Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:21009:21006
Extra
PDB:
ATOM 1 O3' A A1008 -54.708 0.994 98.055 1.00 56.93 O
ATOM 2 P A A1009 -53.883 0.766 99.398 1.00 59.16 P
ATOM 3 OP1 A A1009 -53.020 -0.403 99.171 1.00 59.43 O
ATOM 4 OP2 A A1009 -54.820 0.728 100.515 1.00 59.94 O
ATOM 5 O5' A A1009 -53.022 2.080 99.482 1.00 58.26 O
ATOM 6 C5' A A1009 -53.639 3.333 99.647 1.00 57.90 C
ATOM 7 C4' A A1009 -53.340 3.912 101.005 1.00 58.08 C
ATOM 8 O4' A A1009 -51.921 4.200 101.124 1.00 57.57 O
ATOM 9 C3' A A1009 -54.008 5.238 101.311 1.00 57.81 C
ATOM 10 O3' A A1009 -55.359 5.108 101.702 1.00 58.49 O
ATOM 11 C2' A A1009 -53.110 5.836 102.379 1.00 57.72 C
ATOM 12 O2' A A1009 -53.385 5.243 103.643 1.00 58.65 O
ATOM 13 C1' A A1009 -51.732 5.360 101.907 1.00 57.31 C
ATOM 14 N9 A A1009 -51.024 6.374 101.083 1.00 56.31 N
ATOM 15 C8 A A1009 -51.229 6.670 99.754 1.00 55.70 C
ATOM 16 N7 A A1009 -50.469 7.609 99.227 1.00 54.88 N
ATOM 17 C5 A A1009 -49.674 7.947 100.306 1.00 54.95 C
ATOM 18 C6 A A1009 -48.661 8.865 100.396 1.00 54.35 C
ATOM 19 N6 A A1009 -48.286 9.581 99.356 1.00 53.57 N
ATOM 20 N1 A A1009 -48.058 9.012 101.574 1.00 54.63 N
ATOM 21 C2 A A1009 -48.440 8.269 102.601 1.00 55.48 C
ATOM 22 N3 A A1009 -49.380 7.344 102.658 1.00 56.13 N
ATOM 23 C4 A A1009 -49.973 7.217 101.446 1.00 55.81 C
ATOM 24 P C A1010 -56.396 6.154 101.127 1.00 67.68 P
ATOM 25 OP1 C A1010 -55.822 6.623 99.825 1.00 66.75 O
ATOM 26 OP2 C A1010 -56.652 7.146 102.193 1.00 67.81 O
ATOM 27 O5' C A1010 -57.704 5.280 100.865 1.00 68.44 O
TER
ATOM 1 O3' A B1005 -43.797 10.992 99.134 1.00 61.35 O
ATOM 2 P U B1006 -45.035 11.719 98.453 1.00 54.17 P
ATOM 3 OP1 U B1006 -44.523 12.941 97.782 1.00 53.40 O
ATOM 4 OP2 U B1006 -46.098 11.880 99.524 1.00 54.74 O
ATOM 5 O5' U B1006 -45.514 10.647 97.365 1.00 54.27 O
ATOM 6 C5' U B1006 -44.608 10.047 96.472 1.00 54.01 C
ATOM 7 C4' U B1006 -44.375 8.592 96.804 1.00 54.66 C
ATOM 8 O4' U B1006 -43.911 8.450 98.161 1.00 55.11 O
ATOM 9 C3' U B1006 -45.570 7.655 96.751 1.00 55.26 C
ATOM 10 O3' U B1006 -45.917 7.277 95.426 1.00 55.06 O
ATOM 11 C2' U B1006 -45.095 6.468 97.592 1.00 55.97 C
ATOM 12 O2' U B1006 -44.378 5.548 96.778 1.00 55.96 O
ATOM 13 C1' U B1006 -44.092 7.113 98.549 1.00 55.85 C
ATOM 14 N1 U B1006 -44.472 7.043 99.962 1.00 56.50 N
ATOM 15 C2 U B1006 -44.576 5.790 100.546 1.00 57.32 C
ATOM 16 O2 U B1006 -44.478 4.727 99.989 1.00 57.56 O
ATOM 17 N3 U B1006 -44.849 5.782 101.874 1.00 57.93 N
ATOM 18 C4 U B1006 -45.023 6.877 102.691 1.00 57.84 C
ATOM 19 O4 U B1006 -45.307 6.664 103.879 1.00 58.53 O
ATOM 20 C5 U B1006 -44.872 8.145 102.023 1.00 56.96 C
ATOM 21 C6 U B1006 -44.582 8.177 100.716 1.00 56.34 C
ATOM 22 P A B1007 -47.445 6.968 95.068 1.00 64.80 P
ATOM 23 OP1 A B1007 -47.597 7.010 93.589 1.00 64.38 O
ATOM 24 OP2 A B1007 -48.211 7.873 95.875 1.00 64.86 O
ATOM 25 O5' A B1007 -47.680 5.489 95.618 1.00 65.67 O
TER
ATOM 2 P A A1009 -53.883 0.766 99.398 1.00 59.16 P
ATOM 3 OP1 A A1009 -53.020 -0.403 99.171 1.00 59.43 O
ATOM 4 OP2 A A1009 -54.820 0.728 100.515 1.00 59.94 O
ATOM 5 O5' A A1009 -53.022 2.080 99.482 1.00 58.26 O
ATOM 6 C5' A A1009 -53.639 3.333 99.647 1.00 57.90 C
ATOM 7 C4' A A1009 -53.340 3.912 101.005 1.00 58.08 C
ATOM 8 O4' A A1009 -51.921 4.200 101.124 1.00 57.57 O
ATOM 9 C3' A A1009 -54.008 5.238 101.311 1.00 57.81 C
ATOM 10 O3' A A1009 -55.359 5.108 101.702 1.00 58.49 O
ATOM 11 C2' A A1009 -53.110 5.836 102.379 1.00 57.72 C
ATOM 12 O2' A A1009 -53.385 5.243 103.643 1.00 58.65 O
ATOM 13 C1' A A1009 -51.732 5.360 101.907 1.00 57.31 C
ATOM 14 N9 A A1009 -51.024 6.374 101.083 1.00 56.31 N
ATOM 15 C8 A A1009 -51.229 6.670 99.754 1.00 55.70 C
ATOM 16 N7 A A1009 -50.469 7.609 99.227 1.00 54.88 N
ATOM 17 C5 A A1009 -49.674 7.947 100.306 1.00 54.95 C
ATOM 18 C6 A A1009 -48.661 8.865 100.396 1.00 54.35 C
ATOM 19 N6 A A1009 -48.286 9.581 99.356 1.00 53.57 N
ATOM 20 N1 A A1009 -48.058 9.012 101.574 1.00 54.63 N
ATOM 21 C2 A A1009 -48.440 8.269 102.601 1.00 55.48 C
ATOM 22 N3 A A1009 -49.380 7.344 102.658 1.00 56.13 N
ATOM 23 C4 A A1009 -49.973 7.217 101.446 1.00 55.81 C
ATOM 24 P C A1010 -56.396 6.154 101.127 1.00 67.68 P
ATOM 25 OP1 C A1010 -55.822 6.623 99.825 1.00 66.75 O
ATOM 26 OP2 C A1010 -56.652 7.146 102.193 1.00 67.81 O
ATOM 27 O5' C A1010 -57.704 5.280 100.865 1.00 68.44 O
TER
ATOM 1 O3' A B1005 -43.797 10.992 99.134 1.00 61.35 O
ATOM 2 P U B1006 -45.035 11.719 98.453 1.00 54.17 P
ATOM 3 OP1 U B1006 -44.523 12.941 97.782 1.00 53.40 O
ATOM 4 OP2 U B1006 -46.098 11.880 99.524 1.00 54.74 O
ATOM 5 O5' U B1006 -45.514 10.647 97.365 1.00 54.27 O
ATOM 6 C5' U B1006 -44.608 10.047 96.472 1.00 54.01 C
ATOM 7 C4' U B1006 -44.375 8.592 96.804 1.00 54.66 C
ATOM 8 O4' U B1006 -43.911 8.450 98.161 1.00 55.11 O
ATOM 9 C3' U B1006 -45.570 7.655 96.751 1.00 55.26 C
ATOM 10 O3' U B1006 -45.917 7.277 95.426 1.00 55.06 O
ATOM 11 C2' U B1006 -45.095 6.468 97.592 1.00 55.97 C
ATOM 12 O2' U B1006 -44.378 5.548 96.778 1.00 55.96 O
ATOM 13 C1' U B1006 -44.092 7.113 98.549 1.00 55.85 C
ATOM 14 N1 U B1006 -44.472 7.043 99.962 1.00 56.50 N
ATOM 15 C2 U B1006 -44.576 5.790 100.546 1.00 57.32 C
ATOM 16 O2 U B1006 -44.478 4.727 99.989 1.00 57.56 O
ATOM 17 N3 U B1006 -44.849 5.782 101.874 1.00 57.93 N
ATOM 18 C4 U B1006 -45.023 6.877 102.691 1.00 57.84 C
ATOM 19 O4 U B1006 -45.307 6.664 103.879 1.00 58.53 O
ATOM 20 C5 U B1006 -44.872 8.145 102.023 1.00 56.96 C
ATOM 21 C6 U B1006 -44.582 8.177 100.716 1.00 56.34 C
ATOM 22 P A B1007 -47.445 6.968 95.068 1.00 64.80 P
ATOM 23 OP1 A B1007 -47.597 7.010 93.589 1.00 64.38 O
ATOM 24 OP2 A B1007 -48.211 7.873 95.875 1.00 64.86 O
ATOM 25 O5' A B1007 -47.680 5.489 95.618 1.00 65.67 O
TER
Atoms:
OP1: (-53.020,-0.403,99.171)
OP2: (-54.820,0.728,100.515)
C3': (-54.008,5.238,101.311)
C1': (-51.732,5.360,101.907)
C5': (-53.639,3.333,99.647)
O4': (-51.921,4.200,101.124)
C8: (-51.229,6.670,99.754)
O2': (-53.385,5.243,103.643)
C6: (-48.661,8.865,100.396)
C5: (-49.674,7.947,100.306)
C4: (-49.973,7.217,101.446)
P: (-53.883,0.766,99.398)
C4': (-53.340,3.912,101.005)
C2': (-53.110,5.836,102.379)
C2: (-48.440,8.269,102.601)
N1: (-48.058,9.012,101.574)
N3: (-49.380,7.344,102.658)
N6: (-48.286,9.581,99.356)
N7: (-50.469,7.609,99.227)
N9: (-51.024,6.374,101.083)
O5': (-53.022,2.080,99.482)
O3': (-55.359,5.108,101.702)
OP2: (-54.820,0.728,100.515)
C3': (-54.008,5.238,101.311)
C1': (-51.732,5.360,101.907)
C5': (-53.639,3.333,99.647)
O4': (-51.921,4.200,101.124)
C8: (-51.229,6.670,99.754)
O2': (-53.385,5.243,103.643)
C6: (-48.661,8.865,100.396)
C5: (-49.674,7.947,100.306)
C4: (-49.973,7.217,101.446)
P: (-53.883,0.766,99.398)
C4': (-53.340,3.912,101.005)
C2': (-53.110,5.836,102.379)
C2: (-48.440,8.269,102.601)
N1: (-48.058,9.012,101.574)
N3: (-49.380,7.344,102.658)
N6: (-48.286,9.581,99.356)
N7: (-50.469,7.609,99.227)
N9: (-51.024,6.374,101.083)
O5': (-53.022,2.080,99.482)
O3': (-55.359,5.108,101.702)
C4: (-45.023,6.877,102.691)
N3: (-44.849,5.782,101.874)
OP1: (-44.523,12.941,97.782)
OP2: (-46.098,11.880,99.524)
C2: (-44.576,5.790,100.546)
C1': (-44.092,7.113,98.549)
C3': (-45.570,7.655,96.751)
O5': (-45.514,10.647,97.365)
O4': (-43.911,8.450,98.161)
C5': (-44.608,10.047,96.472)
P: (-45.035,11.719,98.453)
C4': (-44.375,8.592,96.804)
C2': (-45.095,6.468,97.592)
O2': (-44.378,5.548,96.778)
N1: (-44.472,7.043,99.962)
O4: (-45.307,6.664,103.879)
O2: (-44.478,4.727,99.989)
C6: (-44.582,8.177,100.716)
C5: (-44.872,8.145,102.023)
O3': (-45.917,7.277,95.426)
N3: (-44.849,5.782,101.874)
OP1: (-44.523,12.941,97.782)
OP2: (-46.098,11.880,99.524)
C2: (-44.576,5.790,100.546)
C1': (-44.092,7.113,98.549)
C3': (-45.570,7.655,96.751)
O5': (-45.514,10.647,97.365)
O4': (-43.911,8.450,98.161)
C5': (-44.608,10.047,96.472)
P: (-45.035,11.719,98.453)
C4': (-44.375,8.592,96.804)
C2': (-45.095,6.468,97.592)
O2': (-44.378,5.548,96.778)
N1: (-44.472,7.043,99.962)
O4: (-45.307,6.664,103.879)
O2: (-44.478,4.727,99.989)
C6: (-44.582,8.177,100.716)
C5: (-44.872,8.145,102.023)
O3': (-45.917,7.277,95.426)
Image (generated by PyMOL):