Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12443:12456
Extra
PDB:
ATOM 1 O3' G A2442 7.931 -54.247 32.896 1.00 54.73 O
ATOM 2 P A A2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 3 OP1 A A2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 4 OP2 A A2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 5 O5' A A2443 7.618 -55.972 34.671 1.00 55.82 O
ATOM 6 C5' A A2443 7.851 -56.047 36.070 1.00 55.47 C
ATOM 7 C4' A A2443 7.476 -57.394 36.620 1.00 55.81 C
ATOM 8 O4' A A2443 8.206 -58.438 35.946 1.00 56.17 O
ATOM 9 C3' A A2443 7.782 -57.620 38.074 1.00 55.51 C
ATOM 10 O3' A A2443 6.803 -57.058 38.898 1.00 55.33 O
ATOM 11 C2' A A2443 7.819 -59.129 38.173 1.00 55.95 C
ATOM 12 O2' A A2443 6.498 -59.631 38.307 1.00 56.30 O
ATOM 13 C1' A A2443 8.361 -59.532 36.801 1.00 56.29 C
ATOM 14 N9 A A2443 9.783 -59.899 36.834 1.00 56.18 N
ATOM 15 C8 A A2443 10.868 -59.144 36.435 1.00 55.87 C
ATOM 16 N7 A A2443 12.035 -59.734 36.567 1.00 55.85 N
ATOM 17 C5 A A2443 11.709 -60.978 37.069 1.00 56.19 C
ATOM 18 C6 A A2443 12.498 -62.081 37.412 1.00 56.37 C
ATOM 19 N6 A A2443 13.821 -62.119 37.310 1.00 56.22 N
ATOM 20 N1 A A2443 11.874 -63.182 37.870 1.00 56.73 N
ATOM 21 C2 A A2443 10.528 -63.139 37.975 1.00 56.88 C
ATOM 22 N3 A A2443 9.661 -62.162 37.701 1.00 56.75 N
ATOM 23 C4 A A2443 10.328 -61.092 37.243 1.00 56.39 C
ATOM 24 P A A2444 7.180 -56.478 40.327 1.00 50.75 P
ATOM 25 OP1 A A2444 5.922 -56.034 40.971 1.00 50.70 O
ATOM 26 OP2 A A2444 8.288 -55.483 40.121 1.00 50.32 O
ATOM 27 O5' A A2444 7.758 -57.742 41.083 1.00 50.88 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
ATOM 2 P A A2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 3 OP1 A A2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 4 OP2 A A2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 5 O5' A A2443 7.618 -55.972 34.671 1.00 55.82 O
ATOM 6 C5' A A2443 7.851 -56.047 36.070 1.00 55.47 C
ATOM 7 C4' A A2443 7.476 -57.394 36.620 1.00 55.81 C
ATOM 8 O4' A A2443 8.206 -58.438 35.946 1.00 56.17 O
ATOM 9 C3' A A2443 7.782 -57.620 38.074 1.00 55.51 C
ATOM 10 O3' A A2443 6.803 -57.058 38.898 1.00 55.33 O
ATOM 11 C2' A A2443 7.819 -59.129 38.173 1.00 55.95 C
ATOM 12 O2' A A2443 6.498 -59.631 38.307 1.00 56.30 O
ATOM 13 C1' A A2443 8.361 -59.532 36.801 1.00 56.29 C
ATOM 14 N9 A A2443 9.783 -59.899 36.834 1.00 56.18 N
ATOM 15 C8 A A2443 10.868 -59.144 36.435 1.00 55.87 C
ATOM 16 N7 A A2443 12.035 -59.734 36.567 1.00 55.85 N
ATOM 17 C5 A A2443 11.709 -60.978 37.069 1.00 56.19 C
ATOM 18 C6 A A2443 12.498 -62.081 37.412 1.00 56.37 C
ATOM 19 N6 A A2443 13.821 -62.119 37.310 1.00 56.22 N
ATOM 20 N1 A A2443 11.874 -63.182 37.870 1.00 56.73 N
ATOM 21 C2 A A2443 10.528 -63.139 37.975 1.00 56.88 C
ATOM 22 N3 A A2443 9.661 -62.162 37.701 1.00 56.75 N
ATOM 23 C4 A A2443 10.328 -61.092 37.243 1.00 56.39 C
ATOM 24 P A A2444 7.180 -56.478 40.327 1.00 50.75 P
ATOM 25 OP1 A A2444 5.922 -56.034 40.971 1.00 50.70 O
ATOM 26 OP2 A A2444 8.288 -55.483 40.121 1.00 50.32 O
ATOM 27 O5' A A2444 7.758 -57.742 41.083 1.00 50.88 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
Atoms:
OP1: (5.661,-55.120,33.301)
OP2: (6.825,-53.597,35.022)
C3': (7.782,-57.620,38.074)
C1': (8.361,-59.532,36.801)
C5': (7.851,-56.047,36.070)
O4': (8.206,-58.438,35.946)
C8: (10.868,-59.144,36.435)
O2': (6.498,-59.631,38.307)
C6: (12.498,-62.081,37.412)
C5: (11.709,-60.978,37.069)
C4: (10.328,-61.092,37.243)
P: (6.907,-54.697,34.020)
C4': (7.476,-57.394,36.620)
C2': (7.819,-59.129,38.173)
C2: (10.528,-63.139,37.975)
N1: (11.874,-63.182,37.870)
N3: (9.661,-62.162,37.701)
N6: (13.821,-62.119,37.310)
N7: (12.035,-59.734,36.567)
N9: (9.783,-59.899,36.834)
O5': (7.618,-55.972,34.671)
O3': (6.803,-57.058,38.898)
OP2: (6.825,-53.597,35.022)
C3': (7.782,-57.620,38.074)
C1': (8.361,-59.532,36.801)
C5': (7.851,-56.047,36.070)
O4': (8.206,-58.438,35.946)
C8: (10.868,-59.144,36.435)
O2': (6.498,-59.631,38.307)
C6: (12.498,-62.081,37.412)
C5: (11.709,-60.978,37.069)
C4: (10.328,-61.092,37.243)
P: (6.907,-54.697,34.020)
C4': (7.476,-57.394,36.620)
C2': (7.819,-59.129,38.173)
C2: (10.528,-63.139,37.975)
N1: (11.874,-63.182,37.870)
N3: (9.661,-62.162,37.701)
N6: (13.821,-62.119,37.310)
N7: (12.035,-59.734,36.567)
N9: (9.783,-59.899,36.834)
O5': (7.618,-55.972,34.671)
O3': (6.803,-57.058,38.898)
OP1: (18.844,-75.248,38.688)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
Image (generated by PyMOL):