Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G13:G30
Extra
PDB:
ATOM 1 O3' C A 12 -2.676 -41.965 14.883 1.00 25.66 O
ATOM 2 P A A 13 -4.113 -41.417 14.430 1.00 27.85 P
ATOM 3 OP1 A A 13 -3.911 -39.974 14.155 1.00 28.77 O
ATOM 4 OP2 A A 13 -5.128 -41.848 15.422 1.00 25.56 O
ATOM 5 O5' A A 13 -4.405 -42.143 13.045 1.00 24.21 O
ATOM 6 C5' A A 13 -5.599 -41.868 12.329 1.00 22.06 C
ATOM 7 C4' A A 13 -5.296 -41.659 10.866 1.00 21.01 C
ATOM 8 O4' A A 13 -4.735 -40.343 10.621 1.00 20.28 O
ATOM 9 C3' A A 13 -4.308 -42.642 10.258 1.00 20.79 C
ATOM 10 O3' A A 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 11 C2' A A 13 -3.001 -41.872 10.310 1.00 20.34 C
ATOM 12 O2' A A 13 -2.100 -42.325 9.329 1.00 23.73 O
ATOM 13 C1' A A 13 -3.490 -40.473 9.965 1.00 20.20 C
ATOM 14 N9 A A 13 -2.645 -39.376 10.419 1.00 21.69 N
ATOM 15 C8 A A 13 -2.327 -39.044 11.712 1.00 23.62 C
ATOM 16 N7 A A 13 -1.659 -37.919 11.818 1.00 25.79 N
ATOM 17 C5 A A 13 -1.505 -37.497 10.504 1.00 23.31 C
ATOM 18 C6 A A 13 -0.925 -36.352 9.942 1.00 23.98 C
ATOM 19 N6 A A 13 -0.388 -35.372 10.661 1.00 24.90 N
ATOM 20 N1 A A 13 -0.929 -36.240 8.598 1.00 24.70 N
ATOM 21 C2 A A 13 -1.491 -37.213 7.878 1.00 22.41 C
ATOM 22 N3 A A 13 -2.087 -38.328 8.290 1.00 21.80 N
ATOM 23 C4 A A 13 -2.067 -38.409 9.630 1.00 21.96 C
ATOM 24 P U A 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 25 OP1 U A 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 26 OP2 U A 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 27 O5' U A 14 -6.014 -43.834 7.057 1.00 19.42 O
TER
ATOM 1 O3' G B 29 0.920 -30.139 1.180 1.00 23.62 O
ATOM 2 P A B 30 2.072 -29.126 0.711 1.00 24.02 P
ATOM 3 OP1 A B 30 1.803 -28.635 -0.662 1.00 22.81 O
ATOM 4 OP2 A B 30 3.351 -29.809 1.024 1.00 21.77 O
ATOM 5 O5' A B 30 1.938 -27.905 1.714 1.00 24.73 O
ATOM 6 C5' A B 30 3.078 -27.443 2.415 1.00 25.60 C
ATOM 7 C4' A B 30 2.894 -27.612 3.905 1.00 24.67 C
ATOM 8 O4' A B 30 1.656 -28.299 4.206 1.00 24.19 O
ATOM 9 C3' A B 30 3.925 -28.494 4.581 1.00 25.17 C
ATOM 10 O3' A B 30 5.175 -27.846 4.764 1.00 25.53 O
ATOM 11 C2' A B 30 3.247 -28.810 5.907 1.00 23.81 C
ATOM 12 O2' A B 30 3.430 -27.785 6.853 1.00 25.66 O
ATOM 13 C1' A B 30 1.772 -28.895 5.492 1.00 23.42 C
ATOM 14 N9 A B 30 1.339 -30.289 5.427 1.00 23.65 N
ATOM 15 C8 A B 30 1.404 -31.158 4.372 1.00 24.57 C
ATOM 16 N7 A B 30 1.054 -32.386 4.678 1.00 23.70 N
ATOM 17 C5 A B 30 0.705 -32.310 6.017 1.00 21.96 C
ATOM 18 C6 A B 30 0.263 -33.282 6.946 1.00 23.11 C
ATOM 19 N6 A B 30 0.098 -34.575 6.653 1.00 20.60 N
ATOM 20 N1 A B 30 -0.001 -32.872 8.206 1.00 22.67 N
ATOM 21 C2 A B 30 0.175 -31.576 8.503 1.00 24.53 C
ATOM 22 N3 A B 30 0.591 -30.575 7.721 1.00 22.85 N
ATOM 23 C4 A B 30 0.844 -31.016 6.480 1.00 22.58 C
ATOM 24 P G B 31 6.374 -28.647 5.468 1.00 27.67 P
ATOM 25 OP1 G B 31 7.591 -27.793 5.479 1.00 24.44 O
ATOM 26 OP2 G B 31 6.439 -30.005 4.861 1.00 27.14 O
ATOM 27 O5' G B 31 5.854 -28.839 6.959 1.00 22.05 O
TER
ATOM 2 P A A 13 -4.113 -41.417 14.430 1.00 27.85 P
ATOM 3 OP1 A A 13 -3.911 -39.974 14.155 1.00 28.77 O
ATOM 4 OP2 A A 13 -5.128 -41.848 15.422 1.00 25.56 O
ATOM 5 O5' A A 13 -4.405 -42.143 13.045 1.00 24.21 O
ATOM 6 C5' A A 13 -5.599 -41.868 12.329 1.00 22.06 C
ATOM 7 C4' A A 13 -5.296 -41.659 10.866 1.00 21.01 C
ATOM 8 O4' A A 13 -4.735 -40.343 10.621 1.00 20.28 O
ATOM 9 C3' A A 13 -4.308 -42.642 10.258 1.00 20.79 C
ATOM 10 O3' A A 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 11 C2' A A 13 -3.001 -41.872 10.310 1.00 20.34 C
ATOM 12 O2' A A 13 -2.100 -42.325 9.329 1.00 23.73 O
ATOM 13 C1' A A 13 -3.490 -40.473 9.965 1.00 20.20 C
ATOM 14 N9 A A 13 -2.645 -39.376 10.419 1.00 21.69 N
ATOM 15 C8 A A 13 -2.327 -39.044 11.712 1.00 23.62 C
ATOM 16 N7 A A 13 -1.659 -37.919 11.818 1.00 25.79 N
ATOM 17 C5 A A 13 -1.505 -37.497 10.504 1.00 23.31 C
ATOM 18 C6 A A 13 -0.925 -36.352 9.942 1.00 23.98 C
ATOM 19 N6 A A 13 -0.388 -35.372 10.661 1.00 24.90 N
ATOM 20 N1 A A 13 -0.929 -36.240 8.598 1.00 24.70 N
ATOM 21 C2 A A 13 -1.491 -37.213 7.878 1.00 22.41 C
ATOM 22 N3 A A 13 -2.087 -38.328 8.290 1.00 21.80 N
ATOM 23 C4 A A 13 -2.067 -38.409 9.630 1.00 21.96 C
ATOM 24 P U A 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 25 OP1 U A 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 26 OP2 U A 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 27 O5' U A 14 -6.014 -43.834 7.057 1.00 19.42 O
TER
ATOM 1 O3' G B 29 0.920 -30.139 1.180 1.00 23.62 O
ATOM 2 P A B 30 2.072 -29.126 0.711 1.00 24.02 P
ATOM 3 OP1 A B 30 1.803 -28.635 -0.662 1.00 22.81 O
ATOM 4 OP2 A B 30 3.351 -29.809 1.024 1.00 21.77 O
ATOM 5 O5' A B 30 1.938 -27.905 1.714 1.00 24.73 O
ATOM 6 C5' A B 30 3.078 -27.443 2.415 1.00 25.60 C
ATOM 7 C4' A B 30 2.894 -27.612 3.905 1.00 24.67 C
ATOM 8 O4' A B 30 1.656 -28.299 4.206 1.00 24.19 O
ATOM 9 C3' A B 30 3.925 -28.494 4.581 1.00 25.17 C
ATOM 10 O3' A B 30 5.175 -27.846 4.764 1.00 25.53 O
ATOM 11 C2' A B 30 3.247 -28.810 5.907 1.00 23.81 C
ATOM 12 O2' A B 30 3.430 -27.785 6.853 1.00 25.66 O
ATOM 13 C1' A B 30 1.772 -28.895 5.492 1.00 23.42 C
ATOM 14 N9 A B 30 1.339 -30.289 5.427 1.00 23.65 N
ATOM 15 C8 A B 30 1.404 -31.158 4.372 1.00 24.57 C
ATOM 16 N7 A B 30 1.054 -32.386 4.678 1.00 23.70 N
ATOM 17 C5 A B 30 0.705 -32.310 6.017 1.00 21.96 C
ATOM 18 C6 A B 30 0.263 -33.282 6.946 1.00 23.11 C
ATOM 19 N6 A B 30 0.098 -34.575 6.653 1.00 20.60 N
ATOM 20 N1 A B 30 -0.001 -32.872 8.206 1.00 22.67 N
ATOM 21 C2 A B 30 0.175 -31.576 8.503 1.00 24.53 C
ATOM 22 N3 A B 30 0.591 -30.575 7.721 1.00 22.85 N
ATOM 23 C4 A B 30 0.844 -31.016 6.480 1.00 22.58 C
ATOM 24 P G B 31 6.374 -28.647 5.468 1.00 27.67 P
ATOM 25 OP1 G B 31 7.591 -27.793 5.479 1.00 24.44 O
ATOM 26 OP2 G B 31 6.439 -30.005 4.861 1.00 27.14 O
ATOM 27 O5' G B 31 5.854 -28.839 6.959 1.00 22.05 O
TER
Atoms:
OP1: (-3.911,-39.974,14.155)
OP2: (-5.128,-41.848,15.422)
C3': (-4.308,-42.642,10.258)
C1': (-3.490,-40.473,9.965)
C5': (-5.599,-41.868,12.329)
O4': (-4.735,-40.343,10.621)
C8: (-2.327,-39.044,11.712)
O2': (-2.100,-42.325,9.329)
C6: (-0.925,-36.352,9.942)
C5: (-1.505,-37.497,10.504)
C4: (-2.067,-38.409,9.630)
P: (-4.113,-41.417,14.430)
C4': (-5.296,-41.659,10.866)
C2': (-3.001,-41.872,10.310)
C2: (-1.491,-37.213,7.878)
N1: (-0.929,-36.240,8.598)
N3: (-2.087,-38.328,8.290)
N6: (-0.388,-35.372,10.661)
N7: (-1.659,-37.919,11.818)
N9: (-2.645,-39.376,10.419)
O5': (-4.405,-42.143,13.045)
O3': (-4.672,-42.811,8.904)
OP2: (-5.128,-41.848,15.422)
C3': (-4.308,-42.642,10.258)
C1': (-3.490,-40.473,9.965)
C5': (-5.599,-41.868,12.329)
O4': (-4.735,-40.343,10.621)
C8: (-2.327,-39.044,11.712)
O2': (-2.100,-42.325,9.329)
C6: (-0.925,-36.352,9.942)
C5: (-1.505,-37.497,10.504)
C4: (-2.067,-38.409,9.630)
P: (-4.113,-41.417,14.430)
C4': (-5.296,-41.659,10.866)
C2': (-3.001,-41.872,10.310)
C2: (-1.491,-37.213,7.878)
N1: (-0.929,-36.240,8.598)
N3: (-2.087,-38.328,8.290)
N6: (-0.388,-35.372,10.661)
N7: (-1.659,-37.919,11.818)
N9: (-2.645,-39.376,10.419)
O5': (-4.405,-42.143,13.045)
O3': (-4.672,-42.811,8.904)
OP1: (1.803,-28.635,-0.662)
OP2: (3.351,-29.809,1.024)
C3': (3.925,-28.494,4.581)
C1': (1.772,-28.895,5.492)
C5': (3.078,-27.443,2.415)
O4': (1.656,-28.299,4.206)
C8: (1.404,-31.158,4.372)
O2': (3.430,-27.785,6.853)
C6: (0.263,-33.282,6.946)
C5: (0.705,-32.310,6.017)
C4: (0.844,-31.016,6.480)
P: (2.072,-29.126,0.711)
C4': (2.894,-27.612,3.905)
C2': (3.247,-28.810,5.907)
C2: (0.175,-31.576,8.503)
N1: (-0.001,-32.872,8.206)
N3: (0.591,-30.575,7.721)
N6: (0.098,-34.575,6.653)
N7: (1.054,-32.386,4.678)
N9: (1.339,-30.289,5.427)
O5': (1.938,-27.905,1.714)
O3': (5.175,-27.846,4.764)
OP2: (3.351,-29.809,1.024)
C3': (3.925,-28.494,4.581)
C1': (1.772,-28.895,5.492)
C5': (3.078,-27.443,2.415)
O4': (1.656,-28.299,4.206)
C8: (1.404,-31.158,4.372)
O2': (3.430,-27.785,6.853)
C6: (0.263,-33.282,6.946)
C5: (0.705,-32.310,6.017)
C4: (0.844,-31.016,6.480)
P: (2.072,-29.126,0.711)
C4': (2.894,-27.612,3.905)
C2': (3.247,-28.810,5.907)
C2: (0.175,-31.576,8.503)
N1: (-0.001,-32.872,8.206)
N3: (0.591,-30.575,7.721)
N6: (0.098,-34.575,6.653)
N7: (1.054,-32.386,4.678)
N9: (1.339,-30.289,5.427)
O5': (1.938,-27.905,1.714)
O3': (5.175,-27.846,4.764)
Image (generated by PyMOL):