Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1589:12621
Extra
PDB:
ATOM 1 O3' G A 588 49.274 -6.936 49.984 1.00 35.14 O
ATOM 2 P A A 589 50.238 -6.214 51.059 1.00 35.58 P
ATOM 3 OP1 A A 589 51.498 -5.881 50.329 1.00 35.68 O
ATOM 4 OP2 A A 589 50.310 -7.108 52.255 1.00 35.48 O
ATOM 5 O5' A A 589 49.478 -4.869 51.429 1.00 35.55 O
ATOM 6 C5' A A 589 49.507 -3.783 50.536 1.00 35.65 C
ATOM 7 C4' A A 589 49.646 -2.458 51.236 1.00 35.63 C
ATOM 8 O4' A A 589 48.467 -2.207 52.025 1.00 35.55 O
ATOM 9 C3' A A 589 50.852 -2.260 52.162 1.00 35.59 C
ATOM 10 O3' A A 589 51.408 -0.974 51.911 1.00 35.67 O
ATOM 11 C2' A A 589 50.224 -2.231 53.548 1.00 35.47 C
ATOM 12 O2' A A 589 50.908 -1.408 54.443 1.00 35.46 O
ATOM 13 C1' A A 589 48.832 -1.669 53.261 1.00 35.48 C
ATOM 14 N9 A A 589 47.806 -2.048 54.230 1.00 35.39 N
ATOM 15 C8 A A 589 48.060 -2.902 55.231 1.00 35.30 C
ATOM 16 N7 A A 589 47.050 -3.093 56.005 1.00 35.24 N
ATOM 17 C5 A A 589 46.017 -2.341 55.450 1.00 35.29 C
ATOM 18 C6 A A 589 44.676 -2.163 55.853 1.00 35.27 C
ATOM 19 N6 A A 589 44.309 -2.840 56.927 1.00 35.19 N
ATOM 20 N1 A A 589 43.792 -1.368 55.184 1.00 35.34 N
ATOM 21 C2 A A 589 44.358 -0.768 54.152 1.00 35.43 C
ATOM 22 N3 A A 589 45.634 -0.853 53.680 1.00 35.46 N
ATOM 23 C4 A A 589 46.462 -1.685 54.353 1.00 35.38 C
ATOM 24 P A A 590 52.895 -0.791 51.280 1.00 32.74 P
ATOM 25 OP1 A A 590 52.927 -1.542 49.970 1.00 32.82 O
ATOM 26 OP2 A A 590 53.921 -1.131 52.394 1.00 32.68 O
ATOM 27 O5' A A 590 52.984 0.767 51.025 1.00 32.84 O
TER
ATOM 1 O3' U B2620 39.941 -1.764 55.724 1.00 35.67 O
ATOM 2 P U B2621 40.085 -2.543 57.104 1.00 38.52 P
ATOM 3 OP1 U B2621 41.494 -2.498 57.462 1.00 38.48 O
ATOM 4 OP2 U B2621 39.442 -3.851 56.927 1.00 38.50 O
ATOM 5 O5' U B2621 39.250 -1.636 58.122 1.00 38.52 O
ATOM 6 C5' U B2621 39.709 -0.335 58.476 1.00 38.55 C
ATOM 7 C4' U B2621 38.576 0.581 58.852 1.00 38.62 C
ATOM 8 O4' U B2621 37.598 0.630 57.766 1.00 38.70 O
ATOM 9 C3' U B2621 37.743 0.194 60.081 1.00 38.57 C
ATOM 10 O3' U B2621 38.332 0.591 61.307 1.00 38.54 O
ATOM 11 C2' U B2621 36.421 0.907 59.821 1.00 38.67 C
ATOM 12 O2' U B2621 36.508 2.263 60.229 1.00 38.74 O
ATOM 13 C1' U B2621 36.313 0.853 58.292 1.00 38.73 C
ATOM 14 N1 U B2621 35.463 -0.222 57.849 1.00 38.72 N
ATOM 15 C2 U B2621 34.127 0.064 57.821 1.00 38.80 C
ATOM 16 O2 U B2621 33.735 1.167 58.173 1.00 38.87 O
ATOM 17 N3 U B2621 33.291 -0.954 57.402 1.00 38.81 N
ATOM 18 C4 U B2621 33.658 -2.193 56.966 1.00 38.76 C
ATOM 19 O4 U B2621 32.786 -2.964 56.585 1.00 38.80 O
ATOM 20 C5 U B2621 35.079 -2.432 57.010 1.00 38.68 C
ATOM 21 C6 U B2621 35.923 -1.452 57.449 1.00 38.67 C
ATOM 22 P C B2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 23 OP1 C B2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 24 OP2 C B2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 25 O5' C B2622 37.446 -0.800 63.171 1.00 55.36 O
TER
ATOM 2 P A A 589 50.238 -6.214 51.059 1.00 35.58 P
ATOM 3 OP1 A A 589 51.498 -5.881 50.329 1.00 35.68 O
ATOM 4 OP2 A A 589 50.310 -7.108 52.255 1.00 35.48 O
ATOM 5 O5' A A 589 49.478 -4.869 51.429 1.00 35.55 O
ATOM 6 C5' A A 589 49.507 -3.783 50.536 1.00 35.65 C
ATOM 7 C4' A A 589 49.646 -2.458 51.236 1.00 35.63 C
ATOM 8 O4' A A 589 48.467 -2.207 52.025 1.00 35.55 O
ATOM 9 C3' A A 589 50.852 -2.260 52.162 1.00 35.59 C
ATOM 10 O3' A A 589 51.408 -0.974 51.911 1.00 35.67 O
ATOM 11 C2' A A 589 50.224 -2.231 53.548 1.00 35.47 C
ATOM 12 O2' A A 589 50.908 -1.408 54.443 1.00 35.46 O
ATOM 13 C1' A A 589 48.832 -1.669 53.261 1.00 35.48 C
ATOM 14 N9 A A 589 47.806 -2.048 54.230 1.00 35.39 N
ATOM 15 C8 A A 589 48.060 -2.902 55.231 1.00 35.30 C
ATOM 16 N7 A A 589 47.050 -3.093 56.005 1.00 35.24 N
ATOM 17 C5 A A 589 46.017 -2.341 55.450 1.00 35.29 C
ATOM 18 C6 A A 589 44.676 -2.163 55.853 1.00 35.27 C
ATOM 19 N6 A A 589 44.309 -2.840 56.927 1.00 35.19 N
ATOM 20 N1 A A 589 43.792 -1.368 55.184 1.00 35.34 N
ATOM 21 C2 A A 589 44.358 -0.768 54.152 1.00 35.43 C
ATOM 22 N3 A A 589 45.634 -0.853 53.680 1.00 35.46 N
ATOM 23 C4 A A 589 46.462 -1.685 54.353 1.00 35.38 C
ATOM 24 P A A 590 52.895 -0.791 51.280 1.00 32.74 P
ATOM 25 OP1 A A 590 52.927 -1.542 49.970 1.00 32.82 O
ATOM 26 OP2 A A 590 53.921 -1.131 52.394 1.00 32.68 O
ATOM 27 O5' A A 590 52.984 0.767 51.025 1.00 32.84 O
TER
ATOM 1 O3' U B2620 39.941 -1.764 55.724 1.00 35.67 O
ATOM 2 P U B2621 40.085 -2.543 57.104 1.00 38.52 P
ATOM 3 OP1 U B2621 41.494 -2.498 57.462 1.00 38.48 O
ATOM 4 OP2 U B2621 39.442 -3.851 56.927 1.00 38.50 O
ATOM 5 O5' U B2621 39.250 -1.636 58.122 1.00 38.52 O
ATOM 6 C5' U B2621 39.709 -0.335 58.476 1.00 38.55 C
ATOM 7 C4' U B2621 38.576 0.581 58.852 1.00 38.62 C
ATOM 8 O4' U B2621 37.598 0.630 57.766 1.00 38.70 O
ATOM 9 C3' U B2621 37.743 0.194 60.081 1.00 38.57 C
ATOM 10 O3' U B2621 38.332 0.591 61.307 1.00 38.54 O
ATOM 11 C2' U B2621 36.421 0.907 59.821 1.00 38.67 C
ATOM 12 O2' U B2621 36.508 2.263 60.229 1.00 38.74 O
ATOM 13 C1' U B2621 36.313 0.853 58.292 1.00 38.73 C
ATOM 14 N1 U B2621 35.463 -0.222 57.849 1.00 38.72 N
ATOM 15 C2 U B2621 34.127 0.064 57.821 1.00 38.80 C
ATOM 16 O2 U B2621 33.735 1.167 58.173 1.00 38.87 O
ATOM 17 N3 U B2621 33.291 -0.954 57.402 1.00 38.81 N
ATOM 18 C4 U B2621 33.658 -2.193 56.966 1.00 38.76 C
ATOM 19 O4 U B2621 32.786 -2.964 56.585 1.00 38.80 O
ATOM 20 C5 U B2621 35.079 -2.432 57.010 1.00 38.68 C
ATOM 21 C6 U B2621 35.923 -1.452 57.449 1.00 38.67 C
ATOM 22 P C B2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 23 OP1 C B2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 24 OP2 C B2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 25 O5' C B2622 37.446 -0.800 63.171 1.00 55.36 O
TER
Atoms:
OP1: (51.498,-5.881,50.329)
OP2: (50.310,-7.108,52.255)
C3': (50.852,-2.260,52.162)
C1': (48.832,-1.669,53.261)
C5': (49.507,-3.783,50.536)
O4': (48.467,-2.207,52.025)
C8: (48.060,-2.902,55.231)
O2': (50.908,-1.408,54.443)
C6: (44.676,-2.163,55.853)
C5: (46.017,-2.341,55.450)
C4: (46.462,-1.685,54.353)
P: (50.238,-6.214,51.059)
C4': (49.646,-2.458,51.236)
C2': (50.224,-2.231,53.548)
C2: (44.358,-0.768,54.152)
N1: (43.792,-1.368,55.184)
N3: (45.634,-0.853,53.680)
N6: (44.309,-2.840,56.927)
N7: (47.050,-3.093,56.005)
N9: (47.806,-2.048,54.230)
O5': (49.478,-4.869,51.429)
O3': (51.408,-0.974,51.911)
OP2: (50.310,-7.108,52.255)
C3': (50.852,-2.260,52.162)
C1': (48.832,-1.669,53.261)
C5': (49.507,-3.783,50.536)
O4': (48.467,-2.207,52.025)
C8: (48.060,-2.902,55.231)
O2': (50.908,-1.408,54.443)
C6: (44.676,-2.163,55.853)
C5: (46.017,-2.341,55.450)
C4: (46.462,-1.685,54.353)
P: (50.238,-6.214,51.059)
C4': (49.646,-2.458,51.236)
C2': (50.224,-2.231,53.548)
C2: (44.358,-0.768,54.152)
N1: (43.792,-1.368,55.184)
N3: (45.634,-0.853,53.680)
N6: (44.309,-2.840,56.927)
N7: (47.050,-3.093,56.005)
N9: (47.806,-2.048,54.230)
O5': (49.478,-4.869,51.429)
O3': (51.408,-0.974,51.911)
C4: (33.658,-2.193,56.966)
N3: (33.291,-0.954,57.402)
OP1: (41.494,-2.498,57.462)
OP2: (39.442,-3.851,56.927)
C2: (34.127,0.064,57.821)
C1': (36.313,0.853,58.292)
C3': (37.743,0.194,60.081)
O5': (39.250,-1.636,58.122)
O4': (37.598,0.630,57.766)
C5': (39.709,-0.335,58.476)
P: (40.085,-2.543,57.104)
C4': (38.576,0.581,58.852)
C2': (36.421,0.907,59.821)
O2': (36.508,2.263,60.229)
N1: (35.463,-0.222,57.849)
O4: (32.786,-2.964,56.585)
O2: (33.735,1.167,58.173)
C6: (35.923,-1.452,57.449)
C5: (35.079,-2.432,57.010)
O3': (38.332,0.591,61.307)
N3: (33.291,-0.954,57.402)
OP1: (41.494,-2.498,57.462)
OP2: (39.442,-3.851,56.927)
C2: (34.127,0.064,57.821)
C1': (36.313,0.853,58.292)
C3': (37.743,0.194,60.081)
O5': (39.250,-1.636,58.122)
O4': (37.598,0.630,57.766)
C5': (39.709,-0.335,58.476)
P: (40.085,-2.543,57.104)
C4': (38.576,0.581,58.852)
C2': (36.421,0.907,59.821)
O2': (36.508,2.263,60.229)
N1: (35.463,-0.222,57.849)
O4: (32.786,-2.964,56.585)
O2: (33.735,1.167,58.173)
C6: (35.923,-1.452,57.449)
C5: (35.079,-2.432,57.010)
O3': (38.332,0.591,61.307)
Image (generated by PyMOL):