Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:B5:B4
Extra
PDB:
ATOM 1 O3' A A 4 -7.500 -5.035 -18.041 1.00 19.44 O
ATOM 2 P C A 5 -7.890 -3.774 -17.146 1.00 22.33 P
ATOM 3 OP1 C A 5 -8.880 -4.110 -16.104 1.00 24.64 O
ATOM 4 OP2 C A 5 -8.152 -2.731 -18.083 1.00 18.85 O
ATOM 5 O5' C A 5 -6.544 -3.499 -16.318 1.00 24.89 O
ATOM 6 C5' C A 5 -5.323 -3.228 -17.005 1.00 29.36 C
ATOM 7 C4' C A 5 -4.946 -1.760 -16.884 1.00 29.35 C
ATOM 8 O4' C A 5 -4.547 -1.466 -15.517 1.00 30.74 O
ATOM 9 C3' C A 5 -3.716 -1.388 -17.683 1.00 20.39 C
ATOM 10 O3' C A 5 -4.063 -1.110 -19.019 1.00 24.27 O
ATOM 11 C2' C A 5 -3.239 -0.136 -16.962 1.00 34.10 C
ATOM 12 O2' C A 5 -4.009 1.013 -17.254 1.00 32.84 O
ATOM 13 C1' C A 5 -3.472 -0.541 -15.518 1.00 22.79 C
ATOM 14 N1 C A 5 -2.290 -1.194 -14.911 1.00 20.42 N
ATOM 15 C2 C A 5 -1.255 -0.380 -14.489 1.00 24.36 C
ATOM 16 O2 C A 5 -1.358 0.842 -14.676 1.00 26.74 O
ATOM 17 N3 C A 5 -0.186 -0.932 -13.888 1.00 14.74 N
ATOM 18 C4 C A 5 -0.131 -2.244 -13.693 1.00 31.18 C
ATOM 19 N4 C A 5 0.937 -2.731 -13.064 1.00 24.65 N
ATOM 20 C5 C A 5 -1.177 -3.113 -14.138 1.00 20.51 C
ATOM 21 C6 C A 5 -2.217 -2.542 -14.749 1.00 14.86 C
ATOM 22 P G A 6 -3.012 -1.396 -20.176 1.00 30.76 P
ATOM 23 OP1 G A 6 -3.692 -1.129 -21.449 1.00 29.75 O
ATOM 24 OP2 G A 6 -2.404 -2.729 -19.907 1.00 30.73 O
ATOM 25 O5' G A 6 -1.932 -0.241 -19.937 1.00 33.86 O
TER
ATOM 1 O3' G B 3 -4.766 -6.734 -14.493 1.00 39.13 O
ATOM 2 P A B 4 -3.810 -6.871 -15.752 1.00 39.22 P
ATOM 3 OP1 A B 4 -2.802 -7.855 -15.339 1.00 43.51 O
ATOM 4 OP2 A B 4 -3.379 -5.540 -16.255 1.00 35.09 O
ATOM 5 O5' A B 4 -4.789 -7.554 -16.813 1.00 33.78 O
ATOM 6 C5' A B 4 -5.084 -6.954 -18.066 1.00 18.41 C
ATOM 7 C4' A B 4 -6.551 -7.125 -18.359 1.00 28.43 C
ATOM 8 O4' A B 4 -6.974 -8.489 -18.042 1.00 23.03 O
ATOM 9 C3' A B 4 -7.376 -6.288 -17.429 1.00 28.21 C
ATOM 10 O3' A B 4 -7.500 -5.035 -18.041 1.00 19.44 O
ATOM 11 C2' A B 4 -8.710 -7.022 -17.379 1.00 25.63 C
ATOM 12 O2' A B 4 -9.485 -6.628 -18.481 1.00 35.43 O
ATOM 13 C1' A B 4 -8.274 -8.479 -17.527 1.00 27.71 C
ATOM 14 N9 A B 4 -8.244 -9.245 -16.305 1.00 29.47 N
ATOM 15 C8 A B 4 -7.359 -9.121 -15.282 1.00 36.61 C
ATOM 16 N7 A B 4 -7.566 -9.960 -14.303 1.00 39.59 N
ATOM 17 C5 A B 4 -8.667 -10.685 -14.713 1.00 31.75 C
ATOM 18 C6 A B 4 -9.375 -11.751 -14.121 1.00 49.15 C
ATOM 19 N6 A B 4 -9.072 -12.273 -12.926 1.00 39.28 N
ATOM 20 N1 A B 4 -10.418 -12.269 -14.810 1.00 30.79 N
ATOM 21 C2 A B 4 -10.719 -11.736 -16.001 1.00 23.06 C
ATOM 22 N3 A B 4 -10.139 -10.734 -16.651 1.00 34.89 N
ATOM 23 C4 A B 4 -9.099 -10.253 -15.946 1.00 38.47 C
ATOM 24 P C B 5 -7.890 -3.774 -17.146 1.00 22.33 P
ATOM 25 OP1 C B 5 -8.880 -4.110 -16.104 1.00 24.64 O
ATOM 26 OP2 C B 5 -8.152 -2.731 -18.083 1.00 18.85 O
ATOM 27 O5' C B 5 -6.544 -3.499 -16.318 1.00 24.89 O
TER
ATOM 2 P C A 5 -7.890 -3.774 -17.146 1.00 22.33 P
ATOM 3 OP1 C A 5 -8.880 -4.110 -16.104 1.00 24.64 O
ATOM 4 OP2 C A 5 -8.152 -2.731 -18.083 1.00 18.85 O
ATOM 5 O5' C A 5 -6.544 -3.499 -16.318 1.00 24.89 O
ATOM 6 C5' C A 5 -5.323 -3.228 -17.005 1.00 29.36 C
ATOM 7 C4' C A 5 -4.946 -1.760 -16.884 1.00 29.35 C
ATOM 8 O4' C A 5 -4.547 -1.466 -15.517 1.00 30.74 O
ATOM 9 C3' C A 5 -3.716 -1.388 -17.683 1.00 20.39 C
ATOM 10 O3' C A 5 -4.063 -1.110 -19.019 1.00 24.27 O
ATOM 11 C2' C A 5 -3.239 -0.136 -16.962 1.00 34.10 C
ATOM 12 O2' C A 5 -4.009 1.013 -17.254 1.00 32.84 O
ATOM 13 C1' C A 5 -3.472 -0.541 -15.518 1.00 22.79 C
ATOM 14 N1 C A 5 -2.290 -1.194 -14.911 1.00 20.42 N
ATOM 15 C2 C A 5 -1.255 -0.380 -14.489 1.00 24.36 C
ATOM 16 O2 C A 5 -1.358 0.842 -14.676 1.00 26.74 O
ATOM 17 N3 C A 5 -0.186 -0.932 -13.888 1.00 14.74 N
ATOM 18 C4 C A 5 -0.131 -2.244 -13.693 1.00 31.18 C
ATOM 19 N4 C A 5 0.937 -2.731 -13.064 1.00 24.65 N
ATOM 20 C5 C A 5 -1.177 -3.113 -14.138 1.00 20.51 C
ATOM 21 C6 C A 5 -2.217 -2.542 -14.749 1.00 14.86 C
ATOM 22 P G A 6 -3.012 -1.396 -20.176 1.00 30.76 P
ATOM 23 OP1 G A 6 -3.692 -1.129 -21.449 1.00 29.75 O
ATOM 24 OP2 G A 6 -2.404 -2.729 -19.907 1.00 30.73 O
ATOM 25 O5' G A 6 -1.932 -0.241 -19.937 1.00 33.86 O
TER
ATOM 1 O3' G B 3 -4.766 -6.734 -14.493 1.00 39.13 O
ATOM 2 P A B 4 -3.810 -6.871 -15.752 1.00 39.22 P
ATOM 3 OP1 A B 4 -2.802 -7.855 -15.339 1.00 43.51 O
ATOM 4 OP2 A B 4 -3.379 -5.540 -16.255 1.00 35.09 O
ATOM 5 O5' A B 4 -4.789 -7.554 -16.813 1.00 33.78 O
ATOM 6 C5' A B 4 -5.084 -6.954 -18.066 1.00 18.41 C
ATOM 7 C4' A B 4 -6.551 -7.125 -18.359 1.00 28.43 C
ATOM 8 O4' A B 4 -6.974 -8.489 -18.042 1.00 23.03 O
ATOM 9 C3' A B 4 -7.376 -6.288 -17.429 1.00 28.21 C
ATOM 10 O3' A B 4 -7.500 -5.035 -18.041 1.00 19.44 O
ATOM 11 C2' A B 4 -8.710 -7.022 -17.379 1.00 25.63 C
ATOM 12 O2' A B 4 -9.485 -6.628 -18.481 1.00 35.43 O
ATOM 13 C1' A B 4 -8.274 -8.479 -17.527 1.00 27.71 C
ATOM 14 N9 A B 4 -8.244 -9.245 -16.305 1.00 29.47 N
ATOM 15 C8 A B 4 -7.359 -9.121 -15.282 1.00 36.61 C
ATOM 16 N7 A B 4 -7.566 -9.960 -14.303 1.00 39.59 N
ATOM 17 C5 A B 4 -8.667 -10.685 -14.713 1.00 31.75 C
ATOM 18 C6 A B 4 -9.375 -11.751 -14.121 1.00 49.15 C
ATOM 19 N6 A B 4 -9.072 -12.273 -12.926 1.00 39.28 N
ATOM 20 N1 A B 4 -10.418 -12.269 -14.810 1.00 30.79 N
ATOM 21 C2 A B 4 -10.719 -11.736 -16.001 1.00 23.06 C
ATOM 22 N3 A B 4 -10.139 -10.734 -16.651 1.00 34.89 N
ATOM 23 C4 A B 4 -9.099 -10.253 -15.946 1.00 38.47 C
ATOM 24 P C B 5 -7.890 -3.774 -17.146 1.00 22.33 P
ATOM 25 OP1 C B 5 -8.880 -4.110 -16.104 1.00 24.64 O
ATOM 26 OP2 C B 5 -8.152 -2.731 -18.083 1.00 18.85 O
ATOM 27 O5' C B 5 -6.544 -3.499 -16.318 1.00 24.89 O
TER
Atoms:
C2: (-1.255,-0.380,-14.489)
OP1: (-8.880,-4.110,-16.104)
OP2: (-8.152,-2.731,-18.083)
C4: (-0.131,-2.244,-13.693)
O5': (-6.544,-3.499,-16.318)
C3': (-3.716,-1.388,-17.683)
C1': (-3.472,-0.541,-15.518)
O4': (-4.547,-1.466,-15.517)
C5': (-5.323,-3.228,-17.005)
P: (-7.890,-3.774,-17.146)
O2: (-1.358,0.842,-14.676)
C4': (-4.946,-1.760,-16.884)
C2': (-3.239,-0.136,-16.962)
O2': (-4.009,1.013,-17.254)
N1: (-2.290,-1.194,-14.911)
N3: (-0.186,-0.932,-13.888)
N4: (0.937,-2.731,-13.064)
C6: (-2.217,-2.542,-14.749)
C5: (-1.177,-3.113,-14.138)
O3': (-4.063,-1.110,-19.019)
OP1: (-8.880,-4.110,-16.104)
OP2: (-8.152,-2.731,-18.083)
C4: (-0.131,-2.244,-13.693)
O5': (-6.544,-3.499,-16.318)
C3': (-3.716,-1.388,-17.683)
C1': (-3.472,-0.541,-15.518)
O4': (-4.547,-1.466,-15.517)
C5': (-5.323,-3.228,-17.005)
P: (-7.890,-3.774,-17.146)
O2: (-1.358,0.842,-14.676)
C4': (-4.946,-1.760,-16.884)
C2': (-3.239,-0.136,-16.962)
O2': (-4.009,1.013,-17.254)
N1: (-2.290,-1.194,-14.911)
N3: (-0.186,-0.932,-13.888)
N4: (0.937,-2.731,-13.064)
C6: (-2.217,-2.542,-14.749)
C5: (-1.177,-3.113,-14.138)
O3': (-4.063,-1.110,-19.019)
OP1: (-2.802,-7.855,-15.339)
OP2: (-3.379,-5.540,-16.255)
C3': (-7.376,-6.288,-17.429)
C1': (-8.274,-8.479,-17.527)
C5': (-5.084,-6.954,-18.066)
O4': (-6.974,-8.489,-18.042)
C8: (-7.359,-9.121,-15.282)
O2': (-9.485,-6.628,-18.481)
C6: (-9.375,-11.751,-14.121)
C5: (-8.667,-10.685,-14.713)
C4: (-9.099,-10.253,-15.946)
P: (-3.810,-6.871,-15.752)
C4': (-6.551,-7.125,-18.359)
C2': (-8.710,-7.022,-17.379)
C2: (-10.719,-11.736,-16.001)
N1: (-10.418,-12.269,-14.810)
N3: (-10.139,-10.734,-16.651)
N6: (-9.072,-12.273,-12.926)
N7: (-7.566,-9.960,-14.303)
N9: (-8.244,-9.245,-16.305)
O5': (-4.789,-7.554,-16.813)
O3': (-7.500,-5.035,-18.041)
OP2: (-3.379,-5.540,-16.255)
C3': (-7.376,-6.288,-17.429)
C1': (-8.274,-8.479,-17.527)
C5': (-5.084,-6.954,-18.066)
O4': (-6.974,-8.489,-18.042)
C8: (-7.359,-9.121,-15.282)
O2': (-9.485,-6.628,-18.481)
C6: (-9.375,-11.751,-14.121)
C5: (-8.667,-10.685,-14.713)
C4: (-9.099,-10.253,-15.946)
P: (-3.810,-6.871,-15.752)
C4': (-6.551,-7.125,-18.359)
C2': (-8.710,-7.022,-17.379)
C2: (-10.719,-11.736,-16.001)
N1: (-10.418,-12.269,-14.810)
N3: (-10.139,-10.734,-16.651)
N6: (-9.072,-12.273,-12.926)
N7: (-7.566,-9.960,-14.303)
N9: (-8.244,-9.245,-16.305)
O5': (-4.789,-7.554,-16.813)
O3': (-7.500,-5.035,-18.041)
Image (generated by PyMOL):