ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A2653:A521

Extra

PDB:
ATOM 1 O3' A A2652 25.864 138.096 125.731 1.00 45.08 O
ATOM 2 P A A2653 25.440 137.191 124.495 1.00 48.49 P
ATOM 3 OP1 A A2653 24.849 135.959 125.058 1.00 49.77 O
ATOM 4 OP2 A A2653 26.558 137.090 123.526 1.00 47.91 O
ATOM 5 O5' A A2653 24.264 138.037 123.844 1.00 49.55 O
ATOM 6 C5' A A2653 23.086 138.322 124.614 1.00 49.43 C
ATOM 7 C4' A A2653 21.850 137.935 123.855 1.00 47.68 C
ATOM 8 O4' A A2653 21.750 138.768 122.677 1.00 46.39 O
ATOM 9 C3' A A2653 21.765 136.493 123.382 1.00 46.93 C
ATOM 10 O3' A A2653 20.417 136.100 123.391 1.00 46.93 O
ATOM 11 C2' A A2653 22.171 136.581 121.921 1.00 48.46 C
ATOM 12 O2' A A2653 21.501 135.545 121.215 1.00 50.15 O
ATOM 13 C1' A A2653 21.616 137.954 121.537 1.00 46.52 C
ATOM 14 N9 A A2653 22.335 138.603 120.446 1.00 44.91 N
ATOM 15 C8 A A2653 23.620 139.071 120.426 1.00 43.46 C
ATOM 16 N7 A A2653 23.965 139.609 119.284 1.00 42.96 N
ATOM 17 C5 A A2653 22.829 139.480 118.497 1.00 43.14 C
ATOM 18 C6 A A2653 22.543 139.841 117.166 1.00 42.25 C
ATOM 19 N6 A A2653 23.421 140.406 116.343 1.00 40.97 N
ATOM 20 N1 A A2653 21.307 139.583 116.701 1.00 42.43 N
ATOM 21 C2 A A2653 20.429 138.992 117.515 1.00 43.15 C
ATOM 22 N3 A A2653 20.580 138.593 118.772 1.00 43.57 N
ATOM 23 C4 A A2653 21.817 138.869 119.206 1.00 43.52 C
ATOM 24 P G A2654 19.859 135.276 124.620 1.00 47.11 P
ATOM 25 OP1 G A2654 20.877 134.255 124.957 1.00 47.86 O
ATOM 26 OP2 G A2654 18.487 134.860 124.285 1.00 48.24 O
ATOM 27 O5' G A2654 19.760 136.381 125.761 1.00 48.88 O
TER

ATOM 1 O3' A B 520 24.952 141.106 111.554 1.00 42.36 O
ATOM 2 P U B 521 23.895 140.636 112.645 1.00 42.80 P
ATOM 3 OP1 U B 521 22.640 140.332 111.926 1.00 42.72 O
ATOM 4 OP2 U B 521 23.897 141.646 113.706 1.00 43.19 O
ATOM 5 O5' U B 521 24.493 139.279 113.208 1.00 39.93 O
ATOM 6 C5' U B 521 24.771 138.193 112.329 1.00 39.51 C
ATOM 7 C4' U B 521 24.395 136.898 112.976 1.00 38.74 C
ATOM 8 O4' U B 521 25.299 136.626 114.064 1.00 39.85 O
ATOM 9 C3' U B 521 22.995 136.851 113.568 1.00 38.26 C
ATOM 10 O3' U B 521 22.512 135.533 113.464 1.00 36.83 O
ATOM 11 C2' U B 521 23.226 137.127 115.036 1.00 39.22 C
ATOM 12 O2' U B 521 22.227 136.497 115.804 1.00 38.38 O
ATOM 13 C1' U B 521 24.557 136.424 115.247 1.00 39.40 C
ATOM 14 N1 U B 521 25.317 137.013 116.340 1.00 38.96 N
ATOM 15 C2 U B 521 25.243 136.425 117.581 1.00 38.62 C
ATOM 16 O2 U B 521 24.511 135.479 117.844 1.00 39.58 O
ATOM 17 N3 U B 521 26.056 136.996 118.515 1.00 39.01 N
ATOM 18 C4 U B 521 26.892 138.076 118.330 1.00 40.53 C
ATOM 19 O4 U B 521 27.621 138.440 119.245 1.00 41.58 O
ATOM 20 C5 U B 521 26.861 138.645 117.027 1.00 40.66 C
ATOM 21 C6 U B 521 26.096 138.108 116.104 1.00 40.25 C
ATOM 22 P C B 522 21.820 135.083 112.114 1.00 36.31 P
ATOM 23 OP1 C B 522 21.314 136.351 111.573 1.00 37.27 O
ATOM 24 OP2 C B 522 20.900 133.941 112.301 1.00 34.77 O
ATOM 25 O5' C B 522 23.042 134.640 111.204 1.00 38.38 O
TER

Atoms:
OP1: (24.849,135.959,125.058)
OP2: (26.558,137.090,123.526)
C3': (21.765,136.493,123.382)
C1': (21.616,137.954,121.537)
C5': (23.086,138.322,124.614)
O4': (21.750,138.768,122.677)
C8: (23.620,139.071,120.426)
O2': (21.501,135.545,121.215)
C6: (22.543,139.841,117.166)
C5: (22.829,139.480,118.497)
C4: (21.817,138.869,119.206)
P: (25.440,137.191,124.495)
C4': (21.850,137.935,123.855)
C2': (22.171,136.581,121.921)
C2: (20.429,138.992,117.515)
N1: (21.307,139.583,116.701)
N3: (20.580,138.593,118.772)
N6: (23.421,140.406,116.343)
N7: (23.965,139.609,119.284)
N9: (22.335,138.603,120.446)
O5': (24.264,138.037,123.844)
O3': (20.417,136.100,123.391)
C4: (26.892,138.076,118.330)
N3: (26.056,136.996,118.515)
OP1: (22.640,140.332,111.926)
OP2: (23.897,141.646,113.706)
C2: (25.243,136.425,117.581)
C1': (24.557,136.424,115.247)
C3': (22.995,136.851,113.568)
O5': (24.493,139.279,113.208)
O4': (25.299,136.626,114.064)
C5': (24.771,138.193,112.329)
P: (23.895,140.636,112.645)
C4': (24.395,136.898,112.976)
C2': (23.226,137.127,115.036)
O2': (22.227,136.497,115.804)
N1: (25.317,137.013,116.340)
O4: (27.621,138.440,119.245)
O2: (24.511,135.479,117.844)
C6: (26.096,138.108,116.104)
C5: (26.861,138.645,117.027)
O3': (22.512,135.533,113.464)
Image (generated by PyMOL):
PyMOL image
show in jmol