ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5F:6927:6938

Extra

PDB:
ATOM 1 O3' U A 926 246.888 -9.327 202.317 1.00 61.52 O
ATOM 2 P A A 927 247.591 -10.088 203.522 1.00 65.78 P
ATOM 3 OP1 A A 927 247.626 -11.532 203.152 1.00 66.48 O
ATOM 4 OP2 A A 927 246.904 -9.678 204.788 1.00 64.91 O
ATOM 5 O5' A A 927 249.039 -9.485 203.499 1.00 66.19 O
ATOM 6 C5' A A 927 249.294 -8.181 203.985 1.00 65.65 C
ATOM 7 C4' A A 927 250.702 -7.777 203.658 1.00 66.26 C
ATOM 8 O4' A A 927 250.766 -7.356 202.281 1.00 66.64 O
ATOM 9 C3' A A 927 251.283 -6.645 204.475 1.00 65.85 C
ATOM 10 O3' A A 927 252.674 -6.847 204.560 1.00 66.56 O
ATOM 11 C2' A A 927 251.028 -5.439 203.597 1.00 65.62 C
ATOM 12 O2' A A 927 251.901 -4.353 203.852 1.00 65.58 O
ATOM 13 C1' A A 927 251.244 -6.042 202.205 1.00 66.44 C
ATOM 14 N9 A A 927 250.499 -5.400 201.132 1.00 66.28 N
ATOM 15 C8 A A 927 250.982 -5.040 199.903 1.00 66.88 C
ATOM 16 N7 A A 927 250.079 -4.514 199.120 1.00 66.61 N
ATOM 17 C5 A A 927 248.914 -4.565 199.884 1.00 65.78 C
ATOM 18 C6 A A 927 247.584 -4.170 199.616 1.00 65.18 C
ATOM 19 N6 A A 927 247.215 -3.634 198.456 1.00 65.34 N
ATOM 20 N1 A A 927 246.661 -4.350 200.579 1.00 64.46 N
ATOM 21 C2 A A 927 247.058 -4.897 201.725 1.00 64.36 C
ATOM 22 N3 A A 927 248.265 -5.322 202.102 1.00 64.88 N
ATOM 23 C4 A A 927 249.162 -5.131 201.124 1.00 65.58 C
ATOM 24 P C A 928 253.333 -7.436 205.890 1.00 78.02 P
ATOM 25 OP1 C A 928 254.708 -7.850 205.525 1.00 78.99 O
ATOM 26 OP2 C A 928 252.398 -8.453 206.448 1.00 77.76 O
ATOM 27 O5' C A 928 253.385 -6.155 206.835 1.00 77.29 O
TER

ATOM 1 O3' C B 937 235.423 1.986 197.270 1.00 60.65 O
ATOM 2 P A B 938 235.290 0.389 197.082 1.00 64.39 P
ATOM 3 OP1 A B 938 233.934 0.111 196.560 1.00 64.33 O
ATOM 4 OP2 A B 938 235.722 -0.260 198.365 1.00 64.14 O
ATOM 5 O5' A B 938 236.336 0.112 195.921 1.00 65.26 O
ATOM 6 C5' A B 938 237.693 -0.155 196.171 1.00 65.61 C
ATOM 7 C4' A B 938 238.205 -1.112 195.149 1.00 66.48 C
ATOM 8 O4' A B 938 239.514 -1.567 195.573 1.00 66.83 O
ATOM 9 C3' A B 938 237.356 -2.361 195.023 1.00 66.62 C
ATOM 10 O3' A B 938 237.566 -2.977 193.740 1.00 67.45 O
ATOM 11 C2' A B 938 237.953 -3.222 196.124 1.00 66.54 C
ATOM 12 O2' A B 938 237.657 -4.598 196.032 1.00 66.90 O
ATOM 13 C1' A B 938 239.446 -2.927 195.940 1.00 67.02 C
ATOM 14 N9 A B 938 240.264 -3.128 197.150 1.00 66.82 N
ATOM 15 C8 A B 938 239.863 -3.358 198.447 1.00 66.20 C
ATOM 16 N7 A B 938 240.811 -3.545 199.331 1.00 66.22 N
ATOM 17 C5 A B 938 241.949 -3.438 198.542 1.00 66.90 C
ATOM 18 C6 A B 938 243.324 -3.560 198.861 1.00 67.31 C
ATOM 19 N6 A B 938 243.842 -3.801 200.071 1.00 67.09 N
ATOM 20 N1 A B 938 244.160 -3.407 197.837 1.00 68.01 N
ATOM 21 C2 A B 938 243.668 -3.153 196.614 1.00 68.28 C
ATOM 22 N3 A B 938 242.436 -3.026 196.176 1.00 67.98 N
ATOM 23 C4 A B 938 241.617 -3.187 197.207 1.00 67.28 C
ATOM 24 P U B 939 236.302 -3.342 192.785 1.00 59.90 P
ATOM 25 OP1 U B 939 235.723 -2.067 192.358 1.00 59.59 O
ATOM 26 OP2 U B 939 235.461 -4.309 193.519 1.00 59.58 O
ATOM 27 O5' U B 939 236.965 -4.057 191.525 1.00 60.93 O
TER

Atoms:
OP1: (247.626,-11.532,203.152)
OP2: (246.904,-9.678,204.788)
C3': (251.283,-6.645,204.475)
C1': (251.244,-6.042,202.205)
C5': (249.294,-8.181,203.985)
O4': (250.766,-7.356,202.281)
C8: (250.982,-5.040,199.903)
O2': (251.901,-4.353,203.852)
C6: (247.584,-4.170,199.616)
C5: (248.914,-4.565,199.884)
C4: (249.162,-5.131,201.124)
P: (247.591,-10.088,203.522)
C4': (250.702,-7.777,203.658)
C2': (251.028,-5.439,203.597)
C2: (247.058,-4.897,201.725)
N1: (246.661,-4.350,200.579)
N3: (248.265,-5.322,202.102)
N6: (247.215,-3.634,198.456)
N7: (250.079,-4.514,199.120)
N9: (250.499,-5.400,201.132)
O5': (249.039,-9.485,203.499)
O3': (252.674,-6.847,204.560)
OP1: (233.934,0.111,196.560)
OP2: (235.722,-0.260,198.365)
C3': (237.356,-2.361,195.023)
C1': (239.446,-2.927,195.940)
C5': (237.693,-0.155,196.171)
O4': (239.514,-1.567,195.573)
C8: (239.863,-3.358,198.447)
O2': (237.657,-4.598,196.032)
C6: (243.324,-3.560,198.861)
C5: (241.949,-3.438,198.542)
C4: (241.617,-3.187,197.207)
P: (235.290,0.389,197.082)
C4': (238.205,-1.112,195.149)
C2': (237.953,-3.222,196.124)
C2: (243.668,-3.153,196.614)
N1: (244.160,-3.407,197.837)
N3: (242.436,-3.026,196.176)
N6: (243.842,-3.801,200.071)
N7: (240.811,-3.545,199.331)
N9: (240.264,-3.128,197.150)
O5': (236.336,0.112,195.921)
O3': (237.566,-2.977,193.740)
Image (generated by PyMOL):
PyMOL image
show in jmol