Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02105:02104
Extra
PDB:
ATOM 1 O3' A A2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 2 P C A2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 3 OP1 C A2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 4 OP2 C A2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 5 O5' C A2105 116.008 107.886 41.592 1.00 65.03 O
ATOM 6 C5' C A2105 116.920 107.521 42.644 1.00 62.93 C
ATOM 7 C4' C A2105 117.353 108.741 43.432 1.00 61.50 C
ATOM 8 O4' C A2105 118.050 109.669 42.559 1.00 60.54 O
ATOM 9 C3' C A2105 116.268 109.615 44.042 1.00 60.99 C
ATOM 10 O3' C A2105 115.724 109.081 45.241 1.00 60.32 O
ATOM 11 C2' C A2105 117.030 110.905 44.320 1.00 60.07 C
ATOM 12 O2' C A2105 117.812 110.851 45.494 1.00 59.71 O
ATOM 13 C1' C A2105 117.946 110.981 43.098 1.00 58.98 C
ATOM 14 N1 C A2105 117.423 111.895 42.068 1.00 57.09 N
ATOM 15 C2 C A2105 117.545 113.275 42.283 1.00 57.06 C
ATOM 16 O2 C A2105 118.068 113.677 43.340 1.00 56.89 O
ATOM 17 N3 C A2105 117.086 114.135 41.345 1.00 56.21 N
ATOM 18 C4 C A2105 116.514 113.666 40.234 1.00 56.64 C
ATOM 19 N4 C A2105 116.075 114.554 39.337 1.00 56.06 N
ATOM 20 C5 C A2105 116.367 112.266 39.993 1.00 56.34 C
ATOM 21 C6 C A2105 116.833 111.425 40.927 1.00 56.47 C
ATOM 22 P A A2106 114.228 109.477 45.678 1.00 59.58 P
ATOM 23 OP1 A A2106 114.027 108.932 47.047 1.00 61.76 O
ATOM 24 OP2 A A2106 113.305 109.072 44.584 1.00 58.86 O
ATOM 25 O5' A A2106 114.247 111.070 45.775 1.00 56.45 O
TER
ATOM 1 O3' G B2103 120.920 111.588 41.055 1.00 74.09 O
ATOM 2 P A B2104 121.759 110.232 40.941 1.00 74.95 P
ATOM 3 OP1 A B2104 121.192 109.275 41.932 1.00 74.52 O
ATOM 4 OP2 A B2104 123.203 110.591 41.008 1.00 76.27 O
ATOM 5 O5' A B2104 121.429 109.713 39.470 1.00 73.01 O
ATOM 6 C5' A B2104 120.540 108.596 39.252 1.00 69.63 C
ATOM 7 C4' A B2104 119.104 109.071 39.203 1.00 67.35 C
ATOM 8 O4' A B2104 119.003 110.231 38.331 1.00 65.87 O
ATOM 9 C3' A B2104 118.098 108.057 38.672 1.00 66.40 C
ATOM 10 O3' A B2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 11 C2' A B2104 118.031 108.437 37.200 1.00 65.13 C
ATOM 12 O2' A B2104 116.847 108.015 36.566 1.00 65.73 O
ATOM 13 C1' A B2104 118.085 109.961 37.294 1.00 64.88 C
ATOM 14 N9 A B2104 118.551 110.616 36.073 1.00 64.84 N
ATOM 15 C8 A B2104 119.822 111.029 35.762 1.00 65.08 C
ATOM 16 N7 A B2104 119.931 111.538 34.561 1.00 65.60 N
ATOM 17 C5 A B2104 118.644 111.466 34.049 1.00 64.42 C
ATOM 18 C6 A B2104 118.100 111.833 32.809 1.00 63.59 C
ATOM 19 N6 A B2104 118.816 112.341 31.810 1.00 64.51 N
ATOM 20 N1 A B2104 116.777 111.646 32.623 1.00 64.16 N
ATOM 21 C2 A B2104 116.060 111.113 33.620 1.00 63.87 C
ATOM 22 N3 A B2104 116.460 110.714 34.824 1.00 63.93 N
ATOM 23 C4 A B2104 117.780 110.919 34.977 1.00 64.69 C
ATOM 24 P C B2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 25 OP1 C B2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 26 OP2 C B2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 27 O5' C B2105 116.008 107.886 41.592 1.00 65.03 O
TER
ATOM 2 P C A2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 3 OP1 C A2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 4 OP2 C A2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 5 O5' C A2105 116.008 107.886 41.592 1.00 65.03 O
ATOM 6 C5' C A2105 116.920 107.521 42.644 1.00 62.93 C
ATOM 7 C4' C A2105 117.353 108.741 43.432 1.00 61.50 C
ATOM 8 O4' C A2105 118.050 109.669 42.559 1.00 60.54 O
ATOM 9 C3' C A2105 116.268 109.615 44.042 1.00 60.99 C
ATOM 10 O3' C A2105 115.724 109.081 45.241 1.00 60.32 O
ATOM 11 C2' C A2105 117.030 110.905 44.320 1.00 60.07 C
ATOM 12 O2' C A2105 117.812 110.851 45.494 1.00 59.71 O
ATOM 13 C1' C A2105 117.946 110.981 43.098 1.00 58.98 C
ATOM 14 N1 C A2105 117.423 111.895 42.068 1.00 57.09 N
ATOM 15 C2 C A2105 117.545 113.275 42.283 1.00 57.06 C
ATOM 16 O2 C A2105 118.068 113.677 43.340 1.00 56.89 O
ATOM 17 N3 C A2105 117.086 114.135 41.345 1.00 56.21 N
ATOM 18 C4 C A2105 116.514 113.666 40.234 1.00 56.64 C
ATOM 19 N4 C A2105 116.075 114.554 39.337 1.00 56.06 N
ATOM 20 C5 C A2105 116.367 112.266 39.993 1.00 56.34 C
ATOM 21 C6 C A2105 116.833 111.425 40.927 1.00 56.47 C
ATOM 22 P A A2106 114.228 109.477 45.678 1.00 59.58 P
ATOM 23 OP1 A A2106 114.027 108.932 47.047 1.00 61.76 O
ATOM 24 OP2 A A2106 113.305 109.072 44.584 1.00 58.86 O
ATOM 25 O5' A A2106 114.247 111.070 45.775 1.00 56.45 O
TER
ATOM 1 O3' G B2103 120.920 111.588 41.055 1.00 74.09 O
ATOM 2 P A B2104 121.759 110.232 40.941 1.00 74.95 P
ATOM 3 OP1 A B2104 121.192 109.275 41.932 1.00 74.52 O
ATOM 4 OP2 A B2104 123.203 110.591 41.008 1.00 76.27 O
ATOM 5 O5' A B2104 121.429 109.713 39.470 1.00 73.01 O
ATOM 6 C5' A B2104 120.540 108.596 39.252 1.00 69.63 C
ATOM 7 C4' A B2104 119.104 109.071 39.203 1.00 67.35 C
ATOM 8 O4' A B2104 119.003 110.231 38.331 1.00 65.87 O
ATOM 9 C3' A B2104 118.098 108.057 38.672 1.00 66.40 C
ATOM 10 O3' A B2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 11 C2' A B2104 118.031 108.437 37.200 1.00 65.13 C
ATOM 12 O2' A B2104 116.847 108.015 36.566 1.00 65.73 O
ATOM 13 C1' A B2104 118.085 109.961 37.294 1.00 64.88 C
ATOM 14 N9 A B2104 118.551 110.616 36.073 1.00 64.84 N
ATOM 15 C8 A B2104 119.822 111.029 35.762 1.00 65.08 C
ATOM 16 N7 A B2104 119.931 111.538 34.561 1.00 65.60 N
ATOM 17 C5 A B2104 118.644 111.466 34.049 1.00 64.42 C
ATOM 18 C6 A B2104 118.100 111.833 32.809 1.00 63.59 C
ATOM 19 N6 A B2104 118.816 112.341 31.810 1.00 64.51 N
ATOM 20 N1 A B2104 116.777 111.646 32.623 1.00 64.16 N
ATOM 21 C2 A B2104 116.060 111.113 33.620 1.00 63.87 C
ATOM 22 N3 A B2104 116.460 110.714 34.824 1.00 63.93 N
ATOM 23 C4 A B2104 117.780 110.919 34.977 1.00 64.69 C
ATOM 24 P C B2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 25 OP1 C B2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 26 OP2 C B2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 27 O5' C B2105 116.008 107.886 41.592 1.00 65.03 O
TER
Atoms:
C2: (117.545,113.275,42.283)
OP1: (116.948,105.982,40.232)
OP2: (114.698,107.066,39.638)
C4: (116.514,113.666,40.234)
O5': (116.008,107.886,41.592)
C3': (116.268,109.615,44.042)
C1': (117.946,110.981,43.098)
O4': (118.050,109.669,42.559)
C5': (116.920,107.521,42.644)
P: (116.086,107.195,40.153)
O2: (118.068,113.677,43.340)
C4': (117.353,108.741,43.432)
C2': (117.030,110.905,44.320)
O2': (117.812,110.851,45.494)
N1: (117.423,111.895,42.068)
N3: (117.086,114.135,41.345)
N4: (116.075,114.554,39.337)
C6: (116.833,111.425,40.927)
C5: (116.367,112.266,39.993)
O3': (115.724,109.081,45.241)
OP1: (116.948,105.982,40.232)
OP2: (114.698,107.066,39.638)
C4: (116.514,113.666,40.234)
O5': (116.008,107.886,41.592)
C3': (116.268,109.615,44.042)
C1': (117.946,110.981,43.098)
O4': (118.050,109.669,42.559)
C5': (116.920,107.521,42.644)
P: (116.086,107.195,40.153)
O2: (118.068,113.677,43.340)
C4': (117.353,108.741,43.432)
C2': (117.030,110.905,44.320)
O2': (117.812,110.851,45.494)
N1: (117.423,111.895,42.068)
N3: (117.086,114.135,41.345)
N4: (116.075,114.554,39.337)
C6: (116.833,111.425,40.927)
C5: (116.367,112.266,39.993)
O3': (115.724,109.081,45.241)
OP1: (121.192,109.275,41.932)
OP2: (123.203,110.591,41.008)
C3': (118.098,108.057,38.672)
C1': (118.085,109.961,37.294)
C5': (120.540,108.596,39.252)
O4': (119.003,110.231,38.331)
C8: (119.822,111.029,35.762)
O2': (116.847,108.015,36.566)
C6: (118.100,111.833,32.809)
C5: (118.644,111.466,34.049)
C4: (117.780,110.919,34.977)
P: (121.759,110.232,40.941)
C4': (119.104,109.071,39.203)
C2': (118.031,108.437,37.200)
C2: (116.060,111.113,33.620)
N1: (116.777,111.646,32.623)
N3: (116.460,110.714,34.824)
N6: (118.816,112.341,31.810)
N7: (119.931,111.538,34.561)
N9: (118.551,110.616,36.073)
O5': (121.429,109.713,39.470)
O3': (116.824,108.319,39.264)
OP2: (123.203,110.591,41.008)
C3': (118.098,108.057,38.672)
C1': (118.085,109.961,37.294)
C5': (120.540,108.596,39.252)
O4': (119.003,110.231,38.331)
C8: (119.822,111.029,35.762)
O2': (116.847,108.015,36.566)
C6: (118.100,111.833,32.809)
C5: (118.644,111.466,34.049)
C4: (117.780,110.919,34.977)
P: (121.759,110.232,40.941)
C4': (119.104,109.071,39.203)
C2': (118.031,108.437,37.200)
C2: (116.060,111.113,33.620)
N1: (116.777,111.646,32.623)
N3: (116.460,110.714,34.824)
N6: (118.816,112.341,31.810)
N7: (119.931,111.538,34.561)
N9: (118.551,110.616,36.073)
O5': (121.429,109.713,39.470)
O3': (116.824,108.319,39.264)
Image (generated by PyMOL):