47.665)
O4': (26.665,-87.670,45.378)
C8: (24.806,-85.551,45.796)
O2': (29.217,-86.476,44.090)
C6: (23.623,-83.052,43.559)
C5: (24.196,-84.064,44.369)
C4: (25.325,-84.667,43.862)
P: (24.898,-87.920,49.086)
C4': (27.714,-87.834,46.356)
C2': (28.239,-85.941,44.967)
C2: (25.274,-83.439,42.054)
N1: (24.191,-82.765,42.387)
N3: (25.928,-84.397,42.702)
N6: (22.530,-82.331,43.833)
N7: (23.884,-84.636,45.606)
N9: (25.748,-85.599,44.780)
O5': (26.030,-87.417,48.065)
O3': (29.786,-86.603,46.775)
OP2: (23.809,-86.907,49.217)
C3': (28.429,-86.490,46.383)
C1': (26.887,-86.530,44.584)
C5': (27.101,-88.280,47.665)
O4': (26.665,-87.670,45.378)
C8: (24.806,-85.551,45.796)
O2': (29.217,-86.476,44.090)
C6: (23.623,-83.052,43.559)
C5: (24.196,-84.064,44.369)
C4: (25.325,-84.667,43.862)
P: (24.898,-87.920,49.086)
C4': (27.714,-87.834,46.356)
C2': (28.239,-85.941,44.967)
C2: (25.274,-83.439,42.054)
N1: (24.191,-82.765,42.387)
N3: (25.928,-84.397,42.702)
N6: (22.530,-82.331,43.833)
N7: (23.884,-84.636,45.606)
N9: (25.748,-85.599,44.780)
O5': (26.030,-87.417,48.065)
O3': (29.786,-86.603,46.775)
OP1: (20.628,-80.444,42.255)
OP2: (19.636,-78.401,43.318)
C3': (15.600,-81.139,41.803)
C1': (14.307,-80.820,43.750)
C5': (17.762,-81.680,43.129)
O6: (13.188,-75.104,45.185)
O4': (15.565,-81.320,44.139)
C8: (15.337,-78.555,44.289)
C2: (11.070,-77.891,44.506)
C6: (12.845,-76.251,44.902)
C5: (13.662,-77.331,44.617)
C4: (13.133,-78.571,44.326)
P: (19.653,-79.852,43.176)
C4': (16.259,-81.848,42.978)
C2': (14.157,-81.068,42.249)
O2': (13.533,-82.335,42.056)
N1: (11.515,-76.627,44.820)
N2: (9.752,-78.004,44.508)
N3: (11.834,-78.937,44.241)
N7: (15.018,-77.329,44.578)
N9: (14.243,-79.378,44.100)
O5': (18.177,-80.352,42.842)
O3': (15.757,-81.842,40.588)
OP2: (19.636,-78.401,43.318)
C3': (15.600,-81.139,41.803)
C1': (14.307,-80.820,43.750)
C5': (17.762,-81.680,43.129)
O6: (13.188,-75.104,45.185)
O4': (15.565,-81.320,44.139)
C8: (15.337,-78.555,44.289)
C2: (11.070,-77.891,44.506)
C6: (12.845,-76.251,44.902)
C5: (13.662,-77.331,44.617)
C4: (13.133,-78.571,44.326)
P: (19.653,-79.852,43.176)
C4': (16.259,-81.848,42.978)
C2': (14.157,-81.068,42.249)
O2': (13.533,-82.335,42.056)
N1: (11.515,-76.627,44.820)
N2: (9.752,-78.004,44.508)
N3: (11.834,-78.937,44.241)
N7: (15.018,-77.329,44.578)
N9: (14.243,-79.378,44.100)
O5': (18.177,-80.352,42.842)
O3': (15.757,-81.842,40.588)
Image (generated by PyMOL):