Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3G9C:R41:R58
Extra
PDB:
ATOM 1 O3' U A 40 -5.040 -10.703 59.553 1.00 72.19 O
ATOM 2 P A A 41 -4.587 -12.128 60.123 1.00 71.29 P
ATOM 3 OP1 A A 41 -4.709 -13.116 59.027 1.00 71.27 O
ATOM 4 OP2 A A 41 -5.295 -12.354 61.402 1.00 71.40 O
ATOM 5 O5' A A 41 -3.029 -11.915 60.422 1.00 69.38 O
ATOM 6 C5' A A 41 -2.290 -10.948 59.686 1.00 66.32 C
ATOM 7 C4' A A 41 -0.944 -10.686 60.339 1.00 64.00 C
ATOM 8 O4' A A 41 -1.133 -9.855 61.513 1.00 62.83 O
ATOM 9 C3' A A 41 -0.215 -11.931 60.826 1.00 62.78 C
ATOM 10 O3' A A 41 1.191 -11.737 60.740 1.00 61.77 O
ATOM 11 C2' A A 41 -0.677 -12.035 62.275 1.00 62.29 C
ATOM 12 O2' A A 41 0.256 -12.717 63.091 1.00 62.48 O
ATOM 13 C1' A A 41 -0.751 -10.566 62.675 1.00 61.87 C
ATOM 14 N9 A A 41 -1.730 -10.296 63.724 1.00 60.83 N
ATOM 15 C8 A A 41 -3.076 -10.118 63.568 1.00 60.64 C
ATOM 16 N7 A A 41 -3.713 -9.889 64.692 1.00 60.31 N
ATOM 17 C5 A A 41 -2.715 -9.919 65.652 1.00 59.94 C
ATOM 18 C6 A A 41 -2.738 -9.747 67.050 1.00 59.73 C
ATOM 19 N6 A A 41 -3.854 -9.500 67.744 1.00 59.37 N
ATOM 20 N1 A A 41 -1.564 -9.839 67.710 1.00 59.63 N
ATOM 21 C2 A A 41 -0.450 -10.086 67.012 1.00 59.58 C
ATOM 22 N3 A A 41 -0.304 -10.266 65.700 1.00 59.83 N
ATOM 23 C4 A A 41 -1.486 -10.169 65.072 1.00 60.17 C
ATOM 24 P U A 42 2.021 -12.422 59.556 1.00 61.11 P
ATOM 25 OP1 U A 42 1.574 -11.816 58.280 1.00 61.13 O
ATOM 26 OP2 U A 42 1.939 -13.888 59.737 1.00 60.68 O
ATOM 27 O5' U A 42 3.522 -11.945 59.850 1.00 60.16 O
TER
ATOM 1 O3' A B 57 -1.651 -10.184 72.138 1.00 57.63 O
ATOM 2 P U B 58 -2.223 -8.682 72.126 1.00 58.03 P
ATOM 3 OP1 U B 58 -2.909 -8.461 73.418 1.00 58.33 O
ATOM 4 OP2 U B 58 -2.943 -8.443 70.853 1.00 57.70 O
ATOM 5 O5' U B 58 -0.897 -7.793 72.114 1.00 58.30 O
ATOM 6 C5' U B 58 -0.072 -7.761 70.960 1.00 59.02 C
ATOM 7 C4' U B 58 1.353 -7.424 71.351 1.00 59.51 C
ATOM 8 O4' U B 58 1.812 -8.343 72.373 1.00 60.02 O
ATOM 9 C3' U B 58 2.366 -7.497 70.215 1.00 59.78 C
ATOM 10 O3' U B 58 3.261 -6.380 70.297 1.00 59.72 O
ATOM 11 C2' U B 58 3.079 -8.821 70.481 1.00 60.33 C
ATOM 12 O2' U B 58 4.397 -8.831 69.976 1.00 60.70 O
ATOM 13 C1' U B 58 3.082 -8.842 72.008 1.00 60.51 C
ATOM 14 N1 U B 58 3.299 -10.182 72.660 1.00 61.05 N
ATOM 15 C2 U B 58 4.517 -10.453 73.266 1.00 61.46 C
ATOM 16 O2 U B 58 5.448 -9.669 73.302 1.00 61.88 O
ATOM 17 N3 U B 58 4.620 -11.699 73.838 1.00 61.71 N
ATOM 18 C4 U B 58 3.648 -12.684 73.873 1.00 61.69 C
ATOM 19 O4 U B 58 3.893 -13.752 74.425 1.00 62.00 O
ATOM 20 C5 U B 58 2.405 -12.334 73.227 1.00 61.56 C
ATOM 21 C6 U B 58 2.280 -11.123 72.662 1.00 61.28 C
ATOM 22 P G B 59 2.987 -4.998 69.525 1.00 59.36 P
ATOM 23 OP1 G B 59 4.135 -4.101 69.788 1.00 59.36 O
ATOM 24 OP2 G B 59 1.610 -4.549 69.837 1.00 59.23 O
ATOM 25 O5' G B 59 3.047 -5.403 67.981 1.00 58.91 O
TER
ATOM 2 P A A 41 -4.587 -12.128 60.123 1.00 71.29 P
ATOM 3 OP1 A A 41 -4.709 -13.116 59.027 1.00 71.27 O
ATOM 4 OP2 A A 41 -5.295 -12.354 61.402 1.00 71.40 O
ATOM 5 O5' A A 41 -3.029 -11.915 60.422 1.00 69.38 O
ATOM 6 C5' A A 41 -2.290 -10.948 59.686 1.00 66.32 C
ATOM 7 C4' A A 41 -0.944 -10.686 60.339 1.00 64.00 C
ATOM 8 O4' A A 41 -1.133 -9.855 61.513 1.00 62.83 O
ATOM 9 C3' A A 41 -0.215 -11.931 60.826 1.00 62.78 C
ATOM 10 O3' A A 41 1.191 -11.737 60.740 1.00 61.77 O
ATOM 11 C2' A A 41 -0.677 -12.035 62.275 1.00 62.29 C
ATOM 12 O2' A A 41 0.256 -12.717 63.091 1.00 62.48 O
ATOM 13 C1' A A 41 -0.751 -10.566 62.675 1.00 61.87 C
ATOM 14 N9 A A 41 -1.730 -10.296 63.724 1.00 60.83 N
ATOM 15 C8 A A 41 -3.076 -10.118 63.568 1.00 60.64 C
ATOM 16 N7 A A 41 -3.713 -9.889 64.692 1.00 60.31 N
ATOM 17 C5 A A 41 -2.715 -9.919 65.652 1.00 59.94 C
ATOM 18 C6 A A 41 -2.738 -9.747 67.050 1.00 59.73 C
ATOM 19 N6 A A 41 -3.854 -9.500 67.744 1.00 59.37 N
ATOM 20 N1 A A 41 -1.564 -9.839 67.710 1.00 59.63 N
ATOM 21 C2 A A 41 -0.450 -10.086 67.012 1.00 59.58 C
ATOM 22 N3 A A 41 -0.304 -10.266 65.700 1.00 59.83 N
ATOM 23 C4 A A 41 -1.486 -10.169 65.072 1.00 60.17 C
ATOM 24 P U A 42 2.021 -12.422 59.556 1.00 61.11 P
ATOM 25 OP1 U A 42 1.574 -11.816 58.280 1.00 61.13 O
ATOM 26 OP2 U A 42 1.939 -13.888 59.737 1.00 60.68 O
ATOM 27 O5' U A 42 3.522 -11.945 59.850 1.00 60.16 O
TER
ATOM 1 O3' A B 57 -1.651 -10.184 72.138 1.00 57.63 O
ATOM 2 P U B 58 -2.223 -8.682 72.126 1.00 58.03 P
ATOM 3 OP1 U B 58 -2.909 -8.461 73.418 1.00 58.33 O
ATOM 4 OP2 U B 58 -2.943 -8.443 70.853 1.00 57.70 O
ATOM 5 O5' U B 58 -0.897 -7.793 72.114 1.00 58.30 O
ATOM 6 C5' U B 58 -0.072 -7.761 70.960 1.00 59.02 C
ATOM 7 C4' U B 58 1.353 -7.424 71.351 1.00 59.51 C
ATOM 8 O4' U B 58 1.812 -8.343 72.373 1.00 60.02 O
ATOM 9 C3' U B 58 2.366 -7.497 70.215 1.00 59.78 C
ATOM 10 O3' U B 58 3.261 -6.380 70.297 1.00 59.72 O
ATOM 11 C2' U B 58 3.079 -8.821 70.481 1.00 60.33 C
ATOM 12 O2' U B 58 4.397 -8.831 69.976 1.00 60.70 O
ATOM 13 C1' U B 58 3.082 -8.842 72.008 1.00 60.51 C
ATOM 14 N1 U B 58 3.299 -10.182 72.660 1.00 61.05 N
ATOM 15 C2 U B 58 4.517 -10.453 73.266 1.00 61.46 C
ATOM 16 O2 U B 58 5.448 -9.669 73.302 1.00 61.88 O
ATOM 17 N3 U B 58 4.620 -11.699 73.838 1.00 61.71 N
ATOM 18 C4 U B 58 3.648 -12.684 73.873 1.00 61.69 C
ATOM 19 O4 U B 58 3.893 -13.752 74.425 1.00 62.00 O
ATOM 20 C5 U B 58 2.405 -12.334 73.227 1.00 61.56 C
ATOM 21 C6 U B 58 2.280 -11.123 72.662 1.00 61.28 C
ATOM 22 P G B 59 2.987 -4.998 69.525 1.00 59.36 P
ATOM 23 OP1 G B 59 4.135 -4.101 69.788 1.00 59.36 O
ATOM 24 OP2 G B 59 1.610 -4.549 69.837 1.00 59.23 O
ATOM 25 O5' G B 59 3.047 -5.403 67.981 1.00 58.91 O
TER
Atoms:
OP1: (-4.709,-13.116,59.027)
OP2: (-5.295,-12.354,61.402)
C3': (-0.215,-11.931,60.826)
C1': (-0.751,-10.566,62.675)
C5': (-2.290,-10.948,59.686)
O4': (-1.133,-9.855,61.513)
C8: (-3.076,-10.118,63.568)
O2': (0.256,-12.717,63.091)
C6: (-2.738,-9.747,67.050)
C5: (-2.715,-9.919,65.652)
C4: (-1.486,-10.169,65.072)
P: (-4.587,-12.128,60.123)
C4': (-0.944,-10.686,60.339)
C2': (-0.677,-12.035,62.275)
C2: (-0.450,-10.086,67.012)
N1: (-1.564,-9.839,67.710)
N3: (-0.304,-10.266,65.700)
N6: (-3.854,-9.500,67.744)
N7: (-3.713,-9.889,64.692)
N9: (-1.730,-10.296,63.724)
O5': (-3.029,-11.915,60.422)
O3': (1.191,-11.737,60.740)
OP2: (-5.295,-12.354,61.402)
C3': (-0.215,-11.931,60.826)
C1': (-0.751,-10.566,62.675)
C5': (-2.290,-10.948,59.686)
O4': (-1.133,-9.855,61.513)
C8: (-3.076,-10.118,63.568)
O2': (0.256,-12.717,63.091)
C6: (-2.738,-9.747,67.050)
C5: (-2.715,-9.919,65.652)
C4: (-1.486,-10.169,65.072)
P: (-4.587,-12.128,60.123)
C4': (-0.944,-10.686,60.339)
C2': (-0.677,-12.035,62.275)
C2: (-0.450,-10.086,67.012)
N1: (-1.564,-9.839,67.710)
N3: (-0.304,-10.266,65.700)
N6: (-3.854,-9.500,67.744)
N7: (-3.713,-9.889,64.692)
N9: (-1.730,-10.296,63.724)
O5': (-3.029,-11.915,60.422)
O3': (1.191,-11.737,60.740)
C4: (3.648,-12.684,73.873)
N3: (4.620,-11.699,73.838)
OP1: (-2.909,-8.461,73.418)
OP2: (-2.943,-8.443,70.853)
C2: (4.517,-10.453,73.266)
C1': (3.082,-8.842,72.008)
C3': (2.366,-7.497,70.215)
O5': (-0.897,-7.793,72.114)
O4': (1.812,-8.343,72.373)
C5': (-0.072,-7.761,70.960)
P: (-2.223,-8.682,72.126)
C4': (1.353,-7.424,71.351)
C2': (3.079,-8.821,70.481)
O2': (4.397,-8.831,69.976)
N1: (3.299,-10.182,72.660)
O4: (3.893,-13.752,74.425)
O2: (5.448,-9.669,73.302)
C6: (2.280,-11.123,72.662)
C5: (2.405,-12.334,73.227)
O3': (3.261,-6.380,70.297)
N3: (4.620,-11.699,73.838)
OP1: (-2.909,-8.461,73.418)
OP2: (-2.943,-8.443,70.853)
C2: (4.517,-10.453,73.266)
C1': (3.082,-8.842,72.008)
C3': (2.366,-7.497,70.215)
O5': (-0.897,-7.793,72.114)
O4': (1.812,-8.343,72.373)
C5': (-0.072,-7.761,70.960)
P: (-2.223,-8.682,72.126)
C4': (1.353,-7.424,71.351)
C2': (3.079,-8.821,70.481)
O2': (4.397,-8.831,69.976)
N1: (3.299,-10.182,72.660)
O4: (3.893,-13.752,74.425)
O2: (5.448,-9.669,73.302)
C6: (2.280,-11.123,72.662)
C5: (2.405,-12.334,73.227)
O3': (3.261,-6.380,70.297)
Image (generated by PyMOL):