Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0473:0497
Extra
PDB:
ATOM 1 O3' A A 472 22.654 156.351 45.094 1.00 45.30 O
ATOM 2 P A A 473 24.120 156.848 45.545 1.00 46.10 P
ATOM 3 OP1 A A 473 24.732 157.568 44.395 1.00 44.19 O
ATOM 4 OP2 A A 473 24.825 155.685 46.135 1.00 44.81 O
ATOM 5 O5' A A 473 23.829 157.933 46.677 1.00 44.55 O
ATOM 6 C5' A A 473 24.741 159.017 46.904 1.00 45.47 C
ATOM 7 C4' A A 473 24.166 159.996 47.900 1.00 47.47 C
ATOM 8 O4' A A 473 23.692 159.280 49.076 1.00 46.74 O
ATOM 9 C3' A A 473 25.179 161.024 48.417 1.00 48.25 C
ATOM 10 O3' A A 473 24.528 162.243 48.788 1.00 50.42 O
ATOM 11 C2' A A 473 25.615 160.381 49.728 1.00 48.34 C
ATOM 12 O2' A A 473 26.167 161.284 50.663 1.00 50.00 O
ATOM 13 C1' A A 473 24.270 159.866 50.217 1.00 47.56 C
ATOM 14 N9 A A 473 24.278 158.908 51.316 1.00 48.11 N
ATOM 15 C8 A A 473 24.986 157.741 51.466 1.00 47.96 C
ATOM 16 N7 A A 473 24.742 157.121 52.595 1.00 47.93 N
ATOM 17 C5 A A 473 23.813 157.936 53.229 1.00 47.85 C
ATOM 18 C6 A A 473 23.141 157.830 54.460 1.00 47.16 C
ATOM 19 N6 A A 473 23.314 156.819 55.311 1.00 46.90 N
ATOM 20 N1 A A 473 22.272 158.812 54.789 1.00 46.72 N
ATOM 21 C2 A A 473 22.099 159.824 53.934 1.00 46.39 C
ATOM 22 N3 A A 473 22.667 160.034 52.751 1.00 46.37 N
ATOM 23 C4 A A 473 23.522 159.040 52.454 1.00 47.88 C
ATOM 24 P A A 474 23.917 163.225 47.672 1.00 50.09 P
ATOM 25 OP1 A A 474 23.905 162.539 46.354 1.00 48.57 O
ATOM 26 OP2 A A 474 24.608 164.528 47.809 1.00 51.08 O
ATOM 27 O5' A A 474 22.417 163.410 48.179 1.00 49.14 O
TER
ATOM 1 O3' A B 496 14.336 152.674 62.492 1.00 56.15 O
ATOM 2 P A B 497 14.499 154.101 63.209 1.00 57.03 P
ATOM 3 OP1 A B 497 13.782 154.026 64.503 1.00 57.72 O
ATOM 4 OP2 A B 497 14.166 155.179 62.248 1.00 56.48 O
ATOM 5 O5' A B 497 16.043 154.169 63.566 1.00 56.71 O
ATOM 6 C5' A B 497 17.015 154.319 62.549 1.00 58.13 C
ATOM 7 C4' A B 497 18.381 154.186 63.140 1.00 60.54 C
ATOM 8 O4' A B 497 19.371 154.400 62.106 1.00 61.31 O
ATOM 9 C3' A B 497 18.702 155.190 64.232 1.00 62.05 C
ATOM 10 O3' A B 497 19.606 154.631 65.169 1.00 65.26 O
ATOM 11 C2' A B 497 19.290 156.364 63.458 1.00 63.11 C
ATOM 12 O2' A B 497 20.243 157.096 64.207 1.00 63.60 O
ATOM 13 C1' A B 497 19.934 155.686 62.243 1.00 62.15 C
ATOM 14 N9 A B 497 19.696 156.420 60.994 1.00 60.90 N
ATOM 15 C8 A B 497 18.658 157.268 60.685 1.00 59.98 C
ATOM 16 N7 A B 497 18.767 157.827 59.506 1.00 59.91 N
ATOM 17 C5 A B 497 19.946 157.301 58.995 1.00 59.61 C
ATOM 18 C6 A B 497 20.635 157.510 57.783 1.00 58.78 C
ATOM 19 N6 A B 497 20.240 158.353 56.832 1.00 59.39 N
ATOM 20 N1 A B 497 21.769 156.819 57.583 1.00 58.80 N
ATOM 21 C2 A B 497 22.188 155.989 58.539 1.00 59.89 C
ATOM 22 N3 A B 497 21.643 155.717 59.720 1.00 60.37 N
ATOM 23 C4 A B 497 20.512 156.415 59.890 1.00 59.92 C
ATOM 24 P U B 498 19.346 154.849 66.737 1.00 66.59 P
ATOM 25 OP1 U B 498 17.903 154.607 66.987 1.00 66.85 O
ATOM 26 OP2 U B 498 19.949 156.141 67.125 1.00 67.09 O
ATOM 27 O5' U B 498 20.158 153.680 67.450 1.00 70.76 O
TER
ATOM 2 P A A 473 24.120 156.848 45.545 1.00 46.10 P
ATOM 3 OP1 A A 473 24.732 157.568 44.395 1.00 44.19 O
ATOM 4 OP2 A A 473 24.825 155.685 46.135 1.00 44.81 O
ATOM 5 O5' A A 473 23.829 157.933 46.677 1.00 44.55 O
ATOM 6 C5' A A 473 24.741 159.017 46.904 1.00 45.47 C
ATOM 7 C4' A A 473 24.166 159.996 47.900 1.00 47.47 C
ATOM 8 O4' A A 473 23.692 159.280 49.076 1.00 46.74 O
ATOM 9 C3' A A 473 25.179 161.024 48.417 1.00 48.25 C
ATOM 10 O3' A A 473 24.528 162.243 48.788 1.00 50.42 O
ATOM 11 C2' A A 473 25.615 160.381 49.728 1.00 48.34 C
ATOM 12 O2' A A 473 26.167 161.284 50.663 1.00 50.00 O
ATOM 13 C1' A A 473 24.270 159.866 50.217 1.00 47.56 C
ATOM 14 N9 A A 473 24.278 158.908 51.316 1.00 48.11 N
ATOM 15 C8 A A 473 24.986 157.741 51.466 1.00 47.96 C
ATOM 16 N7 A A 473 24.742 157.121 52.595 1.00 47.93 N
ATOM 17 C5 A A 473 23.813 157.936 53.229 1.00 47.85 C
ATOM 18 C6 A A 473 23.141 157.830 54.460 1.00 47.16 C
ATOM 19 N6 A A 473 23.314 156.819 55.311 1.00 46.90 N
ATOM 20 N1 A A 473 22.272 158.812 54.789 1.00 46.72 N
ATOM 21 C2 A A 473 22.099 159.824 53.934 1.00 46.39 C
ATOM 22 N3 A A 473 22.667 160.034 52.751 1.00 46.37 N
ATOM 23 C4 A A 473 23.522 159.040 52.454 1.00 47.88 C
ATOM 24 P A A 474 23.917 163.225 47.672 1.00 50.09 P
ATOM 25 OP1 A A 474 23.905 162.539 46.354 1.00 48.57 O
ATOM 26 OP2 A A 474 24.608 164.528 47.809 1.00 51.08 O
ATOM 27 O5' A A 474 22.417 163.410 48.179 1.00 49.14 O
TER
ATOM 1 O3' A B 496 14.336 152.674 62.492 1.00 56.15 O
ATOM 2 P A B 497 14.499 154.101 63.209 1.00 57.03 P
ATOM 3 OP1 A B 497 13.782 154.026 64.503 1.00 57.72 O
ATOM 4 OP2 A B 497 14.166 155.179 62.248 1.00 56.48 O
ATOM 5 O5' A B 497 16.043 154.169 63.566 1.00 56.71 O
ATOM 6 C5' A B 497 17.015 154.319 62.549 1.00 58.13 C
ATOM 7 C4' A B 497 18.381 154.186 63.140 1.00 60.54 C
ATOM 8 O4' A B 497 19.371 154.400 62.106 1.00 61.31 O
ATOM 9 C3' A B 497 18.702 155.190 64.232 1.00 62.05 C
ATOM 10 O3' A B 497 19.606 154.631 65.169 1.00 65.26 O
ATOM 11 C2' A B 497 19.290 156.364 63.458 1.00 63.11 C
ATOM 12 O2' A B 497 20.243 157.096 64.207 1.00 63.60 O
ATOM 13 C1' A B 497 19.934 155.686 62.243 1.00 62.15 C
ATOM 14 N9 A B 497 19.696 156.420 60.994 1.00 60.90 N
ATOM 15 C8 A B 497 18.658 157.268 60.685 1.00 59.98 C
ATOM 16 N7 A B 497 18.767 157.827 59.506 1.00 59.91 N
ATOM 17 C5 A B 497 19.946 157.301 58.995 1.00 59.61 C
ATOM 18 C6 A B 497 20.635 157.510 57.783 1.00 58.78 C
ATOM 19 N6 A B 497 20.240 158.353 56.832 1.00 59.39 N
ATOM 20 N1 A B 497 21.769 156.819 57.583 1.00 58.80 N
ATOM 21 C2 A B 497 22.188 155.989 58.539 1.00 59.89 C
ATOM 22 N3 A B 497 21.643 155.717 59.720 1.00 60.37 N
ATOM 23 C4 A B 497 20.512 156.415 59.890 1.00 59.92 C
ATOM 24 P U B 498 19.346 154.849 66.737 1.00 66.59 P
ATOM 25 OP1 U B 498 17.903 154.607 66.987 1.00 66.85 O
ATOM 26 OP2 U B 498 19.949 156.141 67.125 1.00 67.09 O
ATOM 27 O5' U B 498 20.158 153.680 67.450 1.00 70.76 O
TER
Atoms:
OP1: (24.732,157.568,44.395)
OP2: (24.825,155.685,46.135)
C3': (25.179,161.024,48.417)
C1': (24.270,159.866,50.217)
C5': (24.741,159.017,46.904)
O4': (23.692,159.280,49.076)
C8: (24.986,157.741,51.466)
O2': (26.167,161.284,50.663)
C6: (23.141,157.830,54.460)
C5: (23.813,157.936,53.229)
C4: (23.522,159.040,52.454)
P: (24.120,156.848,45.545)
C4': (24.166,159.996,47.900)
C2': (25.615,160.381,49.728)
C2: (22.099,159.824,53.934)
N1: (22.272,158.812,54.789)
N3: (22.667,160.034,52.751)
N6: (23.314,156.819,55.311)
N7: (24.742,157.121,52.595)
N9: (24.278,158.908,51.316)
O5': (23.829,157.933,46.677)
O3': (24.528,162.243,48.788)
OP2: (24.825,155.685,46.135)
C3': (25.179,161.024,48.417)
C1': (24.270,159.866,50.217)
C5': (24.741,159.017,46.904)
O4': (23.692,159.280,49.076)
C8: (24.986,157.741,51.466)
O2': (26.167,161.284,50.663)
C6: (23.141,157.830,54.460)
C5: (23.813,157.936,53.229)
C4: (23.522,159.040,52.454)
P: (24.120,156.848,45.545)
C4': (24.166,159.996,47.900)
C2': (25.615,160.381,49.728)
C2: (22.099,159.824,53.934)
N1: (22.272,158.812,54.789)
N3: (22.667,160.034,52.751)
N6: (23.314,156.819,55.311)
N7: (24.742,157.121,52.595)
N9: (24.278,158.908,51.316)
O5': (23.829,157.933,46.677)
O3': (24.528,162.243,48.788)
OP1: (13.782,154.026,64.503)
OP2: (14.166,155.179,62.248)
C3': (18.702,155.190,64.232)
C1': (19.934,155.686,62.243)
C5': (17.015,154.319,62.549)
O4': (19.371,154.400,62.106)
C8: (18.658,157.268,60.685)
O2': (20.243,157.096,64.207)
C6: (20.635,157.510,57.783)
C5: (19.946,157.301,58.995)
C4: (20.512,156.415,59.890)
P: (14.499,154.101,63.209)
C4': (18.381,154.186,63.140)
C2': (19.290,156.364,63.458)
C2: (22.188,155.989,58.539)
N1: (21.769,156.819,57.583)
N3: (21.643,155.717,59.720)
N6: (20.240,158.353,56.832)
N7: (18.767,157.827,59.506)
N9: (19.696,156.420,60.994)
O5': (16.043,154.169,63.566)
O3': (19.606,154.631,65.169)
OP2: (14.166,155.179,62.248)
C3': (18.702,155.190,64.232)
C1': (19.934,155.686,62.243)
C5': (17.015,154.319,62.549)
O4': (19.371,154.400,62.106)
C8: (18.658,157.268,60.685)
O2': (20.243,157.096,64.207)
C6: (20.635,157.510,57.783)
C5: (19.946,157.301,58.995)
C4: (20.512,156.415,59.890)
P: (14.499,154.101,63.209)
C4': (18.381,154.186,63.140)
C2': (19.290,156.364,63.458)
C2: (22.188,155.989,58.539)
N1: (21.769,156.819,57.583)
N3: (21.643,155.717,59.720)
N6: (20.240,158.353,56.832)
N7: (18.767,157.827,59.506)
N9: (19.696,156.420,60.994)
O5': (16.043,154.169,63.566)
O3': (19.606,154.631,65.169)
Image (generated by PyMOL):