ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3KNK:A1026:A1095

Extra

PDB:
ATOM 1 O3' U A1025 33.067 -89.932 117.303 1.00106.63 O
ATOM 2 P A A1026 33.428 -88.369 117.191 1.00108.73 P
ATOM 3 OP1 A A1026 32.930 -87.693 118.417 1.00105.36 O
ATOM 4 OP2 A A1026 32.965 -87.907 115.853 1.00107.86 O
ATOM 5 O5' A A1026 35.025 -88.330 117.210 1.00110.02 O
ATOM 6 C5' A A1026 35.725 -87.131 117.558 1.00 99.98 C
ATOM 7 C4' A A1026 37.040 -87.051 116.824 1.00 95.44 C
ATOM 8 O4' A A1026 37.120 -88.141 115.876 1.00 94.41 O
ATOM 9 C3' A A1026 37.201 -85.773 116.003 1.00 95.23 C
ATOM 10 O3' A A1026 37.818 -84.626 116.639 1.00 89.15 O
ATOM 11 C2' A A1026 38.097 -86.206 114.842 1.00 99.86 C
ATOM 12 O2' A A1026 39.473 -85.991 115.074 1.00102.23 O
ATOM 13 C1' A A1026 37.812 -87.710 114.726 1.00 99.98 C
ATOM 14 N9 A A1026 37.069 -88.127 113.538 1.00 99.66 N
ATOM 15 C8 A A1026 35.863 -88.781 113.479 1.00102.70 C
ATOM 16 N7 A A1026 35.447 -89.014 112.259 1.00103.65 N
ATOM 17 C5 A A1026 36.447 -88.481 111.459 1.00103.68 C
ATOM 18 C6 A A1026 36.598 -88.403 110.065 1.00104.86 C
ATOM 19 N6 A A1026 35.700 -88.879 109.200 1.00107.35 N
ATOM 20 N1 A A1026 37.715 -87.811 109.584 1.00100.48 N
ATOM 21 C2 A A1026 38.609 -87.331 110.455 1.00101.79 C
ATOM 22 N3 A A1026 38.577 -87.340 111.788 1.00104.42 N
ATOM 23 C4 A A1026 37.455 -87.937 112.232 1.00102.52 C
ATOM 24 P A A1027 38.560 -84.722 118.090 1.00 94.08 P
ATOM 25 OP1 A A1027 37.688 -84.165 119.159 1.00 93.73 O
ATOM 26 OP2 A A1027 39.916 -84.140 117.888 1.00 90.61 O
ATOM 27 O5' A A1027 38.820 -86.268 118.406 1.00 99.71 O
TER

ATOM 1 O3' U B1094 38.960 -90.060 105.477 1.00109.27 O
ATOM 2 P U B1095 37.832 -88.907 105.527 1.00112.55 P
ATOM 3 OP1 U B1095 38.313 -87.760 104.705 1.00118.05 O
ATOM 4 OP2 U B1095 37.360 -88.656 106.913 1.00108.64 O
ATOM 5 O5' U B1095 36.618 -89.598 104.763 1.00119.36 O
ATOM 6 C5' U B1095 36.736 -90.939 104.275 1.00113.62 C
ATOM 7 C4' U B1095 35.373 -91.530 104.021 1.00112.96 C
ATOM 8 O4' U B1095 34.401 -90.468 103.939 1.00110.86 O
ATOM 9 C3' U B1095 35.337 -92.313 102.715 1.00115.33 C
ATOM 10 O3' U B1095 35.175 -93.684 103.044 1.00116.93 O
ATOM 11 C2' U B1095 34.134 -91.769 101.939 1.00111.84 C
ATOM 12 O2' U B1095 33.017 -92.635 101.871 1.00104.31 O
ATOM 13 C1' U B1095 33.797 -90.466 102.672 1.00113.28 C
ATOM 14 N1 U B1095 34.093 -89.177 102.018 1.00118.35 N
ATOM 15 C2 U B1095 33.331 -88.075 102.409 1.00119.32 C
ATOM 16 O2 U B1095 32.501 -88.124 103.313 1.00120.86 O
ATOM 17 N3 U B1095 33.583 -86.916 101.719 1.00114.35 N
ATOM 18 C4 U B1095 34.501 -86.731 100.704 1.00107.60 C
ATOM 19 O4 U B1095 34.500 -85.673 100.077 1.00100.88 O
ATOM 20 C5 U B1095 35.283 -87.885 100.388 1.00108.94 C
ATOM 21 C6 U B1095 35.062 -89.040 101.034 1.00115.37 C
ATOM 22 P A B1096 35.875 -94.803 102.133 1.00122.41 P
ATOM 23 OP1 A B1096 35.336 -94.605 100.763 1.00117.96 O
ATOM 24 OP2 A B1096 35.703 -96.120 102.803 1.00107.10 O
ATOM 25 O5' A B1096 37.415 -94.393 102.122 1.00115.90 O
TER

Atoms:
OP1: (32.930,-87.693,118.417)
OP2: (32.965,-87.907,115.853)
C3': (37.201,-85.773,116.003)
C1': (37.812,-87.710,114.726)
C5': (35.725,-87.131,117.558)
O4': (37.120,-88.141,115.876)
C8: (35.863,-88.781,113.479)
O2': (39.473,-85.991,115.074)
C6: (36.598,-88.403,110.065)
C5: (36.447,-88.481,111.459)
C4: (37.455,-87.937,112.232)
P: (33.428,-88.369,117.191)
C4': (37.040,-87.051,116.824)
C2': (38.097,-86.206,114.842)
C2: (38.609,-87.331,110.455)
N1: (37.715,-87.811,109.584)
N3: (38.577,-87.340,111.788)
N6: (35.700,-88.879,109.200)
N7: (35.447,-89.014,112.259)
N9: (37.069,-88.127,113.538)
O5': (35.025,-88.330,117.210)
O3': (37.818,-84.626,116.639)
C4: (34.501,-86.731,100.704)
N3: (33.583,-86.916,101.719)
OP1: (38.313,-87.760,104.705)
OP2: (37.360,-88.656,106.913)
C2: (33.331,-88.075,102.409)
C1': (33.797,-90.466,102.672)
C3': (35.337,-92.313,102.715)
O5': (36.618,-89.598,104.763)
O4': (34.401,-90.468,103.939)
C5': (36.736,-90.939,104.275)
P: (37.832,-88.907,105.527)
C4': (35.373,-91.530,104.021)
C2': (34.134,-91.769,101.939)
O2': (33.017,-92.635,101.871)
N1: (34.093,-89.177,102.018)
O4: (34.500,-85.673,100.077)
O2: (32.501,-88.124,103.313)
C6: (35.062,-89.040,101.034)
C5: (35.283,-87.885,100.388)
O3': (35.175,-93.684,103.044)
Image (generated by PyMOL):
PyMOL image
show in jmol