Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A57:A90
Extra
PDB:
ATOM 1 O3' A A 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 2 P A A 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 3 OP1 A A 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 4 OP2 A A 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 5 O5' A A 57 -8.241 38.918 19.235 1.00 21.69 O
ATOM 6 C5' A A 57 -8.148 38.200 20.456 1.00 23.92 C
ATOM 7 C4' A A 57 -6.713 37.844 20.770 1.00 22.69 C
ATOM 8 O4' A A 57 -6.210 36.927 19.762 1.00 22.96 O
ATOM 9 C3' A A 57 -5.737 39.008 20.757 1.00 20.92 C
ATOM 10 O3' A A 57 -5.731 39.747 21.974 1.00 23.11 O
ATOM 11 C2' A A 57 -4.421 38.319 20.442 1.00 17.95 C
ATOM 12 O2' A A 57 -3.917 37.688 21.605 1.00 19.37 O
ATOM 13 C1' A A 57 -4.861 37.231 19.454 1.00 19.57 C
ATOM 14 N9 A A 57 -4.805 37.705 18.054 1.00 19.06 N
ATOM 15 C8 A A 57 -5.786 38.442 17.426 1.00 19.75 C
ATOM 16 N7 A A 57 -5.500 38.740 16.180 1.00 20.49 N
ATOM 17 C5 A A 57 -4.258 38.163 15.964 1.00 19.77 C
ATOM 18 C6 A A 57 -3.418 38.139 14.830 1.00 17.93 C
ATOM 19 N6 A A 57 -3.724 38.725 13.660 1.00 18.06 N
ATOM 20 N1 A A 57 -2.238 37.504 14.947 1.00 18.84 N
ATOM 21 C2 A A 57 -1.932 36.906 16.111 1.00 20.29 C
ATOM 22 N3 A A 57 -2.639 36.866 17.242 1.00 20.51 N
ATOM 23 C4 A A 57 -3.808 37.528 17.112 1.00 17.32 C
ATOM 24 P G A 58 -5.439 41.324 22.019 1.00 25.23 P
ATOM 25 OP1 G A 58 -5.840 41.811 23.363 1.00 26.17 O
ATOM 26 OP2 G A 58 -6.066 41.935 20.819 1.00 24.31 O
ATOM 27 O5' G A 58 -3.847 41.386 21.878 1.00 24.46 O
TER
ATOM 1 O3' U B 89 2.448 34.171 3.321 1.00 23.26 O
ATOM 2 P A B 90 3.105 35.594 3.697 1.00 24.29 P
ATOM 3 OP1 A B 90 3.441 36.203 2.395 1.00 26.11 O
ATOM 4 OP2 A B 90 4.200 35.424 4.707 1.00 22.65 O
ATOM 5 O5' A B 90 1.904 36.393 4.325 1.00 22.51 O
ATOM 6 C5' A B 90 0.766 36.648 3.526 1.00 23.02 C
ATOM 7 C4' A B 90 -0.159 37.629 4.189 1.00 26.24 C
ATOM 8 O4' A B 90 -0.938 36.961 5.210 1.00 22.26 O
ATOM 9 C3' A B 90 0.479 38.787 4.941 1.00 22.10 C
ATOM 10 O3' A B 90 0.983 39.808 4.098 1.00 23.45 O
ATOM 11 C2' A B 90 -0.672 39.252 5.820 1.00 22.26 C
ATOM 12 O2' A B 90 -1.597 40.007 5.043 1.00 23.78 O
ATOM 13 C1' A B 90 -1.324 37.917 6.174 1.00 21.09 C
ATOM 14 N9 A B 90 -1.005 37.398 7.521 1.00 20.50 N
ATOM 15 C8 A B 90 -0.265 36.279 7.833 1.00 19.73 C
ATOM 16 N7 A B 90 -0.200 36.034 9.126 1.00 19.19 N
ATOM 17 C5 A B 90 -0.953 37.057 9.688 1.00 18.45 C
ATOM 18 C6 A B 90 -1.279 37.355 11.020 1.00 18.63 C
ATOM 19 N6 A B 90 -0.846 36.622 12.061 1.00 15.14 N
ATOM 20 N1 A B 90 -2.076 38.440 11.245 1.00 20.34 N
ATOM 21 C2 A B 90 -2.502 39.179 10.198 1.00 20.26 C
ATOM 22 N3 A B 90 -2.255 38.988 8.892 1.00 20.05 N
ATOM 23 C4 A B 90 -1.466 37.903 8.707 1.00 18.97 C
ATOM 24 P A B 91 2.233 40.656 4.628 1.00 24.27 P
ATOM 25 OP1 A B 91 2.630 41.543 3.504 1.00 28.84 O
ATOM 26 OP2 A B 91 3.210 39.697 5.212 1.00 25.82 O
ATOM 27 O5' A B 91 1.616 41.502 5.825 1.00 21.23 O
TER
ATOM 2 P A A 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 3 OP1 A A 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 4 OP2 A A 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 5 O5' A A 57 -8.241 38.918 19.235 1.00 21.69 O
ATOM 6 C5' A A 57 -8.148 38.200 20.456 1.00 23.92 C
ATOM 7 C4' A A 57 -6.713 37.844 20.770 1.00 22.69 C
ATOM 8 O4' A A 57 -6.210 36.927 19.762 1.00 22.96 O
ATOM 9 C3' A A 57 -5.737 39.008 20.757 1.00 20.92 C
ATOM 10 O3' A A 57 -5.731 39.747 21.974 1.00 23.11 O
ATOM 11 C2' A A 57 -4.421 38.319 20.442 1.00 17.95 C
ATOM 12 O2' A A 57 -3.917 37.688 21.605 1.00 19.37 O
ATOM 13 C1' A A 57 -4.861 37.231 19.454 1.00 19.57 C
ATOM 14 N9 A A 57 -4.805 37.705 18.054 1.00 19.06 N
ATOM 15 C8 A A 57 -5.786 38.442 17.426 1.00 19.75 C
ATOM 16 N7 A A 57 -5.500 38.740 16.180 1.00 20.49 N
ATOM 17 C5 A A 57 -4.258 38.163 15.964 1.00 19.77 C
ATOM 18 C6 A A 57 -3.418 38.139 14.830 1.00 17.93 C
ATOM 19 N6 A A 57 -3.724 38.725 13.660 1.00 18.06 N
ATOM 20 N1 A A 57 -2.238 37.504 14.947 1.00 18.84 N
ATOM 21 C2 A A 57 -1.932 36.906 16.111 1.00 20.29 C
ATOM 22 N3 A A 57 -2.639 36.866 17.242 1.00 20.51 N
ATOM 23 C4 A A 57 -3.808 37.528 17.112 1.00 17.32 C
ATOM 24 P G A 58 -5.439 41.324 22.019 1.00 25.23 P
ATOM 25 OP1 G A 58 -5.840 41.811 23.363 1.00 26.17 O
ATOM 26 OP2 G A 58 -6.066 41.935 20.819 1.00 24.31 O
ATOM 27 O5' G A 58 -3.847 41.386 21.878 1.00 24.46 O
TER
ATOM 1 O3' U B 89 2.448 34.171 3.321 1.00 23.26 O
ATOM 2 P A B 90 3.105 35.594 3.697 1.00 24.29 P
ATOM 3 OP1 A B 90 3.441 36.203 2.395 1.00 26.11 O
ATOM 4 OP2 A B 90 4.200 35.424 4.707 1.00 22.65 O
ATOM 5 O5' A B 90 1.904 36.393 4.325 1.00 22.51 O
ATOM 6 C5' A B 90 0.766 36.648 3.526 1.00 23.02 C
ATOM 7 C4' A B 90 -0.159 37.629 4.189 1.00 26.24 C
ATOM 8 O4' A B 90 -0.938 36.961 5.210 1.00 22.26 O
ATOM 9 C3' A B 90 0.479 38.787 4.941 1.00 22.10 C
ATOM 10 O3' A B 90 0.983 39.808 4.098 1.00 23.45 O
ATOM 11 C2' A B 90 -0.672 39.252 5.820 1.00 22.26 C
ATOM 12 O2' A B 90 -1.597 40.007 5.043 1.00 23.78 O
ATOM 13 C1' A B 90 -1.324 37.917 6.174 1.00 21.09 C
ATOM 14 N9 A B 90 -1.005 37.398 7.521 1.00 20.50 N
ATOM 15 C8 A B 90 -0.265 36.279 7.833 1.00 19.73 C
ATOM 16 N7 A B 90 -0.200 36.034 9.126 1.00 19.19 N
ATOM 17 C5 A B 90 -0.953 37.057 9.688 1.00 18.45 C
ATOM 18 C6 A B 90 -1.279 37.355 11.020 1.00 18.63 C
ATOM 19 N6 A B 90 -0.846 36.622 12.061 1.00 15.14 N
ATOM 20 N1 A B 90 -2.076 38.440 11.245 1.00 20.34 N
ATOM 21 C2 A B 90 -2.502 39.179 10.198 1.00 20.26 C
ATOM 22 N3 A B 90 -2.255 38.988 8.892 1.00 20.05 N
ATOM 23 C4 A B 90 -1.466 37.903 8.707 1.00 18.97 C
ATOM 24 P A B 91 2.233 40.656 4.628 1.00 24.27 P
ATOM 25 OP1 A B 91 2.630 41.543 3.504 1.00 28.84 O
ATOM 26 OP2 A B 91 3.210 39.697 5.212 1.00 25.82 O
ATOM 27 O5' A B 91 1.616 41.502 5.825 1.00 21.23 O
TER
Atoms:
OP1: (-10.584,39.712,19.624)
OP2: (-9.453,40.032,17.335)
C3': (-5.737,39.008,20.757)
C1': (-4.861,37.231,19.454)
C5': (-8.148,38.200,20.456)
O4': (-6.210,36.927,19.762)
C8: (-5.786,38.442,17.426)
O2': (-3.917,37.688,21.605)
C6: (-3.418,38.139,14.830)
C5: (-4.258,38.163,15.964)
C4: (-3.808,37.528,17.112)
P: (-9.662,39.227,18.562)
C4': (-6.713,37.844,20.770)
C2': (-4.421,38.319,20.442)
C2: (-1.932,36.906,16.111)
N1: (-2.238,37.504,14.947)
N3: (-2.639,36.866,17.242)
N6: (-3.724,38.725,13.660)
N7: (-5.500,38.740,16.180)
N9: (-4.805,37.705,18.054)
O5': (-8.241,38.918,19.235)
O3': (-5.731,39.747,21.974)
OP2: (-9.453,40.032,17.335)
C3': (-5.737,39.008,20.757)
C1': (-4.861,37.231,19.454)
C5': (-8.148,38.200,20.456)
O4': (-6.210,36.927,19.762)
C8: (-5.786,38.442,17.426)
O2': (-3.917,37.688,21.605)
C6: (-3.418,38.139,14.830)
C5: (-4.258,38.163,15.964)
C4: (-3.808,37.528,17.112)
P: (-9.662,39.227,18.562)
C4': (-6.713,37.844,20.770)
C2': (-4.421,38.319,20.442)
C2: (-1.932,36.906,16.111)
N1: (-2.238,37.504,14.947)
N3: (-2.639,36.866,17.242)
N6: (-3.724,38.725,13.660)
N7: (-5.500,38.740,16.180)
N9: (-4.805,37.705,18.054)
O5': (-8.241,38.918,19.235)
O3': (-5.731,39.747,21.974)
OP1: (3.441,36.203,2.395)
OP2: (4.200,35.424,4.707)
C3': (0.479,38.787,4.941)
C1': (-1.324,37.917,6.174)
C5': (0.766,36.648,3.526)
O4': (-0.938,36.961,5.210)
C8: (-0.265,36.279,7.833)
O2': (-1.597,40.007,5.043)
C6: (-1.279,37.355,11.020)
C5: (-0.953,37.057,9.688)
C4: (-1.466,37.903,8.707)
P: (3.105,35.594,3.697)
C4': (-0.159,37.629,4.189)
C2': (-0.672,39.252,5.820)
C2: (-2.502,39.179,10.198)
N1: (-2.076,38.440,11.245)
N3: (-2.255,38.988,8.892)
N6: (-0.846,36.622,12.061)
N7: (-0.200,36.034,9.126)
N9: (-1.005,37.398,7.521)
O5': (1.904,36.393,4.325)
O3': (0.983,39.808,4.098)
OP2: (4.200,35.424,4.707)
C3': (0.479,38.787,4.941)
C1': (-1.324,37.917,6.174)
C5': (0.766,36.648,3.526)
O4': (-0.938,36.961,5.210)
C8: (-0.265,36.279,7.833)
O2': (-1.597,40.007,5.043)
C6: (-1.279,37.355,11.020)
C5: (-0.953,37.057,9.688)
C4: (-1.466,37.903,8.707)
P: (3.105,35.594,3.697)
C4': (-0.159,37.629,4.189)
C2': (-0.672,39.252,5.820)
C2: (-2.502,39.179,10.198)
N1: (-2.076,38.440,11.245)
N3: (-2.255,38.988,8.892)
N6: (-0.846,36.622,12.061)
N7: (-0.200,36.034,9.126)
N9: (-1.005,37.398,7.521)
O5': (1.904,36.393,4.325)
O3': (0.983,39.808,4.098)
Image (generated by PyMOL):