ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3SLM:A21:A48

Extra

PDB:
ATOM 1 O3' A A 20 -13.994 6.654 23.957 1.00 39.53 O
ATOM 2 P A A 21 -15.405 5.888 23.998 1.00 42.95 P
ATOM 3 OP1 A A 21 -16.094 6.167 22.714 1.00 42.39 O
ATOM 4 OP2 A A 21 -16.072 6.266 25.260 1.00 36.19 O
ATOM 5 O5' A A 21 -14.956 4.363 24.056 1.00 39.97 O
ATOM 6 C5' A A 21 -13.870 3.911 23.260 1.00 33.16 C
ATOM 7 C4' A A 21 -13.591 2.446 23.461 1.00 34.45 C
ATOM 8 O4' A A 21 -12.902 2.245 24.728 1.00 34.03 O
ATOM 9 C3' A A 21 -14.818 1.531 23.498 1.00 37.69 C
ATOM 10 O3' A A 21 -14.472 0.284 22.897 1.00 44.92 O
ATOM 11 C2' A A 21 -15.011 1.314 24.988 1.00 30.91 C
ATOM 12 O2' A A 21 -15.733 0.158 25.316 1.00 30.77 O
ATOM 13 C1' A A 21 -13.561 1.224 25.440 1.00 30.81 C
ATOM 14 N9 A A 21 -13.359 1.433 26.871 1.00 28.53 N
ATOM 15 C8 A A 21 -13.451 2.589 27.606 1.00 32.07 C
ATOM 16 N7 A A 21 -13.230 2.401 28.889 1.00 32.15 N
ATOM 17 C5 A A 21 -12.983 1.037 28.992 1.00 25.36 C
ATOM 18 C6 A A 21 -12.687 0.214 30.087 1.00 24.16 C
ATOM 19 N6 A A 21 -12.567 0.660 31.334 1.00 27.13 N
ATOM 20 N1 A A 21 -12.510 -1.099 29.856 1.00 26.91 N
ATOM 21 C2 A A 21 -12.616 -1.535 28.592 1.00 31.82 C
ATOM 22 N3 A A 21 -12.883 -0.859 27.473 1.00 28.45 N
ATOM 23 C4 A A 21 -13.059 0.437 27.755 1.00 25.71 C
ATOM 24 P U A 22 -15.498 -0.461 21.921 1.00 41.54 P
ATOM 25 OP1 U A 22 -16.843 0.123 22.168 1.00 39.88 O
ATOM 26 OP2 U A 22 -15.300 -1.919 22.122 1.00 38.67 O
ATOM 27 O5' U A 22 -14.975 -0.034 20.482 1.00 33.95 O
TER

ATOM 1 O3' C B 47 -10.626 -1.297 35.768 1.00 45.62 O
ATOM 2 P U B 48 -12.045 -0.587 36.087 1.00 54.65 P
ATOM 3 OP1 U B 48 -11.837 0.288 37.271 1.00 53.40 O
ATOM 4 OP2 U B 48 -13.070 -1.664 36.158 1.00 33.69 O
ATOM 5 O5' U B 48 -12.303 0.308 34.802 1.00 38.37 O
ATOM 6 C5' U B 48 -11.349 1.267 34.400 1.00 36.42 C
ATOM 7 C4' U B 48 -11.966 2.617 34.184 1.00 39.63 C
ATOM 8 O4' U B 48 -13.387 2.581 34.464 1.00 43.70 O
ATOM 9 C3' U B 48 -11.448 3.722 35.073 1.00 40.06 C
ATOM 10 O3' U B 48 -10.197 4.211 34.636 1.00 38.25 O
ATOM 11 C2' U B 48 -12.576 4.750 35.006 1.00 38.45 C
ATOM 12 O2' U B 48 -12.509 5.488 33.796 1.00 41.26 O
ATOM 13 C1' U B 48 -13.808 3.846 34.940 1.00 40.69 C
ATOM 14 N1 U B 48 -14.435 3.664 36.259 1.00 49.94 N
ATOM 15 C2 U B 48 -15.599 4.360 36.537 1.00 50.35 C
ATOM 16 O2 U B 48 -16.123 5.128 35.741 1.00 52.34 O
ATOM 17 N3 U B 48 -16.117 4.112 37.790 1.00 49.86 N
ATOM 18 C4 U B 48 -15.610 3.262 38.761 1.00 44.43 C
ATOM 19 O4 U B 48 -16.185 3.138 39.846 1.00 40.40 O
ATOM 20 C5 U B 48 -14.410 2.583 38.384 1.00 48.98 C
ATOM 21 C6 U B 48 -13.881 2.799 37.177 1.00 48.75 C
ATOM 22 P A B 49 -9.212 4.938 35.660 1.00 32.80 P
ATOM 23 OP1 A B 49 -9.344 4.241 36.963 1.00 33.12 O
ATOM 24 OP2 A B 49 -9.511 6.389 35.588 1.00 38.60 O
ATOM 25 O5' A B 49 -7.785 4.646 35.032 1.00 33.55 O
TER

Atoms:
OP1: (-16.094,6.167,22.714)
OP2: (-16.072,6.266,25.260)
C3': (-14.818,1.531,23.498)
C1': (-13.561,1.224,25.440)
C5': (-13.870,3.911,23.260)
O4': (-12.902,2.245,24.728)
C8: (-13.451,2.589,27.606)
O2': (-15.733,0.158,25.316)
C6: (-12.687,0.214,30.087)
C5: (-12.983,1.037,28.992)
C4: (-13.059,0.437,27.755)
P: (-15.405,5.888,23.998)
C4': (-13.591,2.446,23.461)
C2': (-15.011,1.314,24.988)
C2: (-12.616,-1.535,28.592)
N1: (-12.510,-1.099,29.856)
N3: (-12.883,-0.859,27.473)
N6: (-12.567,0.660,31.334)
N7: (-13.230,2.401,28.889)
N9: (-13.359,1.433,26.871)
O5': (-14.956,4.363,24.056)
O3': (-14.472,0.284,22.897)
C4: (-15.610,3.262,38.761)
N3: (-16.117,4.112,37.790)
OP1: (-11.837,0.288,37.271)
OP2: (-13.070,-1.664,36.158)
C2: (-15.599,4.360,36.537)
C1': (-13.808,3.846,34.940)
C3': (-11.448,3.722,35.073)
O5': (-12.303,0.308,34.802)
O4': (-13.387,2.581,34.464)
C5': (-11.349,1.267,34.400)
P: (-12.045,-0.587,36.087)
C4': (-11.966,2.617,34.184)
C2': (-12.576,4.750,35.006)
O2': (-12.509,5.488,33.796)
N1: (-14.435,3.664,36.259)
O4: (-16.185,3.138,39.846)
O2: (-16.123,5.128,35.741)
C6: (-13.881,2.799,37.177)
C5: (-14.410,2.583,38.384)
O3': (-10.197,4.211,34.636)
Image (generated by PyMOL):
PyMOL image
show in jmol